Wall clock time and date at job start Wed Apr 1 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39966 * 120.31571 * 2 1 4 4 N 1.31506 * 120.10152 * 180.02562 * 3 2 1 5 5 C 1.33379 * 120.85520 * 359.97438 * 4 3 2 6 6 C 1.40805 * 132.47808 * 180.02562 * 5 4 3 7 7 C 1.46586 * 126.53734 * 359.96586 * 6 5 4 8 8 O 1.21715 * 119.99612 * 49.44418 * 7 6 5 9 9 N 1.34772 * 120.00123 * 229.44098 * 7 6 5 10 10 C 1.46926 * 120.62865 * 175.73554 * 9 7 6 11 11 C 1.53199 * 108.77358 * 233.62728 * 10 9 7 12 12 C 1.53038 * 109.31057 * 305.36364 * 11 10 9 13 13 H 1.08995 * 109.46426 * 301.34405 * 12 11 10 14 14 N 1.46503 * 109.46053 * 181.38314 * 12 11 10 15 15 C 1.36936 * 119.99892 * 84.99811 * 14 12 11 16 16 H 1.08003 * 119.99802 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99688 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00235 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47020 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47278 * 120.00280 * 19 17 15 22 22 H 1.48493 * 109.47481 * 240.00512 * 19 17 15 23 23 C 1.53041 * 109.53748 * 61.36492 * 12 11 10 24 24 H 1.08999 * 109.49857 * 58.58618 * 23 12 11 25 25 C 1.53007 * 109.49745 * 178.68223 * 23 12 11 26 26 C 1.46920 * 120.63206 * 355.74958 * 9 7 6 27 27 C 1.40638 * 106.92228 * 179.71098 * 6 5 4 28 28 N 1.30698 * 108.72741 * 0.25787 * 27 6 5 29 29 N 1.36593 * 120.80193 * 0.17505 * 5 4 3 30 30 C 1.35761 * 120.32454 * 180.41072 * 2 1 3 31 31 H 1.09001 * 109.47239 * 90.00620 * 1 2 3 32 32 H 1.09002 * 109.46792 * 209.99721 * 1 2 3 33 33 H 1.08995 * 109.47670 * 330.00106 * 1 2 3 34 34 H 1.07991 * 119.95137 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.58990 * 113.84458 * 10 9 7 36 36 H 1.09004 * 109.58866 * 353.41225 * 10 9 7 37 37 H 1.09005 * 109.49641 * 65.31616 * 11 10 9 38 38 H 1.09000 * 109.49787 * 185.41024 * 11 10 9 39 39 H 0.96996 * 120.00342 * 265.00210 * 14 12 11 40 40 H 0.97007 * 119.99695 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46945 * 60.00260 * 25 23 12 42 42 H 1.09004 * 109.46907 * 180.02562 * 25 23 12 43 43 H 1.09005 * 109.47123 * 299.99696 * 25 23 12 44 44 H 1.09003 * 109.58442 * 6.58724 * 26 9 7 45 45 H 1.08998 * 109.70739 * 246.23344 * 26 9 7 46 46 H 1.08003 * 125.63796 * 180.29505 * 27 6 5 47 47 H 1.07997 * 120.42222 * 359.48683 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2083 0.0000 4 7 3.5285 1.2034 -0.0005 5 6 4.2083 0.0558 -0.0005 6 6 5.5864 -0.2330 -0.0005 7 6 6.6822 0.7407 -0.0012 8 8 6.6818 1.6577 0.7991 9 7 7.6899 0.6205 -0.8880 10 6 8.7461 1.6391 -0.9634 11 6 8.8565 2.1286 -2.4109 12 6 9.0733 0.9287 -3.3357 13 1 9.9789 0.4000 -3.0386 14 7 9.2124 1.3961 -4.7172 15 6 10.4333 1.8076 -5.1811 16 1 11.2937 1.7872 -4.5287 17 6 10.5653 2.2500 -6.4902 18 7 9.5168 2.2744 -7.2854 19 14 12.2308 2.8107 -7.1232 20 1 13.2395 2.6861 -6.0404 21 1 12.6337 1.9634 -8.2743 22 1 12.1436 4.2278 -7.5583 23 6 7.8746 -0.0175 -3.2359 24 1 6.9651 0.5174 -3.5093 25 6 8.0771 -1.2002 -4.1854 26 6 7.7530 -0.5313 -1.7979 27 6 5.7111 -1.6339 0.0063 28 7 4.5154 -2.1616 0.0045 29 7 3.5554 -1.1440 -0.0036 30 6 2.1924 -1.1718 -0.0084 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6779 2.1460 0.0004 35 1 9.6957 1.2046 -0.6512 36 1 8.4934 2.4764 -0.3128 37 1 7.9377 2.6433 -2.6920 38 1 9.6997 2.8136 -2.4999 39 1 8.4397 1.4142 -5.3033 40 1 9.6089 2.5839 -8.2002 41 1 8.9860 -1.7353 -3.9103 42 1 7.2229 -1.8736 -4.1142 43 1 8.1664 -0.8339 -5.2081 44 1 6.8451 -1.1261 -1.6979 45 1 8.6204 -1.1449 -1.5545 46 1 6.6412 -2.1829 0.0125 47 1 1.6647 -2.1141 -0.0068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036201014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:24 Heat of formation + Delta-G solvation = 73.827522 kcal Electronic energy + Delta-G solvation = -30119.656910 eV Core-core repulsion = 26110.927240 eV Total energy + Delta-G solvation = -4008.729670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.58929 -41.14053 -39.38802 -38.85873 -36.13672 -35.44116 -34.21211 -33.83032 -33.09643 -31.50782 -30.49172 -28.04447 -27.49802 -26.71959 -25.91576 -24.98634 -23.82308 -22.93591 -22.79504 -21.32909 -20.47932 -19.46354 -19.01565 -18.30973 -18.11258 -17.39688 -16.99743 -16.69573 -16.36459 -16.01805 -15.67525 -15.50816 -15.12769 -15.01618 -14.79537 -14.61692 -14.41445 -14.28113 -13.93524 -13.75505 -13.64759 -13.42185 -13.12034 -13.08522 -12.96179 -12.88127 -12.76819 -12.67397 -12.47658 -12.10780 -12.07749 -11.97709 -11.82675 -11.64839 -11.25886 -10.94863 -10.90076 -10.83150 -10.47995 -9.67480 -9.03756 -8.96584 -7.91223 -5.18658 -0.62820 -0.29540 0.86320 1.07443 1.47987 1.48695 1.58252 1.71545 2.08175 2.37085 2.58059 2.76360 2.94066 3.40200 3.41993 3.67853 3.74168 3.79968 3.82605 3.85493 4.04625 4.11075 4.15785 4.28010 4.37452 4.39213 4.40759 4.50492 4.68574 4.73336 4.82128 4.84439 4.85397 4.91272 4.99398 5.00208 5.05311 5.09557 5.15799 5.26229 5.31945 5.41016 5.47575 5.53224 5.57120 5.64075 6.16670 6.30523 6.41659 6.52053 7.18474 7.36826 8.12680 8.36201 9.32649 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002582 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.654168 B =10840.281423 C =11124.962230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.171 4.171 3 C 0.192 3.808 4 N -0.506 5.506 5 C 0.290 3.710 6 C -0.318 4.318 7 C 0.602 3.398 8 O -0.584 6.584 9 N -0.600 5.600 10 C 0.124 3.876 11 C -0.139 4.139 12 C 0.181 3.819 13 H 0.056 0.944 14 N -0.731 5.731 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.299 1.299 23 C -0.101 4.101 24 H 0.044 0.956 25 C -0.127 4.127 26 C 0.118 3.882 27 C 0.137 3.863 28 N -0.320 5.320 29 N -0.307 5.307 30 C 0.147 3.853 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.215 0.785 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.237 0.763 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.967 -11.925 17.603 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.177 4.177 3 C 0.012 3.988 4 N -0.217 5.217 5 C 0.058 3.942 6 C -0.335 4.335 7 C 0.392 3.608 8 O -0.465 6.465 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.180 4.180 12 C 0.073 3.927 13 H 0.074 0.926 14 N -0.370 5.370 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.798 3.202 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.227 1.227 23 C -0.121 4.121 24 H 0.062 0.938 25 C -0.185 4.185 26 C -0.004 4.004 27 C -0.043 4.043 28 N -0.142 5.142 29 N -0.074 5.074 30 C 0.013 3.987 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.201 0.799 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.253 0.747 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -19.653 -11.910 18.027 29.207 hybrid contribution 0.783 1.045 -1.132 1.728 sum -18.870 -10.866 16.895 27.560 Atomic orbital electron populations 1.20775 0.83910 1.05796 1.04681 1.21062 1.01160 0.90829 1.04626 1.24340 0.87693 1.01194 0.85575 1.68267 1.11233 1.24707 1.17543 1.20415 0.93323 0.82429 0.98064 1.19251 0.90006 0.94827 1.29391 1.17141 0.80604 0.83342 0.79729 1.90738 1.78446 1.36388 1.40900 1.48003 1.24707 1.24768 1.35636 1.21547 0.90463 0.91517 0.96332 1.22480 1.00561 1.00162 0.94813 1.20423 0.96247 0.92049 0.84008 0.92610 1.42604 1.08137 1.77253 1.08974 1.19647 0.88502 1.33024 0.94837 0.90440 1.25495 1.00397 1.03862 0.97273 1.69831 1.30167 1.55527 1.06762 0.85139 0.80180 0.76798 0.78085 1.18898 1.22220 1.22667 1.21615 0.97661 0.97132 0.95732 0.93759 1.21566 1.02020 0.96491 0.98436 1.22091 1.04451 0.87209 0.86687 1.24531 0.97654 0.90731 0.91433 1.77510 0.96369 1.08509 1.31836 1.47140 1.07283 1.06853 1.46142 1.22841 0.77989 1.03503 0.94385 0.88953 0.88840 0.88572 0.76827 0.89258 0.90815 0.94897 0.91879 0.79860 0.94298 0.91582 0.91294 0.94480 0.88292 0.87998 0.74711 0.76459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.00 10.03 71.24 0.71 0.71 16 2 C -0.17 -1.58 5.86 -20.02 -0.12 -1.70 16 3 C 0.19 2.95 10.97 85.16 0.93 3.89 16 4 N -0.51 -14.00 10.47 -191.88 -2.01 -16.01 16 5 C 0.29 8.35 7.90 133.98 1.06 9.41 16 6 C -0.32 -9.43 5.17 -19.89 -0.10 -9.53 16 7 C 0.60 20.91 7.55 86.42 0.65 21.56 16 8 O -0.58 -24.80 16.54 -4.40 -0.07 -24.87 16 9 N -0.60 -18.47 2.97 -823.71 -2.45 -20.92 16 10 C 0.12 4.00 6.42 86.36 0.55 4.56 16 11 C -0.14 -5.29 5.66 30.67 0.17 -5.12 16 12 C 0.18 7.05 2.19 45.02 0.10 7.14 16 13 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 14 N -0.73 -36.52 4.41 -322.81 -1.42 -37.94 16 15 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 18 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 19 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 C -0.10 -3.28 2.46 -10.71 -0.03 -3.31 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 C -0.13 -3.86 9.03 71.98 0.65 -3.21 16 26 C 0.12 2.98 5.16 86.36 0.45 3.43 16 27 C 0.14 3.01 9.58 85.45 0.82 3.83 16 28 N -0.32 -7.21 12.58 -56.58 -0.71 -7.92 16 29 N -0.31 -6.79 3.86 -191.79 -0.74 -7.53 16 30 C 0.15 1.83 10.94 83.42 0.91 2.75 16 31 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.09 -0.26 8.09 -2.39 -0.02 -0.28 16 33 H 0.10 -0.21 8.10 -2.39 -0.02 -0.23 16 34 H 0.22 1.54 8.06 -2.92 -0.02 1.52 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.58 7.03 -2.38 -0.02 2.56 16 37 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.37 20.29 7.51 -92.71 -0.70 19.59 16 40 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.04 1.40 7.36 -2.38 -0.02 1.38 16 44 H 0.10 2.20 4.54 -2.39 -0.01 2.19 16 45 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.24 3.21 7.59 -2.91 -0.02 3.19 16 47 H 0.22 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -85.04 384.78 3.28 -81.76 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.30 Total: 25.87 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 8.07 Total: 18.70 kcal Atomic # 7 Polarization: -142.95 SS G_CDS: -7.05 Total: -150.00 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.07 Total: -24.87 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -85.04 3.28 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036201014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.586 kcal (2) G-P(sol) polarization free energy of solvation -85.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds