Wall clock time and date at job start Wed Apr 1 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38700 * 119.16488 * 2 1 4 4 C 1.39302 * 119.36018 * 180.27884 * 3 2 1 5 5 C 1.47867 * 121.08799 * 179.76419 * 4 3 2 6 6 O 1.21541 * 120.00203 * 226.86020 * 5 4 3 7 7 N 1.34786 * 119.99866 * 46.86177 * 5 4 3 8 8 C 1.46495 * 119.99855 * 355.40872 * 7 5 4 9 9 C 1.46501 * 119.99844 * 175.40866 * 7 5 4 10 10 H 1.09009 * 110.88290 * 3.87788 * 9 7 5 11 11 C 1.55154 * 111.00095 * 240.00087 * 9 7 5 12 12 C 1.54332 * 102.93891 * 206.42169 * 11 9 7 13 13 N 1.47021 * 107.26698 * 22.19504 * 12 11 9 14 14 C 1.36938 * 125.64251 * 181.02094 * 13 12 11 15 15 H 1.08001 * 120.00149 * 185.47798 * 14 13 12 16 16 C 1.38812 * 120.00199 * 5.47515 * 14 13 12 17 17 N 1.31611 * 119.99825 * 6.23313 * 16 14 13 18 18 Si 1.86806 * 119.99889 * 185.95309 * 16 14 13 19 19 H 1.48499 * 109.47037 * 265.28381 * 18 16 14 20 20 H 1.48499 * 109.47080 * 25.28629 * 18 16 14 21 21 H 1.48500 * 109.47043 * 145.28492 * 18 16 14 22 22 C 1.47420 * 108.70815 * 1.28615 * 13 12 11 23 23 C 1.41270 * 117.81897 * 359.49430 * 4 3 2 24 24 C 1.41114 * 133.90638 * 180.27368 * 23 4 3 25 25 N 1.30249 * 108.58488 * 180.02562 * 24 23 4 26 26 N 1.39992 * 109.75064 * 359.97438 * 25 24 23 27 27 C 1.46498 * 125.90748 * 180.02562 * 26 25 24 28 28 C 1.37069 * 108.18429 * 359.97438 * 26 25 24 29 29 N 1.31450 * 119.16531 * 179.77467 * 2 1 3 30 30 H 1.08998 * 109.47466 * 270.22046 * 1 2 3 31 31 H 1.08997 * 109.47125 * 30.22172 * 1 2 3 32 32 H 1.09004 * 109.46885 * 150.22300 * 1 2 3 33 33 H 1.07998 * 120.32053 * 0.04833 * 3 2 1 34 34 H 1.08998 * 109.47279 * 275.12115 * 8 7 5 35 35 H 1.08997 * 109.47647 * 35.12817 * 8 7 5 36 36 H 1.08998 * 109.46979 * 155.12524 * 8 7 5 37 37 H 1.08998 * 110.71946 * 88.06706 * 11 9 7 38 38 H 1.08999 * 110.87361 * 324.85271 * 11 9 7 39 39 H 1.08994 * 109.88206 * 262.77706 * 12 11 9 40 40 H 1.09001 * 110.00875 * 141.67851 * 12 11 9 41 41 H 0.97007 * 120.00280 * 179.72486 * 17 16 14 42 42 H 1.08997 * 110.36606 * 94.48074 * 22 13 12 43 43 H 1.08997 * 110.36629 * 216.80950 * 22 13 12 44 44 H 1.07997 * 125.70829 * 0.02562 * 24 23 4 45 45 H 1.09006 * 109.46618 * 89.97614 * 27 26 25 46 46 H 1.09001 * 109.47136 * 209.97572 * 27 26 25 47 47 H 1.08994 * 109.47042 * 329.97979 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2112 0.0000 4 6 3.5759 1.2159 -0.0059 5 6 4.3351 2.4848 -0.0113 6 8 5.2615 2.6355 -0.7836 7 7 3.9998 3.4744 0.8401 8 6 2.8223 3.3330 1.7002 9 6 4.8128 4.6913 0.9055 10 1 5.6068 4.6687 0.1589 11 6 5.3940 4.8959 2.3295 12 6 5.5882 6.4250 2.4070 13 7 4.6898 7.0300 1.4127 14 6 4.5745 8.3693 1.1519 15 1 3.8212 8.7225 0.4633 16 6 5.4258 9.2732 1.7725 17 7 6.4210 8.8366 2.5150 18 14 5.1636 11.1090 1.5477 19 1 6.0193 11.5989 0.4372 20 1 3.7376 11.3696 1.2258 21 1 5.5257 11.8180 2.8013 22 6 3.9292 5.9565 0.7477 23 6 4.2395 -0.0312 -0.0007 24 6 5.5967 -0.4176 0.0010 25 7 5.6579 -1.7186 0.0059 26 7 4.3641 -2.2531 0.0083 27 6 4.0230 -3.6778 0.0144 28 6 3.4715 -1.2129 0.0053 29 7 2.1476 -1.1478 0.0045 30 1 -0.3634 0.0040 1.0276 31 1 -0.3633 0.8880 -0.5173 32 1 -0.3633 -0.8920 -0.5104 33 1 1.6346 2.1416 0.0008 34 1 1.9326 3.6425 1.1519 35 1 2.7176 2.2917 2.0046 36 1 2.9407 3.9597 2.5841 37 1 6.3486 4.3803 2.4341 38 1 4.6891 4.5577 3.0889 39 1 6.6224 6.6796 2.1756 40 1 5.3325 6.7834 3.4042 41 1 7.0184 9.4682 2.9455 42 1 2.9666 5.8135 1.2386 43 1 3.7869 6.1901 -0.3074 44 1 6.4430 0.2532 -0.0015 45 1 3.9390 -4.0269 1.0436 46 1 3.0726 -3.8261 -0.4983 47 1 4.8036 -4.2405 -0.4975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033540321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:37 Heat of formation + Delta-G solvation = 114.890522 kcal Electronic energy + Delta-G solvation = -29975.175592 eV Core-core repulsion = 25968.226547 eV Total energy + Delta-G solvation = -4006.949045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -42.09734 -40.02051 -38.57266 -37.38996 -34.99743 -34.17488 -32.53753 -32.18149 -31.65677 -29.25753 -27.93383 -27.55237 -27.17855 -26.84206 -24.88377 -23.84835 -22.64782 -21.72732 -20.30665 -20.15900 -18.97906 -17.99286 -17.54857 -17.10287 -17.00909 -16.24669 -16.03901 -15.30915 -14.89635 -14.66749 -14.53665 -14.34603 -14.16498 -14.03618 -13.84937 -13.36546 -13.21274 -12.99460 -12.84445 -12.74386 -12.57617 -12.41213 -12.31217 -12.12331 -11.99196 -11.80650 -11.28189 -10.97347 -10.91195 -10.84203 -10.74547 -10.39159 -10.22666 -10.09755 -9.88160 -9.76513 -9.57105 -9.07980 -8.67769 -8.60666 -8.47286 -6.87242 -5.73174 -3.09996 0.17965 0.87009 1.84280 2.17512 2.61313 2.90587 3.39013 3.42311 3.44460 3.46295 3.72548 4.00018 4.18934 4.44127 4.48448 4.51451 4.77463 4.89622 4.96756 5.07059 5.10591 5.15360 5.17690 5.24190 5.25779 5.30377 5.39072 5.48106 5.56118 5.59245 5.62165 5.66958 5.68103 5.81537 5.93341 6.12293 6.16821 6.23711 6.45091 6.50842 6.51770 6.61828 6.85949 7.13849 7.39588 7.43491 7.57930 7.61194 7.79253 8.07248 8.22924 9.17125 9.77813 10.42294 11.36412 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.002437 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.236748 B =11486.667175 C =12276.310697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.198 3.802 3 C -0.186 4.186 4 C 0.013 3.987 5 C 0.555 3.445 6 O -0.523 6.523 7 N -0.588 5.588 8 C 0.070 3.930 9 C 0.122 3.878 10 H 0.110 0.890 11 C -0.152 4.152 12 C 0.174 3.826 13 N -0.601 5.601 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.132 3.868 23 C -0.193 4.193 24 C 0.097 3.903 25 N -0.240 5.240 26 N -0.394 5.394 27 C 0.115 3.885 28 C 0.316 3.684 29 N -0.496 5.496 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.253 0.747 42 H 0.024 0.976 43 H 0.043 0.957 44 H 0.201 0.799 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.971 -22.897 -2.128 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.048 3.952 3 C -0.208 4.208 4 C -0.001 4.001 5 C 0.341 3.659 6 O -0.399 6.399 7 N -0.320 5.320 8 C -0.073 4.073 9 C 0.019 3.981 10 H 0.128 0.872 11 C -0.191 4.191 12 C 0.049 3.951 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.004 3.996 23 C -0.204 4.204 24 C -0.099 4.099 25 N -0.054 5.054 26 N -0.185 5.185 27 C -0.026 4.026 28 C 0.076 3.924 29 N -0.213 5.213 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.217 0.783 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.999 -24.647 -2.451 26.710 hybrid contribution -0.160 2.306 0.029 2.311 sum -10.158 -22.341 -2.422 24.661 Atomic orbital electron populations 1.20817 0.87567 1.04131 1.03779 1.21140 0.96779 0.86385 0.90873 1.22110 0.92914 1.00118 1.05653 1.19846 0.93515 0.92195 0.94594 1.18121 0.83723 0.82896 0.81168 1.90815 1.29474 1.80918 1.38717 1.47757 1.28326 1.17352 1.38554 1.22020 0.87344 1.02409 0.95490 1.22631 0.94114 0.82195 0.99156 0.87213 1.23235 1.00085 1.00610 0.95169 1.21225 0.96291 0.84784 0.92834 1.44383 1.45343 1.01391 1.41681 1.19042 1.13676 0.80265 1.22823 0.90370 1.24827 0.97156 0.98243 1.00115 1.69944 1.17624 1.32605 1.36477 0.86093 0.77598 0.84900 0.77113 1.21568 1.20621 1.21636 1.21801 0.93652 0.87409 0.96691 1.19231 0.94898 0.93094 1.13199 1.23935 0.96551 0.91999 0.97425 1.76944 0.98624 1.10704 1.19098 1.48320 1.01061 1.05352 1.63741 1.21798 1.02391 0.75182 1.03258 1.18871 0.88790 0.87307 0.97426 1.66247 1.06245 1.30264 1.18497 0.89571 0.89806 0.90086 0.83053 0.91991 0.91321 0.89824 0.91757 0.92124 0.91733 0.94875 0.93680 0.95874 0.93905 0.78282 0.91043 0.89234 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.14 36.01 0.37 -0.23 16 2 C 0.20 1.88 6.78 -82.58 -0.56 1.32 16 3 C -0.19 -1.86 7.45 -39.02 -0.29 -2.15 16 4 C 0.01 0.16 5.01 -104.41 -0.52 -0.36 16 5 C 0.55 8.42 7.23 -12.32 -0.09 8.33 16 6 O -0.52 -9.68 16.28 5.33 0.09 -9.59 16 7 N -0.59 -8.50 2.91 -172.45 -0.50 -9.00 16 8 C 0.07 0.76 7.63 59.84 0.46 1.21 16 9 C 0.12 2.18 3.46 -65.66 -0.23 1.95 16 10 H 0.11 2.20 7.02 -51.92 -0.36 1.84 16 11 C -0.15 -2.76 6.49 -24.89 -0.16 -2.92 16 12 C 0.17 4.10 5.44 -3.06 -0.02 4.08 16 13 N -0.60 -15.00 3.39 -169.94 -0.58 -15.57 16 14 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 15 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 16 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 17 N -0.92 -26.67 10.42 55.49 0.58 -26.09 16 18 Si 0.91 21.84 29.56 -169.99 -5.02 16.81 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.13 2.64 6.79 -2.41 -0.02 2.62 16 23 C -0.19 -2.62 6.00 -106.64 -0.64 -3.26 16 24 C 0.10 1.27 11.77 -17.13 -0.20 1.06 16 25 N -0.24 -3.12 12.44 30.79 0.38 -2.74 16 26 N -0.39 -4.68 4.07 -67.19 -0.27 -4.95 16 27 C 0.11 0.85 11.48 59.85 0.69 1.54 16 28 C 0.32 4.06 8.00 -156.06 -1.25 2.81 16 29 N -0.50 -5.74 10.25 -8.59 -0.09 -5.82 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.15 1.19 6.18 -52.49 -0.32 0.86 16 34 H 0.06 0.55 7.05 -51.93 -0.37 0.19 16 35 H 0.07 0.64 6.20 -51.93 -0.32 0.31 16 36 H 0.08 0.94 6.37 -51.93 -0.33 0.61 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 39 H 0.06 1.72 6.92 -51.93 -0.36 1.36 16 40 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.44 6.96 -51.93 -0.36 0.08 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -34.24 380.41 -8.92 -43.16 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.52 Total: -1.22 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -2.72 Total: 9.28 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.48 Total: -64.17 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.24 -8.92 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033540321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.050 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds