Wall clock time and date at job start Wed Apr 1 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30055 * 124.94251 * 2 1 4 4 C 1.35775 * 109.43207 * 179.97438 * 3 2 1 5 5 C 1.39494 * 133.74310 * 180.02562 * 4 3 2 6 6 C 1.39664 * 118.05110 * 180.02562 * 5 4 3 7 7 C 1.47694 * 120.38432 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99291 * 359.95325 * 7 6 5 9 9 N 1.34768 * 120.00300 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99863 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47365 * 175.12655 * 10 9 7 12 12 N 1.46502 * 110.01273 * 303.90705 * 11 10 9 13 13 C 1.36941 * 119.99573 * 301.45315 * 12 11 10 14 14 H 1.07999 * 120.00320 * 354.61284 * 13 12 11 15 15 C 1.38812 * 119.99412 * 174.61174 * 13 12 11 16 16 N 1.31614 * 120.00323 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99671 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47141 * 59.99985 * 17 15 13 19 19 H 1.48507 * 109.47042 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47008 * 299.99526 * 17 15 13 21 21 C 1.54259 * 110.03469 * 182.45931 * 11 10 9 22 22 C 1.54887 * 104.19756 * 217.10184 * 21 11 10 23 23 C 1.54895 * 102.74344 * 37.94650 * 22 21 11 24 24 C 1.53878 * 110.03173 * 65.29227 * 11 10 9 25 25 C 1.39984 * 119.23817 * 359.89356 * 6 5 4 26 26 N 1.31385 * 121.15685 * 0.08072 * 25 6 5 27 27 C 1.32546 * 121.79623 * 359.97112 * 26 25 6 28 28 N 1.36168 * 124.94335 * 179.69714 * 2 1 3 29 29 H 0.97008 * 126.23550 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.46854 * 90.01779 * 1 2 3 31 31 H 1.08998 * 109.47213 * 210.01769 * 1 2 3 32 32 H 1.08995 * 109.47105 * 330.02610 * 1 2 3 33 33 H 1.07992 * 120.97125 * 359.94868 * 5 4 3 34 34 H 0.96994 * 120.00295 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47493 * 295.12813 * 10 9 7 36 36 H 1.09004 * 109.47600 * 55.12846 * 10 9 7 37 37 H 0.97001 * 120.00364 * 121.46416 * 12 11 10 38 38 H 0.97006 * 119.99874 * 180.02562 * 16 15 13 39 39 H 1.08994 * 110.49083 * 335.78446 * 21 11 10 40 40 H 1.09003 * 110.48601 * 98.42432 * 21 11 10 41 41 H 1.08999 * 110.75831 * 279.63248 * 22 21 11 42 42 H 1.08998 * 110.75795 * 156.25710 * 22 21 11 43 43 H 1.09003 * 110.48184 * 203.37714 * 23 22 21 44 44 H 1.08999 * 110.48844 * 80.74073 * 23 22 21 45 45 H 1.08999 * 110.02996 * 238.57383 * 24 11 10 46 46 H 1.08999 * 110.03072 * 0.02562 * 24 11 10 47 47 H 1.08000 * 119.42324 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7030 0.0006 5 6 4.7591 1.4162 0.0013 6 6 5.9537 0.6926 0.0012 7 6 7.2528 1.3954 0.0013 8 8 7.2863 2.6107 0.0007 9 7 8.4008 0.6895 0.0018 10 6 9.6893 1.3867 0.0025 11 6 10.8219 0.3653 0.1254 12 7 10.6309 -0.4531 1.3254 13 6 10.5652 0.1424 2.5569 14 1 10.7407 1.2036 2.6536 15 6 10.2730 -0.6182 3.6807 16 7 10.0586 -1.9114 3.5627 17 14 10.1826 0.1941 5.3605 18 1 9.1267 1.2381 5.3493 19 1 9.8569 -0.8278 6.3876 20 1 11.4920 0.8177 5.6798 21 6 12.1822 1.0898 0.1895 22 6 13.1388 0.1735 -0.6133 23 6 12.2425 -0.3216 -1.7755 24 6 10.8602 -0.5321 -1.1240 25 6 5.9057 -0.7064 0.0027 26 7 4.7588 -1.3472 0.0025 27 6 3.5996 -0.7044 0.0016 28 7 2.2870 -1.1162 0.0059 29 1 1.9740 -2.0344 0.0104 30 1 -0.3633 -0.0003 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 4.7634 2.4961 0.0006 34 1 8.3741 -0.2800 0.0023 35 1 9.8017 1.9436 -0.9278 36 1 9.7289 2.0763 0.8458 37 1 10.5511 -1.4167 1.2477 38 1 9.8540 -2.4427 4.3481 39 1 12.1137 2.0722 -0.2776 40 1 12.5180 1.1802 1.2225 41 1 13.4757 -0.6635 -0.0017 42 1 13.9876 0.7409 -0.9948 43 1 12.6223 -1.2613 -2.1765 44 1 12.1837 0.4329 -2.5600 45 1 10.7376 -1.5766 -0.8373 46 1 10.0722 -0.2397 -1.8180 47 1 6.8277 -1.2689 0.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753664447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:45 Heat of formation + Delta-G solvation = 52.512837 kcal Electronic energy + Delta-G solvation = -29857.582753 eV Core-core repulsion = 25847.928809 eV Total energy + Delta-G solvation = -4009.653944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.54214 -39.76008 -38.50491 -37.63757 -34.18504 -33.77165 -33.33989 -31.84383 -31.44514 -30.59899 -28.64019 -28.25306 -27.47364 -24.89058 -23.73011 -23.13645 -22.87729 -21.38351 -20.62794 -19.91844 -18.74812 -18.53493 -17.84675 -16.98376 -16.65311 -16.12860 -16.08737 -15.60374 -14.89751 -14.70433 -14.61038 -14.14776 -13.86642 -13.77188 -13.68762 -13.41364 -13.31542 -13.10556 -12.85934 -12.79438 -12.60869 -12.24141 -11.89383 -11.44947 -11.27416 -11.20215 -11.09859 -10.76441 -10.73196 -10.63850 -10.53135 -10.24592 -10.14056 -9.87364 -9.82147 -9.64430 -9.23337 -8.99799 -8.90400 -8.62489 -8.41568 -7.01497 -5.80512 -3.09468 0.65293 0.80304 2.27580 2.51050 3.12520 3.43565 3.44821 3.48425 3.50817 3.85757 3.95094 4.17109 4.48134 4.57385 4.79100 4.82565 4.92421 4.98878 5.02193 5.10914 5.12117 5.23538 5.33519 5.40907 5.56270 5.65846 5.68530 5.77140 5.93950 5.94532 5.99449 6.01864 6.09082 6.17615 6.25626 6.30817 6.36889 6.44377 6.55602 6.59566 6.77234 6.81950 6.86359 6.97707 7.07479 7.48555 7.70352 7.71315 7.99618 8.38022 8.62527 9.50215 10.03331 10.38666 11.41270 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003163 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.924214 B = 8851.614077 C =10160.320106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.477 5.477 4 C -0.007 4.007 5 C 0.042 3.958 6 C -0.188 4.188 7 C 0.564 3.436 8 O -0.549 6.549 9 N -0.691 5.691 10 C 0.120 3.880 11 C 0.188 3.812 12 N -0.711 5.711 13 C -0.234 4.234 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.931 5.931 17 Si 0.899 3.101 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.181 3.819 26 N -0.484 5.484 27 C 0.255 3.745 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 -0.302 -11.969 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 N -0.197 5.197 4 C -0.127 4.127 5 C 0.014 3.986 6 C -0.196 4.196 7 C 0.350 3.650 8 O -0.428 6.428 9 N -0.340 5.340 10 C -0.006 4.006 11 C 0.096 3.904 12 N -0.352 5.352 13 C -0.365 4.365 14 H 0.087 0.913 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.730 3.270 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.172 4.172 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.165 4.165 25 C 0.012 3.988 26 N -0.196 5.196 27 C 0.019 3.981 28 N -0.201 5.201 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.172 0.828 34 H 0.237 0.763 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.840 0.625 -11.796 17.447 hybrid contribution 0.063 -0.888 1.208 1.501 sum -12.777 -0.263 -10.588 16.596 Atomic orbital electron populations 1.20417 0.83433 1.05060 1.04515 1.23696 0.95786 0.80368 0.97941 1.70435 1.00370 1.27467 1.21468 1.19543 0.92731 0.91642 1.08771 1.20818 0.87364 1.01201 0.89205 1.20785 0.94653 0.94918 1.09271 1.17712 0.83330 0.86887 0.77120 1.90747 1.87520 1.13281 1.51262 1.45612 1.05310 1.10520 1.72606 1.21946 0.82396 0.95706 1.00563 1.20475 0.91785 0.90528 0.87635 1.42546 1.86672 1.05464 1.00535 1.19033 1.39904 0.93148 0.84401 0.91281 1.24660 1.02276 0.95620 0.97708 1.69629 1.54660 1.04619 1.28942 0.86390 0.77890 0.78182 0.84497 1.21288 1.21829 1.21281 1.22817 0.96004 0.97182 1.01152 1.22386 0.97085 0.99471 0.96524 1.22299 0.95634 1.00238 0.97645 1.22449 0.97028 1.00427 0.96625 1.22845 0.94428 0.90583 0.90932 1.66418 0.95735 1.40522 1.16974 1.19093 0.86178 0.91230 1.01583 1.42675 1.03706 1.10543 1.63187 0.73266 0.89044 0.89862 0.88167 0.82760 0.76300 0.92811 0.91169 0.78102 0.93545 0.92876 0.90258 0.91406 0.92746 0.92375 0.92271 0.91219 0.91990 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.29 2.92 8.08 -154.74 -1.25 1.67 16 3 N -0.48 -6.63 11.29 -8.20 -0.09 -6.73 16 4 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 5 C 0.04 0.67 9.75 -38.58 -0.38 0.29 16 6 C -0.19 -3.05 5.89 -104.85 -0.62 -3.67 16 7 C 0.56 10.26 7.77 -12.40 -0.10 10.16 16 8 O -0.55 -11.50 16.40 5.30 0.09 -11.41 16 9 N -0.69 -11.93 5.05 -61.29 -0.31 -12.24 16 10 C 0.12 2.14 3.99 -4.04 -0.02 2.12 16 11 C 0.19 3.28 0.68 -130.70 -0.09 3.19 16 12 N -0.71 -15.47 4.76 -46.19 -0.22 -15.69 16 13 C -0.23 -5.93 8.39 -15.06 -0.13 -6.06 16 14 H 0.07 1.77 7.23 -52.49 -0.38 1.39 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 16 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 17 Si 0.90 22.17 29.55 -169.99 -5.02 17.15 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.13 -2.19 5.94 -25.08 -0.15 -2.34 16 22 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 23 C -0.12 -1.57 6.83 -25.07 -0.17 -1.75 16 24 C -0.13 -1.85 5.80 -25.62 -0.15 -2.00 16 25 C 0.18 2.73 10.69 -17.09 -0.18 2.55 16 26 N -0.48 -7.39 10.36 -11.96 -0.12 -7.51 16 27 C 0.26 3.69 8.45 -155.64 -1.31 2.37 16 28 N -0.59 -6.04 6.20 -9.44 -0.06 -6.10 16 29 H 0.43 2.92 8.96 -40.82 -0.37 2.55 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.15 2.39 7.72 -52.49 -0.41 1.99 16 34 H 0.40 6.49 6.03 -40.82 -0.25 6.24 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 37 H 0.38 8.96 7.28 -40.82 -0.30 8.66 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 40 H 0.08 1.53 7.12 -51.93 -0.37 1.16 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 46 H 0.06 0.83 7.55 -51.93 -0.39 0.43 16 47 H 0.17 2.32 6.39 -52.49 -0.34 1.99 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.16 384.91 -10.74 -43.90 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.49 Total: 14.78 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -5.04 Total: 3.70 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -0.08 Total: -73.92 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.16 -10.74 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753664447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.415 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds