Wall clock time and date at job start Wed Apr 1 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00291 * 2 1 4 4 H 1.48499 * 109.47248 * 240.00128 * 3 2 1 5 5 H 1.48490 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47039 * 120.00197 * 3 2 1 7 7 C 1.38823 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.48973 * 125.81711 * 179.97438 * 9 7 2 11 11 C 1.52211 * 105.55033 * 186.83902 * 10 9 7 12 12 H 1.08997 * 110.79961 * 86.09174 * 11 10 9 13 13 C 1.55828 * 99.35964 * 328.49844 * 11 10 9 14 14 H 1.09003 * 101.08255 * 298.55491 * 13 11 10 15 15 C 1.48500 * 102.65557 * 45.95828 * 13 11 10 16 16 C 1.48404 * 108.58169 * 189.53648 * 13 11 10 17 17 H 1.09004 * 113.90517 * 209.40607 * 16 13 11 18 18 C 1.56629 * 102.97752 * 84.26980 * 16 13 11 19 19 C 1.55205 * 106.58640 * 324.16280 * 18 16 13 20 20 C 1.52439 * 119.78396 * 216.94330 * 11 10 9 21 21 H 1.09002 * 112.79884 * 314.61331 * 20 11 10 22 22 C 1.55907 * 103.24200 * 192.35823 * 20 11 10 23 23 N 1.48731 * 105.13327 * 320.15610 * 22 20 11 24 24 C 1.34775 * 122.68520 * 147.09165 * 23 22 20 25 25 O 1.21569 * 119.99852 * 185.05535 * 24 23 22 26 26 C 1.47738 * 120.00182 * 5.05901 * 24 23 22 27 27 N 1.33006 * 120.16280 * 75.57697 * 26 24 23 28 28 C 1.31724 * 120.01197 * 180.02562 * 27 26 24 29 29 C 1.38799 * 120.34105 * 359.97438 * 28 27 26 30 30 N 1.32033 * 120.32876 * 359.72308 * 29 28 27 31 31 C 1.32834 * 119.97781 * 0.55209 * 30 29 28 32 32 N 1.38269 * 120.16820 * 179.72091 * 31 30 29 33 33 H 0.97001 * 119.99521 * 0.02562 * 1 2 3 34 34 H 1.08993 * 110.22708 * 67.81703 * 10 9 7 35 35 H 1.08998 * 110.22775 * 305.85440 * 10 9 7 36 36 H 1.09001 * 110.85750 * 199.59204 * 15 13 11 37 37 H 1.08995 * 111.03077 * 76.01940 * 15 13 11 38 38 H 1.09007 * 110.12309 * 83.78188 * 18 16 13 39 39 H 1.09005 * 110.12564 * 205.38130 * 18 16 13 40 40 H 1.08993 * 110.92394 * 205.02781 * 19 18 16 41 41 H 1.08999 * 108.65176 * 84.67375 * 19 18 16 42 42 H 1.09003 * 110.30793 * 201.25560 * 22 20 11 43 43 H 1.08999 * 110.43397 * 79.12705 * 22 20 11 44 44 H 1.08002 * 119.83106 * 179.97438 * 28 27 26 45 45 H 1.08007 * 119.83945 * 179.97438 * 29 28 27 46 46 H 0.96996 * 120.00197 * 174.69403 * 32 31 30 47 47 H 0.97006 * 119.99561 * 354.41765 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.9356 -3.7471 -0.0016 11 6 0.7743 -4.7156 -0.1758 12 1 0.5444 -4.8584 -1.2316 13 6 -0.3413 -3.9071 0.5522 14 1 0.0702 -3.8423 1.5595 15 6 -0.1654 -2.5399 -0.0001 16 6 -1.5327 -4.7785 0.7065 17 1 -2.4781 -4.2361 0.7180 18 6 -1.2151 -5.5801 2.0142 19 6 0.3150 -5.8402 2.0138 20 6 0.7848 -6.0506 0.5600 21 1 1.7466 -6.5598 0.4976 22 6 -0.3693 -6.8447 -0.1243 23 7 -1.4521 -5.8480 -0.3392 24 6 -2.2900 -5.8995 -1.3936 25 8 -3.0983 -5.0092 -1.5717 26 6 -2.2263 -7.0382 -2.3328 27 7 -2.7288 -8.2197 -1.9857 28 6 -2.6699 -9.2330 -2.8253 29 6 -2.0854 -9.0756 -4.0743 30 7 -1.5878 -7.9071 -4.4351 31 6 -1.6353 -6.8780 -3.5965 32 7 -1.1101 -5.6541 -3.9680 33 1 -0.4849 0.8401 -0.0004 34 1 2.4429 -3.9332 0.9449 35 1 2.6358 -3.8452 -0.8312 36 1 -0.6309 -1.7969 0.6474 37 1 -0.5626 -2.4731 -1.0129 38 1 -1.4988 -4.9965 2.8900 39 1 -1.7473 -6.5314 2.0095 40 1 0.5600 -6.7219 2.6059 41 1 0.8168 -4.9692 2.4351 42 1 -0.7166 -7.6454 0.5287 43 1 -0.0365 -7.2533 -1.0784 44 1 -3.0785 -10.1913 -2.5403 45 1 -2.0412 -9.9121 -4.7562 46 1 -1.2141 -4.8850 -3.3863 47 1 -0.6342 -5.5656 -4.8087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089789708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:21 Heat of formation + Delta-G solvation = 75.096778 kcal Electronic energy + Delta-G solvation = -31836.004546 eV Core-core repulsion = 27827.329915 eV Total energy + Delta-G solvation = -4008.674631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.96149 -41.99938 -39.70739 -37.59225 -36.57424 -34.94897 -34.40000 -33.41403 -32.81927 -30.80583 -30.70791 -28.56151 -27.46984 -26.50645 -25.57642 -24.62257 -23.57124 -22.33043 -21.68782 -21.55715 -19.47858 -18.99286 -18.76246 -18.63641 -18.41026 -17.69105 -17.04715 -16.75238 -16.52245 -16.18348 -15.88111 -15.75639 -15.34853 -15.06647 -14.86989 -14.70553 -14.31841 -14.23703 -14.03426 -13.69515 -13.23457 -13.18563 -12.98611 -12.89134 -12.73471 -12.63085 -12.60743 -12.45892 -12.19892 -12.07174 -11.94067 -11.76480 -11.71335 -11.48038 -11.37846 -10.85629 -10.82759 -10.56762 -10.10367 -9.69466 -9.15529 -8.93022 -7.79316 -5.22108 -0.26216 0.25935 1.33742 1.43875 1.47266 1.53885 1.70986 2.20864 2.47031 2.70427 3.05594 3.31000 3.35201 3.36890 3.44528 3.52159 3.56983 3.68132 3.99232 4.06472 4.12614 4.19108 4.21489 4.29450 4.30554 4.47129 4.49276 4.57891 4.67084 4.73926 4.84292 4.87897 4.94636 4.99712 5.05137 5.20278 5.22300 5.30765 5.33888 5.36668 5.43829 5.52484 5.66630 5.72771 5.80182 6.19111 6.19462 6.32726 6.47302 6.87259 6.95051 7.03385 7.71427 8.39805 9.24855 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.003615 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.073818 B = 7744.515302 C = 8470.091340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.630 5.630 10 C 0.141 3.859 11 C -0.084 4.084 12 H 0.053 0.947 13 C -0.146 4.146 14 H 0.076 0.924 15 C 0.196 3.804 16 C 0.169 3.831 17 H 0.090 0.910 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.077 4.077 21 H 0.124 0.876 22 C 0.124 3.876 23 N -0.592 5.592 24 C 0.581 3.419 25 O -0.579 6.579 26 C -0.051 4.051 27 N -0.390 5.390 28 C -0.011 4.011 29 C 0.134 3.866 30 N -0.515 5.515 31 C 0.382 3.618 32 N -0.827 5.827 33 H 0.245 0.755 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.062 0.938 37 H -0.031 1.031 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.214 0.786 45 H 0.221 0.779 46 H 0.409 0.591 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -25.018 -1.574 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.357 5.357 10 C 0.017 3.983 11 C -0.103 4.103 12 H 0.072 0.928 13 C -0.166 4.166 14 H 0.094 0.906 15 C 0.072 3.928 16 C 0.066 3.934 17 H 0.108 0.892 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.096 4.096 21 H 0.142 0.858 22 C 0.003 3.997 23 N -0.324 5.324 24 C 0.368 3.632 25 O -0.458 6.458 26 C -0.199 4.199 27 N -0.106 5.106 28 C -0.177 4.177 29 C -0.030 4.030 30 N -0.239 5.239 31 C 0.141 3.859 32 N -0.368 5.368 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.080 0.920 37 H -0.013 1.013 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.231 0.769 45 H 0.238 0.762 46 H 0.239 0.761 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.499 -24.244 -1.627 24.344 hybrid contribution 0.299 2.194 -0.658 2.310 sum -1.200 -22.049 -2.285 22.200 Atomic orbital electron populations 1.70131 1.06317 1.24990 1.58488 1.25632 0.96532 1.00956 1.02912 0.85141 0.77073 0.78823 0.78223 1.20574 1.22223 1.19984 1.19434 0.90952 0.83789 1.42619 0.89982 1.45904 1.01684 1.00827 1.87324 1.21189 0.94466 0.84429 0.98170 1.21919 0.95077 0.94906 0.98429 0.92827 1.21540 0.96709 0.95563 1.02813 0.90589 1.20075 0.83971 0.93199 0.95560 1.21489 0.97311 0.87387 0.87168 0.89167 1.23143 0.97085 1.00443 0.94883 1.22297 0.94391 1.02854 0.95525 1.22192 0.99040 0.93526 0.94828 0.85812 1.22766 0.85621 0.90319 1.00962 1.49664 1.31708 1.28254 1.22762 1.17912 0.80411 0.84426 0.80501 1.90812 1.40051 1.40696 1.74252 1.20819 1.09660 0.94951 0.94428 1.68162 1.10097 0.97796 1.34589 1.24202 1.02229 0.99185 0.92096 1.24609 0.88100 0.94122 0.96171 1.68227 1.22627 1.00466 1.32550 1.19075 0.89569 0.88277 0.88947 1.42233 1.60448 1.07439 1.26689 0.94561 0.94463 0.95667 0.92012 1.01300 0.89717 0.89182 0.87688 0.92414 0.88126 0.91091 0.76931 0.76218 0.76105 0.75158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.86 10.17 21.66 0.22 -58.64 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.75 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.24 -13.65 10.31 84.04 0.87 -12.79 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -33.06 3.49 -696.34 -2.43 -35.49 16 10 C 0.14 5.71 6.84 85.64 0.59 6.29 16 11 C -0.08 -2.78 2.45 -10.26 -0.03 -2.81 16 12 H 0.05 1.94 7.48 -2.39 -0.02 1.92 16 13 C -0.15 -5.60 2.53 -12.69 -0.03 -5.64 16 14 H 0.08 2.90 4.42 -2.39 -0.01 2.88 16 15 C 0.20 10.20 5.67 84.30 0.48 10.68 16 16 C 0.17 5.47 4.30 44.17 0.19 5.66 16 17 H 0.09 3.36 7.73 -2.38 -0.02 3.34 16 18 C -0.12 -2.67 5.50 32.62 0.18 -2.49 16 19 C -0.11 -2.30 5.44 31.77 0.17 -2.13 16 20 C -0.08 -1.69 3.97 -9.56 -0.04 -1.73 16 21 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 22 C 0.12 2.68 5.27 86.95 0.46 3.13 16 23 N -0.59 -17.45 2.16 -782.86 -1.69 -19.14 16 24 C 0.58 19.97 6.21 86.76 0.54 20.51 16 25 O -0.58 -25.13 16.93 -3.93 -0.07 -25.20 16 26 C -0.05 -1.46 5.01 42.01 0.21 -1.25 16 27 N -0.39 -9.32 10.43 -183.94 -1.92 -11.24 16 28 C -0.01 -0.17 11.21 84.84 0.95 0.78 16 29 C 0.13 1.82 11.22 84.80 0.95 2.78 16 30 N -0.52 -11.20 10.52 -191.86 -2.02 -13.22 16 31 C 0.38 10.17 7.77 133.50 1.04 11.20 16 32 N -0.83 -21.92 8.97 -54.83 -0.49 -22.41 16 33 H 0.24 14.87 8.31 -92.71 -0.77 14.09 16 34 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 3.67 6.12 -2.39 -0.01 3.65 16 37 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.09 1.73 7.34 -2.38 -0.02 1.72 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.43 6.58 -2.39 -0.02 1.42 16 42 H 0.10 1.70 7.34 -2.39 -0.02 1.69 16 43 H 0.07 1.52 7.26 -2.39 -0.02 1.50 16 44 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 45 H 0.22 0.73 8.06 -2.91 -0.02 0.70 16 46 H 0.41 12.76 7.60 -92.71 -0.70 12.06 16 47 H 0.42 9.15 8.95 -92.70 -0.83 8.32 16 Total: -1.00 -80.78 364.64 0.12 -80.65 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.50 Total: 27.19 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 6.99 Total: 28.74 kcal Atomic # 7 Polarization: -151.81 SS G_CDS: -8.33 Total: -160.14 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -80.78 0.12 -80.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089789708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.749 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds