Wall clock time and date at job start Wed Apr 1 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00267 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47069 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46819 * 179.97438 * 10 9 8 12 12 C 1.38675 * 120.41915 * 264.99768 * 11 10 9 13 13 C 1.38627 * 118.42106 * 180.02562 * 12 11 10 14 14 C 1.38225 * 119.16003 * 359.97438 * 13 12 11 15 15 N 1.31845 * 120.76835 * 359.97438 * 14 13 12 16 16 C 1.31891 * 121.72418 * 359.70816 * 15 14 13 17 17 C 1.50698 * 119.62170 * 180.31121 * 16 15 14 18 18 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97468 * 359.94647 * 19 2 1 21 21 C 1.50702 * 109.47635 * 89.99791 * 20 19 2 22 22 H 1.07999 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99972 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00160 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47113 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46540 * 119.99926 * 25 23 21 28 28 H 1.48495 * 109.46996 * 239.99739 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 34 34 H 0.97005 * 120.00218 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46575 * 299.99872 * 9 8 6 36 36 H 1.09000 * 109.47212 * 59.99752 * 9 8 6 37 37 H 1.09004 * 109.47028 * 299.99240 * 10 9 8 38 38 H 1.09000 * 109.47595 * 59.99632 * 10 9 8 39 39 H 1.08000 * 120.78669 * 0.02562 * 12 11 10 40 40 H 1.08004 * 120.41605 * 180.02562 * 13 12 11 41 41 H 1.08008 * 119.61610 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47137 * 270.27076 * 17 16 15 43 43 H 1.09003 * 109.46913 * 30.26623 * 17 16 15 44 44 H 1.08995 * 109.47702 * 150.26476 * 17 16 15 45 45 H 1.09001 * 109.47030 * 210.00125 * 20 19 2 46 46 H 1.09005 * 109.47259 * 329.99077 * 20 19 2 47 47 H 0.96997 * 120.00168 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 8 3.5277 3.3139 0.0152 8 7 5.7298 3.6047 0.0151 9 6 5.5812 5.0622 0.0226 10 6 6.9645 5.7159 0.0240 11 6 6.8116 7.2151 0.0310 12 6 6.8427 7.9296 -1.1570 13 6 6.6985 9.3073 -1.1024 14 6 6.5291 9.9185 0.1258 15 7 6.5035 9.2070 1.2355 16 6 6.6313 7.8944 1.2208 17 6 6.5880 7.1273 2.5172 18 7 3.6337 -0.6575 -0.0044 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0124 21 6 1.6941 -2.9555 -1.4354 22 1 1.9094 -2.2838 -2.2532 23 6 1.2765 -4.2440 -1.6933 24 7 1.0148 -5.0622 -0.6974 25 14 1.0824 -4.8275 -3.4572 26 1 1.4372 -3.7241 -4.3855 27 1 1.9819 -5.9845 -3.6975 28 1 -0.3254 -5.2382 -3.6906 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6587 1.0778 0.0037 34 1 6.6148 3.2075 0.0131 35 1 5.0323 5.3759 -0.8654 36 1 5.0339 5.3670 0.9146 37 1 7.5137 5.4022 0.9118 38 1 7.5114 5.4109 -0.8682 39 1 6.9761 7.4247 -2.1024 40 1 6.7174 9.8954 -2.0081 41 1 6.4165 10.9915 0.1769 42 1 7.5958 7.0447 2.9243 43 1 5.9506 7.6521 3.2288 44 1 6.1864 6.1303 2.3363 45 1 2.5851 -3.1070 0.4978 46 1 0.8919 -2.5584 0.5019 47 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:07 Heat of formation + Delta-G solvation = 76.792909 kcal Electronic energy + Delta-G solvation = -28111.704297 eV Core-core repulsion = 24103.103216 eV Total energy + Delta-G solvation = -4008.601081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.89697 -40.68283 -39.59491 -36.26340 -34.73842 -33.76215 -33.39268 -33.24942 -31.40103 -30.81010 -29.48532 -27.89955 -26.60038 -26.29797 -24.55099 -23.04660 -22.73463 -21.78761 -21.53057 -19.87610 -19.57792 -17.78867 -17.26248 -16.80289 -16.67866 -16.50257 -15.76674 -15.70307 -15.23125 -14.95621 -14.61864 -14.56437 -14.30775 -14.14283 -13.90155 -13.54568 -13.44481 -12.94876 -12.89425 -12.59807 -12.47278 -12.37272 -12.33025 -12.25157 -12.02614 -11.68665 -11.59505 -11.39262 -11.06446 -10.85542 -10.41552 -10.25881 -10.15013 -10.02075 -9.82884 -9.66060 -9.51880 -9.26597 -9.20058 -8.64531 -7.89841 -7.39128 -6.25037 -4.32597 0.65607 0.86777 2.36059 2.65652 3.10232 3.20209 3.28157 3.33211 3.34682 3.59228 3.84509 3.92355 4.18531 4.29867 4.32236 4.38889 4.47438 4.55126 4.60975 4.84349 5.01833 5.08475 5.13640 5.15837 5.23634 5.31255 5.41867 5.49734 5.57155 5.72076 5.74069 5.77603 5.87173 5.96277 6.12425 6.18552 6.24471 6.30985 6.51066 6.58868 6.65597 6.96959 7.06001 7.13555 7.53751 7.60394 7.68189 7.89758 7.94491 8.08842 8.58400 8.68943 8.77362 9.33810 10.82085 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.025144 B = 0.001683 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.330852 B =16628.976965 C =16862.619629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.643 5.643 6 C 0.712 3.288 7 O -0.565 6.565 8 N -0.746 5.746 9 C 0.144 3.856 10 C -0.089 4.089 11 C -0.133 4.133 12 C -0.066 4.066 13 C -0.179 4.179 14 C 0.101 3.899 15 N -0.485 5.485 16 C 0.136 3.864 17 C -0.113 4.113 18 N -0.324 5.324 19 N -0.318 5.318 20 C 0.258 3.742 21 C -0.535 4.535 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.397 0.603 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.952 25.400 2.189 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.293 5.293 6 C 0.412 3.588 7 O -0.440 6.440 8 N -0.403 5.403 9 C 0.020 3.980 10 C -0.127 4.127 11 C -0.135 4.135 12 C -0.092 4.092 13 C -0.198 4.198 14 C -0.056 4.056 15 N -0.194 5.194 16 C -0.002 4.002 17 C -0.170 4.170 18 N -0.155 5.155 19 N -0.101 5.101 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.241 0.759 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.430 24.943 3.040 28.034 hybrid contribution 0.564 -0.504 -1.917 2.061 sum 12.994 24.439 1.123 27.701 Atomic orbital electron populations 1.20374 0.87973 1.03824 1.02503 1.21058 0.94891 0.87143 1.00940 1.21238 0.89722 0.99819 1.21230 1.18656 0.86545 0.89251 1.02738 1.41376 1.07608 1.03695 1.76651 1.15607 0.84705 0.80412 0.78118 1.90887 1.23525 1.73478 1.56086 1.44991 1.07673 1.06341 1.81308 1.21161 0.96042 0.77649 1.03118 1.20737 0.97368 0.90346 1.04280 1.20444 1.03008 0.96188 0.93887 1.21547 0.95354 0.94130 0.98123 1.22139 1.02540 0.95452 0.99712 1.22765 0.94856 1.00262 0.87758 1.67551 1.12982 1.07292 1.31623 1.21213 0.94019 0.89871 0.95058 1.20856 1.03353 0.99510 0.93264 1.77238 0.99996 1.08317 1.29907 1.48957 1.00870 1.07720 1.52511 1.19680 0.95968 0.71407 0.98887 1.21377 1.46609 0.97934 0.91438 0.91691 1.24931 0.94726 0.96065 0.98099 1.69928 1.45045 1.06931 1.31051 0.86311 0.77864 0.78771 0.83804 1.19589 1.20686 1.20642 0.91111 0.89944 0.90646 0.82266 0.75941 0.76907 0.91219 0.91047 0.89534 0.89839 0.84635 0.84697 0.82735 0.90225 0.90213 0.90105 0.93027 0.92800 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.94 6.93 -82.28 -0.57 1.37 16 3 C -0.29 -6.04 9.52 -39.83 -0.38 -6.42 16 4 C 0.28 5.76 8.11 -154.36 -1.25 4.50 16 5 N -0.64 -9.85 5.46 -15.51 -0.08 -9.94 16 6 C 0.71 10.28 8.53 -86.92 -0.74 9.53 16 7 O -0.56 -10.29 13.47 5.28 0.07 -10.22 16 8 N -0.75 -6.79 5.56 -65.22 -0.36 -7.16 16 9 C 0.14 1.18 5.46 -4.04 -0.02 1.16 16 10 C -0.09 -0.48 4.77 -27.88 -0.13 -0.61 16 11 C -0.13 -0.94 5.15 -104.48 -0.54 -1.48 16 12 C -0.07 -0.42 9.84 -39.28 -0.39 -0.81 16 13 C -0.18 -1.10 10.11 -39.44 -0.40 -1.50 16 14 C 0.10 0.74 11.18 -17.55 -0.20 0.55 16 15 N -0.49 -4.63 10.27 -9.47 -0.10 -4.73 16 16 C 0.14 1.14 6.78 -82.59 -0.56 0.58 16 17 C -0.11 -0.74 9.39 36.00 0.34 -0.41 16 18 N -0.32 -7.49 12.59 31.44 0.40 -7.09 16 19 N -0.32 -7.59 3.59 -58.32 -0.21 -7.80 16 20 C 0.26 6.64 5.81 -5.20 -0.03 6.61 16 21 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 22 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 25 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 33 H 0.41 4.85 8.84 -40.82 -0.36 4.49 16 34 H 0.40 2.31 8.49 -40.82 -0.35 1.96 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.67 6.87 -51.93 -0.36 0.31 16 37 H 0.09 0.37 7.03 -51.93 -0.36 0.00 16 38 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.48 5.39 -51.93 -0.28 0.20 16 45 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -35.11 396.51 -10.12 -45.23 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.59 Total: 5.43 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.93 Total: -1.49 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.38 Total: -61.00 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.11 -10.12 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.020 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds