Wall clock time and date at job start Wed Apr 1 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30282 * 124.96908 * 2 1 4 4 C 1.34658 * 109.67189 * 180.02562 * 3 2 1 5 5 C 1.40837 * 107.25875 * 0.26348 * 4 3 2 6 6 N 1.32106 * 120.46395 * 180.37888 * 5 4 3 7 7 C 1.31736 * 121.94759 * 359.71975 * 6 5 4 8 8 C 1.38333 * 121.54404 * 359.97245 * 7 6 5 9 9 C 1.39640 * 119.37864 * 0.03120 * 8 7 6 10 10 C 1.47766 * 121.07158 * 179.97438 * 9 8 7 11 11 O 1.21558 * 119.99679 * 126.47615 * 10 9 8 12 12 N 1.34774 * 119.99961 * 306.47283 * 10 9 8 13 13 C 1.46927 * 120.62800 * 174.12317 * 12 10 9 14 14 C 1.53195 * 108.77703 * 126.40966 * 13 12 10 15 15 C 1.53042 * 109.30981 * 54.63238 * 14 13 12 16 16 C 1.52998 * 109.45893 * 178.62829 * 15 14 13 17 17 N 1.46507 * 109.45923 * 58.65613 * 15 14 13 18 18 C 1.36929 * 120.00064 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00106 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99960 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00000 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47118 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47085 * 300.00104 * 22 20 18 25 25 H 1.48495 * 109.47361 * 59.99900 * 22 20 18 26 26 C 1.53038 * 109.52966 * 298.64352 * 15 14 13 27 27 C 1.46918 * 120.63219 * 354.14293 * 12 10 9 28 28 N 1.36001 * 124.97635 * 180.71812 * 2 1 3 29 29 H 0.97002 * 126.34772 * 359.31062 * 28 2 1 30 30 H 1.08999 * 109.47577 * 89.97747 * 1 2 3 31 31 H 1.09008 * 109.46916 * 209.96916 * 1 2 3 32 32 H 1.09001 * 109.47559 * 329.96763 * 1 2 3 33 33 H 1.08004 * 119.22628 * 180.02562 * 7 6 5 34 34 H 1.08003 * 120.30940 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.58821 * 6.62861 * 13 12 10 36 36 H 1.08999 * 109.58633 * 246.20094 * 13 12 10 37 37 H 1.09004 * 109.49653 * 294.68831 * 14 13 12 38 38 H 1.08998 * 109.52690 * 174.60258 * 14 13 12 39 39 H 1.09002 * 109.47191 * 300.02960 * 16 15 14 40 40 H 1.08999 * 109.47407 * 60.02799 * 16 15 14 41 41 H 1.09001 * 109.47003 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99709 * 359.97076 * 17 15 14 43 43 H 0.96997 * 119.99753 * 359.97438 * 21 20 18 44 44 H 1.09000 * 109.49651 * 181.30632 * 26 15 14 45 45 H 1.08995 * 109.49535 * 301.40694 * 26 15 14 46 46 H 1.08997 * 109.58955 * 353.37314 * 27 12 10 47 47 H 1.08996 * 109.58694 * 113.80142 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2536 1.0676 0.0000 4 6 3.5525 0.7123 -0.0006 5 6 3.6007 -0.6952 -0.0071 6 7 4.7616 -1.3256 -0.0016 7 6 5.9076 -0.6759 0.0047 8 6 5.9558 0.7065 0.0052 9 6 4.7636 1.4336 -0.0003 10 6 4.7714 2.9112 0.0006 11 8 4.1530 3.5227 -0.8487 12 7 5.4640 3.5808 0.9431 13 6 5.5877 5.0437 0.8833 14 6 5.1286 5.6325 2.2209 15 6 5.9183 4.9808 3.3584 16 6 5.4866 5.5909 4.6934 17 7 7.3502 5.2149 3.1551 18 6 8.2588 4.7223 4.0532 19 1 7.9199 4.1616 4.9118 20 6 9.6154 4.9446 3.8608 21 7 10.0283 5.6293 2.8153 22 14 10.8550 4.2720 5.0858 23 1 12.2270 4.6442 4.6566 24 1 10.5846 4.8448 6.4289 25 1 10.7389 2.7928 5.1460 26 6 5.6450 3.4751 3.3739 27 6 6.1101 2.8619 2.0495 28 7 2.2866 -1.1143 -0.0140 29 1 1.9760 -2.0332 -0.0161 30 1 -0.3634 0.0004 -1.0276 31 1 -0.3633 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5143 33 1 6.8312 -1.2358 0.0087 34 1 6.9066 1.2188 0.0108 35 1 4.9614 5.4308 0.0795 36 1 6.6276 5.3153 0.7021 37 1 4.0649 5.4375 2.3583 38 1 5.3048 6.7081 2.2252 39 1 5.6816 6.6633 4.6828 40 1 4.4213 5.4169 4.8449 41 1 6.0493 5.1273 5.5037 42 1 7.6545 5.7189 2.3841 43 1 9.3847 5.9782 2.1791 44 1 6.1895 3.0150 4.1985 45 1 4.5766 3.3006 3.5003 46 1 5.8285 1.8095 2.0154 47 1 7.1926 2.9556 1.9636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673972425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:14 Heat of formation + Delta-G solvation = 69.834623 kcal Electronic energy + Delta-G solvation = -30841.137628 eV Core-core repulsion = 26832.234813 eV Total energy + Delta-G solvation = -4008.902815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.66569 -40.11127 -38.53613 -37.71876 -34.63428 -33.91432 -32.63592 -31.81644 -31.69970 -30.54819 -28.77703 -28.37804 -27.68549 -24.64545 -23.68451 -23.33715 -22.83739 -22.38429 -21.35213 -20.23532 -18.86426 -17.99273 -17.61668 -17.11224 -16.96011 -16.22629 -15.83542 -15.45889 -15.04195 -14.85306 -14.53926 -14.12141 -13.81911 -13.79804 -13.61978 -13.54915 -13.44218 -13.25863 -12.95798 -12.56437 -12.45091 -12.42412 -12.16851 -11.59104 -11.41442 -11.27013 -11.26084 -11.13108 -10.81977 -10.76967 -10.54169 -10.28643 -9.99411 -9.98028 -9.83155 -9.29708 -9.09593 -9.02405 -8.91657 -8.61990 -8.26440 -7.03688 -6.08999 -3.09584 0.33829 0.98338 2.20442 2.47477 2.82350 3.16071 3.50097 3.52785 3.63738 3.69297 3.70454 4.11549 4.38953 4.52000 4.65338 4.69512 4.85591 4.95606 5.03267 5.20268 5.22422 5.29484 5.36643 5.40777 5.53463 5.55235 5.59320 5.70569 5.72375 5.73885 5.86546 5.99920 6.01278 6.11844 6.20412 6.33669 6.35442 6.39151 6.45599 6.52853 6.69945 6.78879 6.81590 6.96482 7.01928 7.51398 7.61269 7.66020 7.81612 8.32422 8.75443 9.21936 10.08591 10.24779 11.38736 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.003296 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.599145 B = 8492.314736 C = 9278.090560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.296 3.704 3 N -0.471 5.471 4 C 0.047 3.953 5 C 0.236 3.764 6 N -0.474 5.474 7 C 0.137 3.863 8 C -0.148 4.148 9 C -0.020 4.020 10 C 0.562 3.438 11 O -0.529 6.529 12 N -0.591 5.591 13 C 0.119 3.881 14 C -0.131 4.131 15 C 0.203 3.797 16 C -0.148 4.148 17 N -0.728 5.728 18 C -0.322 4.322 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.945 5.945 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.296 1.296 26 C -0.132 4.132 27 C 0.114 3.886 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 -13.704 -4.522 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.029 3.971 3 N -0.192 5.192 4 C -0.076 4.076 5 C -0.001 4.001 6 N -0.187 5.187 7 C -0.029 4.029 8 C -0.170 4.170 9 C -0.033 4.033 10 C 0.349 3.651 11 O -0.406 6.406 12 N -0.324 5.324 13 C -0.004 4.004 14 C -0.169 4.169 15 C 0.112 3.888 16 C -0.208 4.208 17 N -0.372 5.372 18 C -0.453 4.453 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.906 3.094 23 H -0.212 1.212 24 H -0.225 1.225 25 H -0.224 1.224 26 C -0.173 4.173 27 C -0.008 4.008 28 N -0.202 5.202 29 H 0.267 0.733 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.192 0.808 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.478 -13.592 -4.421 21.068 hybrid contribution -1.280 -0.267 -0.342 1.351 sum -16.758 -13.859 -4.763 22.262 Atomic orbital electron populations 1.20433 0.83345 1.05090 1.04631 1.23833 0.95935 0.80219 0.97124 1.70199 1.00586 1.27321 1.21053 1.19171 0.92071 0.91162 1.05201 1.18860 0.86206 0.90741 1.04252 1.66206 0.96006 1.41448 1.15079 1.22527 0.94202 0.91239 0.94933 1.22249 0.98167 0.95436 1.01184 1.19547 0.90887 0.94138 0.98750 1.17942 0.79064 0.86085 0.82047 1.90773 1.42627 1.68678 1.38504 1.48013 1.51252 1.07833 1.25253 1.21579 1.02010 0.78454 0.98307 1.22109 0.99844 1.00283 0.94701 1.19457 0.85351 0.91708 0.92282 1.22189 0.98424 1.00891 0.99269 1.42516 0.99576 1.65916 1.29146 1.19907 0.89354 1.31314 1.04697 0.91784 1.25631 0.95956 1.00646 1.01926 1.70888 1.36227 1.38440 1.13462 0.83304 0.76418 0.75240 0.74430 1.21200 1.22477 1.22352 1.22267 0.99176 0.98964 0.96872 1.21835 0.99016 0.94467 0.85485 1.42699 1.03594 1.10446 1.63436 0.73260 0.88929 0.89837 0.88036 0.80818 0.82814 0.89611 0.90733 0.91671 0.90798 0.93239 0.94553 0.92480 0.79915 0.93429 0.90566 0.93395 0.91371 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.30 3.13 8.08 -154.72 -1.25 1.88 16 3 N -0.47 -7.27 11.23 -8.07 -0.09 -7.36 16 4 C 0.05 0.74 7.00 -84.61 -0.59 0.15 16 5 C 0.24 3.18 8.46 -155.65 -1.32 1.87 16 6 N -0.47 -6.10 10.35 -12.30 -0.13 -6.23 16 7 C 0.14 1.54 11.14 -17.56 -0.20 1.35 16 8 C -0.15 -1.90 7.89 -39.02 -0.31 -2.21 16 9 C -0.02 -0.32 4.65 -104.45 -0.49 -0.81 16 10 C 0.56 10.24 7.24 -12.37 -0.09 10.15 16 11 O -0.53 -11.18 16.51 5.31 0.09 -11.09 16 12 N -0.59 -10.23 2.97 -173.93 -0.52 -10.75 16 13 C 0.12 2.05 6.17 -3.71 -0.02 2.02 16 14 C -0.13 -2.20 4.96 -26.61 -0.13 -2.33 16 15 C 0.20 3.80 0.74 -131.77 -0.10 3.70 16 16 C -0.15 -2.69 8.44 37.16 0.31 -2.37 16 17 N -0.73 -16.40 4.13 -47.19 -0.19 -16.60 16 18 C -0.32 -8.19 8.68 -15.06 -0.13 -8.32 16 19 H 0.06 1.62 6.70 -52.49 -0.35 1.27 16 20 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 21 N -0.94 -27.75 13.70 55.49 0.76 -26.99 16 22 Si 1.07 24.85 29.92 -169.99 -5.09 19.76 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.13 -2.33 4.70 -26.62 -0.13 -2.46 16 27 C 0.11 1.93 5.35 -3.73 -0.02 1.91 16 28 N -0.59 -5.74 6.23 -9.43 -0.06 -5.80 16 29 H 0.43 2.55 8.96 -40.82 -0.37 2.18 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.15 1.78 7.78 -52.48 -0.41 1.38 16 35 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 36 H 0.07 1.35 6.94 -51.93 -0.36 0.99 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.10 7.27 -51.93 -0.38 0.73 16 42 H 0.37 8.71 5.29 -40.82 -0.22 8.49 16 43 H 0.25 7.36 6.77 -40.82 -0.28 7.09 16 44 H 0.08 1.41 7.31 -51.93 -0.38 1.03 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.05 5.38 -51.93 -0.28 0.77 16 47 H 0.09 1.73 7.74 -51.93 -0.40 1.33 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -35.32 376.22 -10.11 -45.43 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.38 Total: 10.75 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -4.17 Total: 3.21 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.23 Total: -73.73 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.32 -10.11 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673972425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.260 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds