Wall clock time and date at job start Wed Apr 1 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39966 * 120.31571 * 2 1 4 4 N 1.31506 * 120.10152 * 180.02562 * 3 2 1 5 5 C 1.33379 * 120.85520 * 359.97438 * 4 3 2 6 6 C 1.40805 * 132.47808 * 180.02562 * 5 4 3 7 7 C 1.46586 * 126.53734 * 359.96586 * 6 5 4 8 8 O 1.21715 * 119.99612 * 49.44418 * 7 6 5 9 9 N 1.34772 * 120.00123 * 229.44098 * 7 6 5 10 10 C 1.46926 * 120.62865 * 175.73554 * 9 7 6 11 11 C 1.53199 * 108.77358 * 233.62728 * 10 9 7 12 12 C 1.53038 * 109.31057 * 305.36364 * 11 10 9 13 13 H 1.08995 * 109.46426 * 301.34405 * 12 11 10 14 14 N 1.46503 * 109.46053 * 181.38314 * 12 11 10 15 15 C 1.36936 * 119.99892 * 84.99811 * 14 12 11 16 16 H 1.08003 * 119.99802 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99688 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00235 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47020 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47278 * 120.00280 * 19 17 15 22 22 H 1.48493 * 109.47481 * 240.00512 * 19 17 15 23 23 C 1.53041 * 109.53748 * 61.36492 * 12 11 10 24 24 H 1.08999 * 109.49857 * 58.58618 * 23 12 11 25 25 C 1.53007 * 109.49745 * 178.68223 * 23 12 11 26 26 C 1.46920 * 120.63206 * 355.74958 * 9 7 6 27 27 C 1.40638 * 106.92228 * 179.71098 * 6 5 4 28 28 N 1.30698 * 108.72741 * 0.25787 * 27 6 5 29 29 N 1.36593 * 120.80193 * 0.17505 * 5 4 3 30 30 C 1.35761 * 120.32454 * 180.41072 * 2 1 3 31 31 H 1.09001 * 109.47239 * 90.00620 * 1 2 3 32 32 H 1.09002 * 109.46792 * 209.99721 * 1 2 3 33 33 H 1.08995 * 109.47670 * 330.00106 * 1 2 3 34 34 H 1.07991 * 119.95137 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.58990 * 113.84458 * 10 9 7 36 36 H 1.09004 * 109.58866 * 353.41225 * 10 9 7 37 37 H 1.09005 * 109.49641 * 65.31616 * 11 10 9 38 38 H 1.09000 * 109.49787 * 185.41024 * 11 10 9 39 39 H 0.96996 * 120.00342 * 265.00210 * 14 12 11 40 40 H 0.97007 * 119.99695 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46945 * 60.00260 * 25 23 12 42 42 H 1.09004 * 109.46907 * 180.02562 * 25 23 12 43 43 H 1.09005 * 109.47123 * 299.99696 * 25 23 12 44 44 H 1.09003 * 109.58442 * 6.58724 * 26 9 7 45 45 H 1.08998 * 109.70739 * 246.23344 * 26 9 7 46 46 H 1.08003 * 125.63796 * 180.29505 * 27 6 5 47 47 H 1.07997 * 120.42222 * 359.48683 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2083 0.0000 4 7 3.5285 1.2034 -0.0005 5 6 4.2083 0.0558 -0.0005 6 6 5.5864 -0.2330 -0.0005 7 6 6.6822 0.7407 -0.0012 8 8 6.6818 1.6577 0.7991 9 7 7.6899 0.6205 -0.8880 10 6 8.7461 1.6391 -0.9634 11 6 8.8565 2.1286 -2.4109 12 6 9.0733 0.9287 -3.3357 13 1 9.9789 0.4000 -3.0386 14 7 9.2124 1.3961 -4.7172 15 6 10.4333 1.8076 -5.1811 16 1 11.2937 1.7872 -4.5287 17 6 10.5653 2.2500 -6.4902 18 7 9.5168 2.2744 -7.2854 19 14 12.2308 2.8107 -7.1232 20 1 13.2395 2.6861 -6.0404 21 1 12.6337 1.9634 -8.2743 22 1 12.1436 4.2278 -7.5583 23 6 7.8746 -0.0175 -3.2359 24 1 6.9651 0.5174 -3.5093 25 6 8.0771 -1.2002 -4.1854 26 6 7.7530 -0.5313 -1.7979 27 6 5.7111 -1.6339 0.0063 28 7 4.5154 -2.1616 0.0045 29 7 3.5554 -1.1440 -0.0036 30 6 2.1924 -1.1718 -0.0084 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6779 2.1460 0.0004 35 1 9.6957 1.2046 -0.6512 36 1 8.4934 2.4764 -0.3128 37 1 7.9377 2.6433 -2.6920 38 1 9.6997 2.8136 -2.4999 39 1 8.4397 1.4142 -5.3033 40 1 9.6089 2.5839 -8.2002 41 1 8.9860 -1.7353 -3.9103 42 1 7.2229 -1.8736 -4.1142 43 1 8.1664 -0.8339 -5.2081 44 1 6.8451 -1.1261 -1.6979 45 1 8.6204 -1.1449 -1.5545 46 1 6.6412 -2.1829 0.0125 47 1 1.6647 -2.1141 -0.0068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036201014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:25 Heat of formation + Delta-G solvation = 98.561744 kcal Electronic energy + Delta-G solvation = -30118.584354 eV Core-core repulsion = 26110.927240 eV Total energy + Delta-G solvation = -4007.657114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.78059 -39.90000 -38.55510 -37.44604 -34.70623 -34.46614 -33.08359 -32.55859 -31.66180 -30.12792 -29.17436 -27.41210 -26.26825 -25.34017 -24.93503 -23.67458 -22.64438 -21.91684 -21.48119 -20.02079 -19.26258 -18.46667 -17.53032 -17.20821 -16.91510 -16.52242 -15.80571 -15.53288 -14.91386 -14.81747 -14.42095 -14.10249 -14.02421 -14.00979 -13.68178 -13.57187 -13.38074 -13.16799 -12.91009 -12.74439 -12.67950 -12.42381 -12.21003 -11.81093 -11.76756 -11.44543 -11.33440 -11.13835 -10.90498 -10.75167 -10.52909 -10.35259 -10.16954 -10.14406 -9.83149 -9.74989 -9.67797 -9.49886 -8.87320 -8.39336 -8.13730 -6.92743 -5.75118 -3.03211 0.07891 0.42402 1.60177 1.99567 2.79232 3.03282 3.42748 3.44225 3.47556 3.50219 3.52068 3.74184 3.92258 4.21772 4.39631 4.59991 4.73786 4.79324 4.92767 4.99770 5.06221 5.09047 5.23347 5.25484 5.37012 5.43894 5.52685 5.60019 5.63843 5.69473 5.76142 5.83286 5.86873 5.97054 6.05743 6.09057 6.22925 6.37475 6.42978 6.49441 6.60406 6.74143 6.86632 6.98478 6.99824 7.12791 7.26688 7.65967 7.72347 8.43246 8.43841 9.54778 10.12702 10.47571 11.47607 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002582 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.654168 B =10840.281423 C =11124.962230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.190 4.190 3 C 0.188 3.812 4 N -0.446 5.446 5 C 0.304 3.696 6 C -0.273 4.273 7 C 0.601 3.399 8 O -0.538 6.538 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.150 4.150 12 C 0.185 3.815 13 H 0.048 0.952 14 N -0.721 5.721 15 C -0.234 4.234 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.904 3.096 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.110 4.110 24 H 0.068 0.932 25 C -0.136 4.136 26 C 0.111 3.889 27 C 0.125 3.875 28 N -0.309 5.309 29 N -0.304 5.304 30 C 0.160 3.840 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.183 0.817 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.206 0.794 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.549 -9.763 16.275 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.005 3.995 4 N -0.155 5.155 5 C 0.074 3.926 6 C -0.289 4.289 7 C 0.389 3.611 8 O -0.415 6.415 9 N -0.333 5.333 10 C -0.007 4.007 11 C -0.192 4.192 12 C 0.074 3.926 13 H 0.066 0.934 14 N -0.361 5.361 15 C -0.365 4.365 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.130 4.130 24 H 0.086 0.914 25 C -0.194 4.194 26 C -0.012 4.012 27 C -0.055 4.055 28 N -0.132 5.132 29 N -0.072 5.072 30 C 0.024 3.976 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.200 0.800 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.223 0.777 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.206 -9.710 16.662 26.521 hybrid contribution 0.608 0.330 -0.786 1.047 sum -17.598 -9.380 15.877 25.490 Atomic orbital electron populations 1.20619 0.87375 1.04041 1.03476 1.20591 0.99194 0.92297 1.07496 1.23562 0.88843 0.98644 0.88459 1.68246 1.08799 1.24183 1.14313 1.20267 0.92898 0.81329 0.98131 1.19358 0.90262 0.93982 1.25318 1.16784 0.80341 0.83580 0.80425 1.90784 1.77531 1.34251 1.38953 1.47962 1.25151 1.24544 1.35652 1.21696 0.89027 0.91196 0.98735 1.22674 1.02475 1.00923 0.93088 1.20197 0.94505 0.91361 0.86505 0.93356 1.42418 1.09389 1.77165 1.07159 1.19272 0.87470 1.34917 0.94886 0.91153 1.24723 0.97165 1.02478 0.96671 1.69673 1.28156 1.53583 1.06755 0.86150 0.83637 0.78017 0.78598 1.20575 1.21987 1.21976 1.21735 1.00365 0.97641 0.93272 0.91390 1.21668 1.00092 0.96552 1.01058 1.21990 1.02035 0.87744 0.89476 1.24133 0.96613 0.91990 0.92786 1.77584 0.96200 1.08232 1.31153 1.46934 1.06044 1.07786 1.46469 1.21940 0.79337 1.01246 0.95041 0.90148 0.90745 0.90088 0.79971 0.91774 0.89628 0.92311 0.90625 0.78302 0.93648 0.92914 0.94080 0.90739 0.90212 0.91128 0.77715 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 10.03 36.01 0.36 0.15 16 2 C -0.19 -1.15 5.86 -104.86 -0.61 -1.76 16 3 C 0.19 1.58 10.97 -17.04 -0.19 1.40 16 4 N -0.45 -6.10 10.47 -12.00 -0.13 -6.23 16 5 C 0.30 4.37 7.90 -155.84 -1.23 3.14 16 6 C -0.27 -4.04 5.17 -104.66 -0.54 -4.59 16 7 C 0.60 10.24 7.55 -12.90 -0.10 10.15 16 8 O -0.54 -10.95 16.54 5.18 0.09 -10.86 16 9 N -0.60 -9.35 2.97 -174.34 -0.52 -9.87 16 10 C 0.12 1.86 6.42 -3.71 -0.02 1.84 16 11 C -0.15 -2.79 5.66 -26.61 -0.15 -2.94 16 12 C 0.18 3.58 2.19 -67.89 -0.15 3.43 16 13 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 14 N -0.72 -17.59 4.41 -53.39 -0.24 -17.83 16 15 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 C -0.11 -1.80 2.46 -90.50 -0.22 -2.03 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 C -0.14 -2.14 9.03 37.16 0.34 -1.80 16 26 C 0.11 1.50 5.16 -3.71 -0.02 1.48 16 27 C 0.13 1.47 9.58 -17.13 -0.16 1.31 16 28 N -0.31 -3.75 12.58 30.76 0.39 -3.36 16 29 N -0.30 -3.57 3.86 -11.97 -0.05 -3.62 16 30 C 0.16 1.21 10.94 -16.44 -0.18 1.03 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.08 8.09 -51.93 -0.42 -0.34 16 33 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.45 7.03 -51.93 -0.36 1.08 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.38 10.08 7.51 -40.82 -0.31 9.78 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.41 7.36 -51.93 -0.38 1.02 16 44 H 0.08 0.98 4.54 -51.93 -0.24 0.74 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.21 1.69 7.59 -52.48 -0.40 1.29 16 47 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -36.69 384.78 -8.80 -45.50 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.72 Total: 6.63 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -3.13 Total: 3.79 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: 0.19 Total: -68.17 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.69 -8.80 -45.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036201014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.057 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds