Wall clock time and date at job start Wed Apr 1 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30199 * 126.20798 * 2 1 4 4 N 1.39801 * 110.12990 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.33477 * 179.97438 * 4 3 2 6 6 C 1.36630 * 109.32198 * 359.97438 * 4 3 2 7 7 N 1.32923 * 133.26908 * 180.02562 * 6 4 3 8 8 C 1.31196 * 121.84313 * 179.97438 * 7 6 4 9 9 C 1.40176 * 121.37569 * 359.97438 * 8 7 6 10 10 C 1.47690 * 120.40872 * 179.97438 * 9 8 7 11 11 O 1.21570 * 120.00011 * 321.26113 * 10 9 8 12 12 N 1.34781 * 119.99680 * 141.26492 * 10 9 8 13 13 C 1.46494 * 120.00054 * 4.89238 * 12 10 9 14 14 C 1.46497 * 119.99826 * 184.89431 * 12 10 9 15 15 H 1.09009 * 110.77658 * 8.75051 * 14 12 10 16 16 C 1.55157 * 110.72193 * 245.51350 * 14 12 10 17 17 C 1.54913 * 101.57790 * 277.13904 * 16 14 12 18 18 N 1.47434 * 104.83059 * 322.98746 * 17 16 14 19 19 C 1.36934 * 125.64680 * 204.17414 * 18 17 16 20 20 H 1.07998 * 119.99936 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00106 * 359.94870 * 19 18 17 22 22 N 1.31612 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47093 * 60.00075 * 23 21 19 25 25 H 1.48490 * 109.47171 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47302 * 300.00479 * 23 21 19 27 27 C 1.47021 * 108.70134 * 24.13234 * 18 17 16 28 28 C 1.39502 * 119.18141 * 0.25745 * 9 8 7 29 29 C 1.39665 * 117.94872 * 359.50626 * 28 9 8 30 30 H 1.08998 * 109.46998 * 90.02392 * 1 2 3 31 31 H 1.09002 * 109.46844 * 210.02140 * 1 2 3 32 32 H 1.08996 * 109.47063 * 330.02136 * 1 2 3 33 33 H 1.09000 * 109.46987 * 270.03670 * 5 4 3 34 34 H 1.08996 * 109.47733 * 30.04012 * 5 4 3 35 35 H 1.08999 * 109.46962 * 150.03828 * 5 4 3 36 36 H 1.08003 * 119.30593 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47064 * 205.50329 * 13 12 10 38 38 H 1.09002 * 109.47098 * 325.49948 * 13 12 10 39 39 H 1.08997 * 109.47403 * 85.49955 * 13 12 10 40 40 H 1.08994 * 111.00266 * 35.20753 * 16 14 12 41 41 H 1.09000 * 111.00619 * 159.06649 * 16 14 12 42 42 H 1.08994 * 110.36890 * 81.82344 * 17 16 14 43 43 H 1.09000 * 110.36506 * 204.15091 * 17 16 14 44 44 H 0.97003 * 119.99801 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.87708 * 239.52009 * 27 18 17 46 46 H 1.09000 * 109.88344 * 118.35557 * 27 18 17 47 47 H 1.08002 * 121.02683 * 179.74513 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0505 0.0000 4 7 3.6195 0.6634 -0.0006 5 6 4.7646 1.5771 -0.0013 6 6 3.6968 -0.7007 -0.0004 7 7 4.7147 -1.5556 -0.0003 8 6 4.5280 -2.8542 0.0004 9 6 3.2395 -3.4063 0.0016 10 6 3.0540 -4.8715 0.0018 11 8 3.7917 -5.5777 -0.6577 12 7 2.0667 -5.4256 0.7331 13 6 1.1118 -4.5703 1.4420 14 6 1.9487 -6.8833 0.8191 15 1 2.8150 -7.3686 0.3694 16 6 0.6372 -7.3685 0.1469 17 6 -0.3933 -7.1513 1.2830 18 7 0.3302 -7.4977 2.5200 19 6 -0.2454 -7.9075 3.6930 20 1 0.3744 -8.1392 4.5465 21 6 -1.6256 -8.0247 3.7851 22 7 -2.3808 -7.7424 2.7449 23 14 -2.4107 -8.5845 5.3850 24 1 -2.0583 -7.6325 6.4689 25 1 -3.8861 -8.6276 5.2238 26 1 -1.9115 -9.9388 5.7341 27 6 1.7719 -7.3312 2.2853 28 6 2.1346 -2.5546 -0.0034 29 6 2.3693 -1.1779 0.0012 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 5.0477 1.8040 -1.0291 34 1 4.4941 2.4992 0.5131 35 1 5.6041 1.1078 0.5116 36 1 5.3849 -3.5115 0.0008 37 1 0.7030 -5.1116 2.2953 38 1 1.6192 -3.6711 1.7914 39 1 0.3026 -4.2918 0.7668 40 1 0.3947 -6.7576 -0.7226 41 1 0.7037 -8.4222 -0.1241 42 1 -0.7141 -6.1100 1.3101 43 1 -1.2511 -7.8101 1.1481 44 1 -3.3452 -7.8246 2.8091 45 1 2.2858 -8.2786 2.4481 46 1 2.1713 -6.5704 2.9560 47 1 1.1287 -2.9478 -0.0067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033315607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:59 Heat of formation + Delta-G solvation = 98.611525 kcal Electronic energy + Delta-G solvation = -30235.891539 eV Core-core repulsion = 26228.236583 eV Total energy + Delta-G solvation = -4007.654955 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.81383 -41.35467 -39.42595 -38.56331 -36.18879 -35.43665 -34.15129 -32.83943 -31.53343 -30.93541 -30.45373 -29.40850 -27.96398 -26.99085 -26.11354 -25.07019 -24.36378 -22.40060 -21.93165 -20.97686 -20.22896 -18.99869 -18.86736 -18.20639 -17.98122 -17.43848 -17.03921 -16.66808 -16.61627 -16.26615 -15.64514 -15.57855 -14.90538 -14.67968 -14.48067 -14.44350 -14.30323 -14.24563 -13.95195 -13.76033 -13.65010 -13.53267 -13.38939 -13.18430 -12.92945 -12.90626 -12.73688 -12.72432 -12.39497 -12.17184 -12.04013 -11.97141 -11.76219 -11.50524 -11.37585 -11.11940 -10.67528 -10.56696 -10.18293 -9.68471 -9.33956 -8.82412 -7.71594 -5.15022 -0.40816 -0.27367 1.04027 1.25355 1.51836 1.53132 1.59234 1.60117 1.90518 2.53773 2.57334 2.95614 3.07289 3.33435 3.38796 3.42170 3.66832 3.74320 3.88193 3.92266 4.05361 4.16628 4.23365 4.29790 4.35097 4.35771 4.37308 4.59766 4.62030 4.69208 4.72842 4.76437 4.79473 4.80388 4.91282 4.94139 4.97998 5.08021 5.14086 5.16722 5.41489 5.49961 5.57527 5.66313 5.71913 5.88532 6.28587 6.35823 6.37662 6.68778 7.03431 7.17238 7.82912 8.46277 9.29051 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002836 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.239948 B = 9870.346818 C =10930.924245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.124 3.876 3 N -0.263 5.263 4 N -0.400 5.400 5 C 0.105 3.895 6 C 0.311 3.689 7 N -0.517 5.517 8 C 0.223 3.777 9 C -0.234 4.234 10 C 0.575 3.425 11 O -0.570 6.570 12 N -0.586 5.586 13 C 0.071 3.929 14 C 0.139 3.861 15 H 0.105 0.895 16 C -0.141 4.141 17 C 0.155 3.845 18 N -0.618 5.618 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.058 4.058 22 N -0.942 5.942 23 Si 0.973 3.027 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.128 3.872 28 C 0.054 3.946 29 C -0.246 4.246 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.069 0.931 44 H 0.247 0.753 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 17.454 -6.882 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 N -0.077 5.077 4 N -0.189 5.189 5 C -0.035 4.035 6 C 0.072 3.928 7 N -0.232 5.232 8 C 0.053 3.947 9 C -0.241 4.241 10 C 0.364 3.636 11 O -0.450 6.450 12 N -0.317 5.317 13 C -0.071 4.071 14 C 0.036 3.964 15 H 0.123 0.877 16 C -0.181 4.181 17 C 0.030 3.970 18 N -0.344 5.344 19 C -0.365 4.365 20 H 0.094 0.906 21 C -0.251 4.251 22 N -0.592 5.592 23 Si 0.802 3.198 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.209 1.209 27 C 0.002 3.998 28 C 0.026 3.974 29 C -0.256 4.256 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.202 0.798 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.097 18.918 -7.110 22.592 hybrid contribution -1.114 -1.561 0.914 2.125 sum 8.983 17.357 -6.197 20.503 Atomic orbital electron populations 1.20553 0.82380 1.05666 1.05284 1.24151 0.98358 0.87138 0.95750 1.76680 0.86536 1.23405 1.21072 1.48388 1.05320 1.01590 1.63612 1.22082 0.83873 0.93184 1.04350 1.19471 0.90978 0.87075 0.95314 1.66802 1.32828 1.03017 1.20551 1.22963 0.96138 0.88880 0.86723 1.20441 0.95860 0.93220 1.14592 1.18085 0.79731 0.87201 0.78609 1.90752 1.47023 1.63768 1.43501 1.47695 1.29218 1.06614 1.48135 1.22316 0.92160 0.94814 0.97848 1.21933 0.99312 0.79555 0.95643 0.87670 1.23234 0.95327 1.01095 0.98426 1.21826 0.94251 0.98052 0.82831 1.44720 1.00800 1.78637 1.10264 1.19309 0.90397 1.37075 0.89703 0.90566 1.25461 0.96521 1.02548 1.00561 1.70011 1.03709 1.55892 1.29554 0.85240 0.76892 0.78156 0.79516 1.20605 1.22087 1.20922 1.21679 0.86201 0.97891 0.94020 1.21749 1.00334 0.89694 0.85640 1.20530 0.93872 0.95072 1.16083 0.87893 0.88135 0.88837 0.89976 0.87800 0.88649 0.79765 0.90910 0.89964 0.90660 0.90320 0.90940 0.96762 0.91269 0.94342 0.94707 0.95223 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.48 71.24 0.75 -0.19 16 2 C 0.12 2.46 7.44 44.81 0.33 2.79 16 3 N -0.26 -5.87 12.39 -43.68 -0.54 -6.41 16 4 N -0.40 -8.90 4.03 -366.45 -1.48 -10.38 16 5 C 0.10 1.48 11.43 127.77 1.46 2.94 16 6 C 0.31 7.78 7.96 134.18 1.07 8.85 16 7 N -0.52 -13.06 10.37 -191.97 -1.99 -15.05 16 8 C 0.22 5.42 10.77 85.26 0.92 6.33 16 9 C -0.23 -5.83 5.25 -20.00 -0.11 -5.94 16 10 C 0.57 17.03 7.36 86.74 0.64 17.67 16 11 O -0.57 -20.07 16.33 -3.93 -0.06 -20.14 16 12 N -0.59 -17.58 2.84 -819.55 -2.33 -19.91 16 13 C 0.07 1.93 6.89 127.77 0.88 2.81 16 14 C 0.14 4.74 3.53 46.18 0.16 4.90 16 15 H 0.11 3.55 7.08 -2.38 -0.02 3.53 16 16 C -0.14 -5.04 6.67 31.99 0.21 -4.83 16 17 C 0.15 6.88 5.05 86.85 0.44 7.32 16 18 N -0.62 -29.22 2.84 -691.98 -1.97 -31.19 16 19 C -0.24 -12.42 10.27 84.03 0.86 -11.56 16 20 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 21 C -0.06 -3.09 5.49 84.86 0.47 -2.62 16 22 N -0.94 -52.45 10.09 21.65 0.22 -52.23 16 23 Si 0.97 43.66 29.55 68.60 2.03 45.69 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 C 0.13 5.02 6.08 86.73 0.53 5.54 16 28 C 0.05 1.16 7.72 22.92 0.18 1.34 16 29 C -0.25 -5.59 6.33 -20.24 -0.13 -5.72 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.19 3.92 8.05 -2.91 -0.02 3.90 16 37 H 0.07 2.53 5.22 -2.38 -0.01 2.52 16 38 H 0.08 1.90 5.81 -2.39 -0.01 1.88 16 39 H 0.08 1.78 6.60 -2.39 -0.02 1.77 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.01 0.65 5.99 -2.39 -0.01 0.63 16 43 H 0.07 3.63 5.87 -2.39 -0.01 3.61 16 44 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.03 1.16 7.56 -2.39 -0.02 1.14 16 47 H 0.17 3.01 5.37 -2.91 -0.02 2.99 16 Total: -1.00 -68.39 375.47 3.55 -64.84 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.01 Total: 15.13 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 8.66 Total: 29.65 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -8.08 Total: -135.17 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.39 3.55 -64.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033315607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.454 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds