Wall clock time and date at job start Wed Apr 1 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39965 * 120.32056 * 2 1 4 4 N 1.31504 * 120.10839 * 179.97438 * 3 2 1 5 5 C 1.33390 * 120.85056 * 0.02562 * 4 3 2 6 6 C 1.40797 * 132.47978 * 179.97438 * 5 4 3 7 7 C 1.46583 * 126.53733 * 0.02562 * 6 5 4 8 8 O 1.21722 * 120.00297 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00209 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47434 * 325.00474 * 10 9 7 12 12 C 1.53004 * 109.46913 * 85.00181 * 10 9 7 13 13 C 1.53003 * 109.47091 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47363 * 300.00422 * 13 12 10 15 15 H 1.09003 * 109.46589 * 299.99757 * 14 13 12 16 16 N 1.46499 * 109.47115 * 180.02562 * 14 13 12 17 17 C 1.36932 * 120.00456 * 84.99573 * 16 14 13 18 18 H 1.08005 * 119.99894 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00272 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99955 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47424 * 89.99566 * 21 19 17 23 23 H 1.48503 * 109.47115 * 209.99912 * 21 19 17 24 24 H 1.48499 * 109.47043 * 329.99430 * 21 19 17 25 25 C 1.52994 * 109.47328 * 59.99616 * 14 13 12 26 26 C 1.52995 * 109.47338 * 205.00085 * 10 9 7 27 27 C 1.40636 * 106.92401 * 180.02562 * 6 5 4 28 28 N 1.30698 * 108.72562 * 0.02562 * 27 6 5 29 29 N 1.36590 * 120.79538 * 0.02562 * 5 4 3 30 30 C 1.35751 * 120.32266 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47612 * 89.99602 * 1 2 3 32 32 H 1.09001 * 109.47336 * 209.99551 * 1 2 3 33 33 H 1.09003 * 109.47238 * 329.99196 * 1 2 3 34 34 H 1.08002 * 119.94912 * 359.97438 * 3 2 1 35 35 H 0.96996 * 120.00191 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47345 * 299.99882 * 12 10 9 37 37 H 1.09001 * 109.46884 * 60.00457 * 12 10 9 38 38 H 1.08998 * 109.47306 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.46714 * 60.00561 * 13 12 10 40 40 H 0.97003 * 119.99741 * 264.99988 * 16 14 13 41 41 H 0.96998 * 120.00012 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.47231 * 179.97438 * 25 14 13 43 43 H 1.09006 * 109.47222 * 59.99964 * 25 14 13 44 44 H 1.09001 * 109.47585 * 300.00233 * 26 10 9 45 45 H 1.09004 * 109.47042 * 60.00516 * 26 10 9 46 46 H 1.07998 * 125.63676 * 180.02562 * 27 6 5 47 47 H 1.07998 * 120.42426 * 0.03890 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2135 1.2082 0.0000 4 7 3.5286 1.2033 0.0005 5 6 4.2084 0.0556 0.0005 6 6 5.5864 -0.2333 0.0005 7 6 6.6821 0.7403 0.0010 8 8 6.4370 1.9326 0.0020 9 7 7.9612 0.3154 0.0015 10 6 9.0564 1.2884 0.0026 11 1 8.7692 2.1594 -0.5865 12 6 9.3533 1.7203 1.4400 13 6 10.4976 2.7361 1.4413 14 6 11.7473 2.0973 0.8321 15 1 12.0340 1.2263 1.4214 16 7 12.8430 3.0698 0.8339 17 6 13.6234 3.2200 1.9490 18 1 13.4309 2.6218 2.8274 19 6 14.6613 4.1418 1.9508 20 7 14.8956 4.8710 0.8805 21 14 15.7263 4.3461 3.4718 22 1 16.8823 3.4173 3.3952 23 1 16.2193 5.7449 3.5466 24 1 14.9238 4.0388 4.6829 25 6 11.4503 1.6654 -0.6052 26 6 10.3062 0.6502 -0.6067 27 6 5.7110 -1.6341 -0.0001 28 7 4.5152 -2.1617 -0.0010 29 7 3.5552 -1.1440 -0.0005 30 6 2.1923 -1.1718 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5140 34 1 1.6779 2.1461 -0.0004 35 1 8.1566 -0.6347 0.0011 36 1 8.4629 2.1750 1.8741 37 1 9.6406 0.8493 2.0291 38 1 10.7089 3.0441 2.4653 39 1 10.2107 3.6071 0.8521 40 1 13.0156 3.6073 0.0451 41 1 15.6211 5.5149 0.8817 42 1 12.3407 1.2108 -1.0394 43 1 11.1634 2.5365 -1.1945 44 1 10.5935 -0.2208 -0.0176 45 1 10.0947 0.3426 -1.6308 46 1 6.6410 -2.1831 0.0002 47 1 1.6646 -2.1140 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034752016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:56 Heat of formation + Delta-G solvation = 80.615501 kcal Electronic energy + Delta-G solvation = -28812.929634 eV Core-core repulsion = 24804.494312 eV Total energy + Delta-G solvation = -4008.435321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.90491 -39.74068 -38.72806 -37.65187 -34.87709 -34.62987 -33.32185 -32.74021 -30.75426 -30.30366 -29.95122 -27.86192 -26.91402 -25.34683 -24.03918 -23.15214 -22.52000 -22.19706 -21.02322 -20.27428 -19.48809 -18.87022 -17.72163 -17.27618 -16.84884 -16.68502 -16.01591 -15.77691 -15.04566 -14.64657 -14.57061 -14.21596 -14.12493 -13.98596 -13.73839 -13.61528 -13.48469 -13.41806 -13.01878 -12.90942 -12.84065 -12.44277 -11.98333 -11.89673 -11.70796 -11.51672 -11.33119 -10.93459 -10.74919 -10.66253 -10.58012 -10.25266 -10.12150 -9.99610 -9.94306 -9.74776 -9.65701 -9.49759 -8.85081 -8.76462 -8.34996 -6.86915 -5.69367 -2.97334 -0.08293 0.27198 1.43974 1.76775 2.72723 3.19379 3.35139 3.48115 3.51244 3.53256 3.55014 3.64112 3.78393 4.08365 4.24540 4.60337 4.65258 4.66228 4.77058 4.87698 4.98139 5.08106 5.16194 5.23934 5.27144 5.40297 5.46906 5.59859 5.70323 5.73853 5.78940 5.84202 5.89785 5.98495 5.99287 6.14714 6.35048 6.38671 6.43689 6.60570 6.68109 6.79539 6.82065 6.84495 7.08902 7.15524 7.25031 7.67204 7.77140 8.44423 8.49730 9.60497 10.20057 10.54593 11.53509 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028097 B = 0.001825 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.303397 B =15339.449832 C =15703.207557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.187 4.187 3 C 0.187 3.813 4 N -0.435 5.435 5 C 0.313 3.687 6 C -0.283 4.283 7 C 0.593 3.407 8 O -0.527 6.527 9 N -0.725 5.725 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.123 4.123 13 C -0.132 4.132 14 C 0.177 3.823 15 H 0.046 0.954 16 N -0.726 5.726 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.120 4.120 26 C -0.118 4.118 27 C 0.127 3.873 28 N -0.312 5.312 29 N -0.304 5.304 30 C 0.158 3.842 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.185 0.815 35 H 0.393 0.607 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.206 0.794 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.557 -16.462 -4.480 35.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.193 4.193 3 C 0.004 3.996 4 N -0.144 5.144 5 C 0.081 3.919 6 C -0.300 4.300 7 C 0.379 3.621 8 O -0.403 6.403 9 N -0.376 5.376 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.163 4.163 13 C -0.173 4.173 14 C 0.067 3.933 15 H 0.064 0.936 16 N -0.366 5.366 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.054 4.054 28 N -0.133 5.133 29 N -0.072 5.072 30 C 0.022 3.978 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.222 0.778 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -31.492 -16.062 -4.317 35.615 hybrid contribution 0.712 -0.205 0.651 0.986 sum -30.780 -16.267 -3.667 35.007 Atomic orbital electron populations 1.20637 0.87302 1.04195 1.03492 1.20641 0.99275 0.92313 1.07075 1.23664 0.88985 0.98673 0.88263 1.68379 1.08447 1.23890 1.13714 1.20427 0.93219 0.81154 0.97061 1.19525 0.90336 0.93605 1.26516 1.16745 0.81580 0.87261 0.76469 1.90863 1.83854 1.16140 1.49434 1.45876 1.05264 1.10009 1.76423 1.21058 0.84968 0.91800 0.97571 0.89432 1.21899 0.99192 0.99694 0.95497 1.22216 0.95133 0.97810 1.02117 1.20243 0.87859 0.92325 0.92848 0.93640 1.42433 1.33545 1.44624 1.15986 1.19252 1.07855 1.16727 0.92789 0.91243 1.24731 0.99582 0.99365 0.97465 1.69661 1.33200 1.27477 1.27907 0.86213 0.80620 0.76933 0.82592 1.21833 1.21855 1.20834 1.21737 0.96891 0.98273 0.99011 1.21740 0.94439 0.99165 1.00355 1.24157 0.96627 0.92373 0.92250 1.77595 0.96344 1.08282 1.31121 1.47016 1.06118 1.07945 1.46143 1.21963 0.79312 1.01310 0.95215 0.90129 0.90668 0.89973 0.79854 0.77379 0.92330 0.92414 0.91915 0.92498 0.78325 0.93614 0.91437 0.91978 0.91614 0.91896 0.77796 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.07 10.03 36.00 0.36 0.29 16 2 C -0.19 -0.85 5.86 -104.87 -0.61 -1.46 16 3 C 0.19 1.30 10.97 -17.05 -0.19 1.11 16 4 N -0.43 -5.31 10.26 -12.00 -0.12 -5.44 16 5 C 0.31 3.95 7.74 -155.83 -1.21 2.75 16 6 C -0.28 -3.58 6.17 -104.66 -0.65 -4.23 16 7 C 0.59 8.76 7.75 -12.90 -0.10 8.66 16 8 O -0.53 -10.06 16.40 5.17 0.08 -9.97 16 9 N -0.73 -8.75 5.07 -55.14 -0.28 -9.03 16 10 C 0.15 2.12 2.45 -67.93 -0.17 1.96 16 11 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 12 C -0.12 -1.96 5.50 -26.73 -0.15 -2.10 16 13 C -0.13 -2.51 5.50 -26.73 -0.15 -2.66 16 14 C 0.18 3.55 2.77 -67.93 -0.19 3.37 16 15 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 16 N -0.73 -18.52 5.12 -53.43 -0.27 -18.79 16 17 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 21 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.12 -1.98 5.39 -26.76 -0.14 -2.13 16 26 C -0.12 -1.52 5.39 -26.76 -0.14 -1.67 16 27 C 0.13 1.18 11.44 -17.13 -0.20 0.99 16 28 N -0.31 -3.19 12.58 30.76 0.39 -2.81 16 29 N -0.30 -3.05 3.86 -11.97 -0.05 -3.10 16 30 C 0.16 0.94 10.94 -16.45 -0.18 0.76 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.07 -0.02 8.08 -51.93 -0.42 -0.44 16 33 H 0.08 -0.01 8.10 -51.93 -0.42 -0.43 16 34 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.39 3.33 7.52 -40.82 -0.31 3.02 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.21 1.01 7.46 -52.49 -0.39 0.62 16 47 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -38.60 390.70 -9.48 -48.08 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.87 Total: 7.06 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.95 Total: -1.71 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.39 Total: -67.16 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.60 -9.48 -48.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034752016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.700 kcal (2) G-P(sol) polarization free energy of solvation -38.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds