Wall clock time and date at job start Wed Apr 1 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35340 * 125.69399 * 2 1 4 4 N 1.36161 * 107.14412 * 179.97438 * 3 2 1 5 5 C 1.36222 * 133.92584 * 180.02562 * 4 3 2 6 6 C 1.35473 * 120.52205 * 179.97438 * 5 4 3 7 7 N 1.32688 * 122.11642 * 0.06546 * 6 5 4 8 8 C 1.32297 * 121.18868 * 359.96506 * 7 6 5 9 9 C 1.47801 * 120.59437 * 179.97438 * 8 7 6 10 10 O 1.21558 * 120.00044 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99656 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99731 * 180.02562 * 11 9 8 13 13 H 1.09008 * 110.02189 * 33.61282 * 12 11 9 14 14 C 1.54266 * 110.03332 * 272.16774 * 12 11 9 15 15 C 1.54889 * 104.19736 * 217.10575 * 14 12 11 16 16 C 1.54899 * 102.74882 * 37.94227 * 15 14 12 17 17 C 1.53881 * 110.03260 * 155.00014 * 12 11 9 18 18 H 1.09005 * 110.03080 * 238.61604 * 17 12 11 19 19 C 1.53001 * 110.02880 * 0.02562 * 17 12 11 20 20 N 1.46502 * 109.46587 * 185.00109 * 19 17 12 21 21 C 1.36942 * 119.99574 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00252 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99575 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00473 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99590 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47478 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47112 * 119.99980 * 25 23 21 28 28 H 1.48500 * 109.47149 * 239.99871 * 25 23 21 29 29 C 1.37560 * 106.99137 * 359.97438 * 4 3 2 30 30 N 1.31851 * 108.11050 * 359.75503 * 29 4 3 31 31 H 1.09002 * 109.47152 * 90.00154 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00254 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00235 * 1 2 3 34 34 H 1.08005 * 126.42553 * 0.02562 * 3 2 1 35 35 H 1.07998 * 119.73755 * 359.97101 * 5 4 3 36 36 H 1.08001 * 118.94730 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00203 * 0.02562 * 11 9 8 38 38 H 1.08997 * 110.48238 * 335.78519 * 14 12 11 39 39 H 1.08998 * 110.48962 * 98.43037 * 14 12 11 40 40 H 1.09001 * 110.75545 * 279.63106 * 15 14 12 41 41 H 1.09001 * 110.91616 * 156.32475 * 15 14 12 42 42 H 1.08998 * 110.48569 * 203.38264 * 16 15 14 43 43 H 1.08994 * 110.59817 * 80.78802 * 16 15 14 44 44 H 1.09000 * 109.46795 * 304.99306 * 19 17 12 45 45 H 1.08997 * 109.46993 * 65.00156 * 19 17 12 46 46 H 0.96998 * 120.00327 * 359.97438 * 20 19 17 47 47 H 0.97001 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6660 0.0006 5 6 4.7956 1.2955 0.0013 6 6 5.9450 0.5785 0.0023 7 7 5.9488 -0.7483 0.0013 8 6 4.8190 -1.4367 0.0000 9 6 4.8385 -2.9145 -0.0016 10 8 3.7939 -3.5362 -0.0033 11 7 6.0146 -3.5729 -0.0013 12 6 6.0340 -5.0377 -0.0035 13 1 5.1867 -5.4213 -0.5720 14 6 5.9845 -5.5691 1.4439 15 6 6.9083 -6.8121 1.4241 16 6 8.0572 -6.3693 0.4842 17 6 7.3518 -5.5466 -0.6137 18 1 7.1440 -6.1770 -1.4783 19 6 8.2294 -4.3632 -1.0265 20 7 9.4253 -4.8583 -1.7129 21 6 10.3637 -3.9752 -2.1762 22 1 10.2221 -2.9138 -2.0359 23 6 11.4970 -4.4443 -2.8261 24 7 11.6699 -5.7379 -2.9966 25 14 12.7769 -3.2396 -3.4587 26 1 12.3502 -1.8527 -3.1426 27 1 14.0821 -3.5162 -2.8065 28 1 12.9161 -3.3922 -4.9292 29 6 3.5501 -0.7091 0.0015 30 7 2.2863 -1.0847 0.0069 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.9651 2.1270 0.0004 35 1 4.8373 2.3747 0.0010 36 1 6.8887 1.1038 0.0033 37 1 6.8482 -3.0768 0.0004 38 1 6.3667 -4.8208 2.1382 39 1 4.9670 -5.8543 1.7111 40 1 6.3849 -7.6758 1.0139 41 1 7.2883 -7.0306 2.4221 42 1 8.5521 -7.2384 0.0509 43 1 8.7757 -5.7508 1.0220 44 1 7.6691 -3.7119 -1.6972 45 1 8.5253 -3.8034 -0.1393 46 1 9.5526 -5.8117 -1.8386 47 1 12.4621 -6.0658 -3.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496908430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:09 Heat of formation + Delta-G solvation = 82.999500 kcal Electronic energy + Delta-G solvation = -29675.442664 eV Core-core repulsion = 25667.110721 eV Total energy + Delta-G solvation = -4008.331943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.32322 -40.09898 -38.80248 -37.82349 -34.75386 -34.32475 -33.46970 -32.11664 -31.36759 -30.19464 -28.53511 -28.36375 -27.48071 -25.00432 -24.44527 -23.59900 -22.42729 -21.54542 -20.93283 -20.40971 -19.02112 -18.67854 -18.44003 -17.16437 -16.61012 -16.49648 -15.95276 -15.77949 -15.05954 -14.91713 -14.82475 -14.50413 -14.45204 -13.91099 -13.74367 -13.61058 -13.46724 -13.33053 -12.96563 -12.85207 -12.70032 -12.58208 -12.12034 -11.69243 -11.50022 -11.27777 -10.86550 -10.79577 -10.75181 -10.63693 -10.43465 -10.40716 -10.32567 -10.22847 -9.92199 -9.87728 -9.66152 -9.10948 -8.92679 -8.80110 -8.52286 -6.90017 -5.74860 -3.03118 -0.23644 0.87310 1.95956 2.41641 2.58853 2.93805 3.43724 3.48791 3.48948 3.51477 3.59633 3.75967 3.93428 4.24225 4.57426 4.68111 4.72252 4.77694 4.81983 4.88542 4.93321 5.17575 5.33744 5.36102 5.40353 5.52043 5.57667 5.63374 5.67425 5.72488 5.75319 5.82311 5.91683 5.99920 6.11823 6.20460 6.23444 6.27607 6.35429 6.40348 6.52381 6.64711 6.66486 6.78629 6.88241 7.11033 7.51170 7.66060 7.72238 8.24607 8.43999 9.55403 10.13382 10.48359 11.48117 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.002938 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.129412 B = 9527.615027 C =11481.510279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.057 3.943 3 C -0.084 4.084 4 N -0.355 5.355 5 C 0.032 3.968 6 C 0.034 3.966 7 N -0.420 5.420 8 C 0.181 3.819 9 C 0.570 3.430 10 O -0.503 6.503 11 N -0.697 5.697 12 C 0.148 3.852 13 H 0.093 0.907 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.112 4.112 17 C -0.108 4.108 18 H 0.084 0.916 19 C 0.157 3.843 20 N -0.728 5.728 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.196 3.804 30 N -0.432 5.432 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.417 0.583 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.897 13.566 10.006 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.217 4.217 4 N -0.029 5.029 5 C -0.094 4.094 6 C -0.107 4.107 7 N -0.136 5.136 8 C 0.015 3.985 9 C 0.352 3.648 10 O -0.375 6.375 11 N -0.352 5.352 12 C 0.044 3.956 13 H 0.111 0.889 14 C -0.171 4.171 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.127 4.127 18 H 0.102 0.898 19 C 0.029 3.971 20 N -0.373 5.373 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 C -0.052 4.052 30 N -0.153 5.153 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.206 0.794 35 H 0.194 0.806 36 H 0.204 0.796 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.973 12.256 9.964 24.687 hybrid contribution 0.905 2.224 -0.537 2.461 sum -18.068 14.480 9.427 25.000 Atomic orbital electron populations 1.20180 0.86260 1.03480 1.03107 1.21308 0.97391 0.87651 1.01277 1.22500 0.80277 1.01448 1.17525 1.42827 1.06331 1.09017 1.44702 1.22781 0.83066 1.00844 1.02695 1.22172 0.97829 0.89202 1.01488 1.68148 1.27256 1.08976 1.09174 1.22285 0.83868 0.95100 0.97278 1.17244 0.84905 0.84171 0.78515 1.90875 1.31732 1.66775 1.48146 1.46233 1.08560 1.07767 1.72644 1.21758 0.99115 0.78092 0.96677 0.88923 1.22771 1.00116 0.97903 0.96278 1.22485 0.96715 0.97164 0.99822 1.22363 0.96972 0.99829 0.95759 1.22236 0.93438 0.98378 0.98674 0.89801 1.20695 0.88218 0.93450 0.94763 1.42330 1.20076 1.06755 1.68095 1.19270 0.98506 0.89689 1.29305 0.91144 1.24731 0.98709 0.95877 1.01739 1.69667 1.29021 1.11346 1.48128 0.86137 0.81730 0.80128 0.78316 1.20589 1.21924 1.21951 1.22474 0.94636 0.80262 1.07818 1.70580 0.97706 1.28515 1.18479 0.90421 0.90662 0.90219 0.79352 0.80631 0.79553 0.74277 0.91255 0.91295 0.91515 0.91623 0.91164 0.90951 0.95996 0.96273 0.78171 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C 0.06 0.64 7.07 -82.87 -0.59 0.05 16 3 C -0.08 -0.76 11.70 -16.66 -0.19 -0.95 16 4 N -0.36 -3.84 2.95 -61.12 -0.18 -4.03 16 5 C 0.03 0.25 11.00 -16.59 -0.18 0.06 16 6 C 0.03 0.31 11.01 -18.17 -0.20 0.11 16 7 N -0.42 -5.43 9.67 -8.68 -0.08 -5.51 16 8 C 0.18 2.68 6.97 -80.53 -0.56 2.12 16 9 C 0.57 9.32 7.81 -12.35 -0.10 9.22 16 10 O -0.50 -9.46 15.88 5.31 0.08 -9.38 16 11 N -0.70 -10.61 4.38 -53.67 -0.24 -10.85 16 12 C 0.15 2.20 3.23 -66.81 -0.22 1.99 16 13 H 0.09 1.43 7.57 -51.92 -0.39 1.04 16 14 C -0.13 -1.74 6.53 -25.07 -0.16 -1.90 16 15 C -0.12 -1.54 6.91 -24.73 -0.17 -1.71 16 16 C -0.11 -1.69 6.08 -25.07 -0.15 -1.85 16 17 C -0.11 -1.76 2.96 -89.50 -0.27 -2.03 16 18 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 19 C 0.16 3.09 4.18 -4.04 -0.02 3.07 16 20 N -0.73 -18.15 5.45 -59.91 -0.33 -18.48 16 21 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 25 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.20 2.86 7.66 -153.99 -1.18 1.68 16 30 N -0.43 -6.65 10.74 -7.53 -0.08 -6.73 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.42 6.34 5.27 -40.82 -0.22 6.12 16 38 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 44 H 0.02 0.46 7.42 -51.93 -0.39 0.07 16 45 H 0.02 0.38 7.10 -51.93 -0.37 0.01 16 46 H 0.38 10.09 7.55 -40.82 -0.31 9.78 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -35.79 388.19 -9.82 -45.61 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.69 Total: 11.12 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.86 Total: 2.49 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.18 Total: -72.99 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.79 -9.82 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496908430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.605 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds