Wall clock time and date at job start Wed Apr 1 2020 03:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30055 * 124.94251 * 2 1 4 4 C 1.35775 * 109.43207 * 179.97438 * 3 2 1 5 5 C 1.39494 * 133.74310 * 180.02562 * 4 3 2 6 6 C 1.39664 * 118.05110 * 180.02562 * 5 4 3 7 7 C 1.47694 * 120.38432 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99291 * 359.95325 * 7 6 5 9 9 N 1.34768 * 120.00300 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99863 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47365 * 175.12655 * 10 9 7 12 12 N 1.46502 * 110.01273 * 303.90705 * 11 10 9 13 13 C 1.36941 * 119.99573 * 301.45315 * 12 11 10 14 14 H 1.07999 * 120.00320 * 354.61284 * 13 12 11 15 15 C 1.38812 * 119.99412 * 174.61174 * 13 12 11 16 16 N 1.31614 * 120.00323 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99671 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47141 * 59.99985 * 17 15 13 19 19 H 1.48507 * 109.47042 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47008 * 299.99526 * 17 15 13 21 21 C 1.54259 * 110.03469 * 182.45931 * 11 10 9 22 22 C 1.54887 * 104.19756 * 217.10184 * 21 11 10 23 23 C 1.54895 * 102.74344 * 37.94650 * 22 21 11 24 24 C 1.53878 * 110.03173 * 65.29227 * 11 10 9 25 25 C 1.39984 * 119.23817 * 359.89356 * 6 5 4 26 26 N 1.31385 * 121.15685 * 0.08072 * 25 6 5 27 27 C 1.32546 * 121.79623 * 359.97112 * 26 25 6 28 28 N 1.36168 * 124.94335 * 179.69714 * 2 1 3 29 29 H 0.97008 * 126.23550 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.46854 * 90.01779 * 1 2 3 31 31 H 1.08998 * 109.47213 * 210.01769 * 1 2 3 32 32 H 1.08995 * 109.47105 * 330.02610 * 1 2 3 33 33 H 1.07992 * 120.97125 * 359.94868 * 5 4 3 34 34 H 0.96994 * 120.00295 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47493 * 295.12813 * 10 9 7 36 36 H 1.09004 * 109.47600 * 55.12846 * 10 9 7 37 37 H 0.97001 * 120.00364 * 121.46416 * 12 11 10 38 38 H 0.97006 * 119.99874 * 180.02562 * 16 15 13 39 39 H 1.08994 * 110.49083 * 335.78446 * 21 11 10 40 40 H 1.09003 * 110.48601 * 98.42432 * 21 11 10 41 41 H 1.08999 * 110.75831 * 279.63248 * 22 21 11 42 42 H 1.08998 * 110.75795 * 156.25710 * 22 21 11 43 43 H 1.09003 * 110.48184 * 203.37714 * 23 22 21 44 44 H 1.08999 * 110.48844 * 80.74073 * 23 22 21 45 45 H 1.08999 * 110.02996 * 238.57383 * 24 11 10 46 46 H 1.08999 * 110.03072 * 0.02562 * 24 11 10 47 47 H 1.08000 * 119.42324 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7030 0.0006 5 6 4.7591 1.4162 0.0013 6 6 5.9537 0.6926 0.0012 7 6 7.2528 1.3954 0.0013 8 8 7.2863 2.6107 0.0007 9 7 8.4008 0.6895 0.0018 10 6 9.6893 1.3867 0.0025 11 6 10.8219 0.3653 0.1254 12 7 10.6309 -0.4531 1.3254 13 6 10.5652 0.1424 2.5569 14 1 10.7407 1.2036 2.6536 15 6 10.2730 -0.6182 3.6807 16 7 10.0586 -1.9114 3.5627 17 14 10.1826 0.1941 5.3605 18 1 9.1267 1.2381 5.3493 19 1 9.8569 -0.8278 6.3876 20 1 11.4920 0.8177 5.6798 21 6 12.1822 1.0898 0.1895 22 6 13.1388 0.1735 -0.6133 23 6 12.2425 -0.3216 -1.7755 24 6 10.8602 -0.5321 -1.1240 25 6 5.9057 -0.7064 0.0027 26 7 4.7588 -1.3472 0.0025 27 6 3.5996 -0.7044 0.0016 28 7 2.2870 -1.1162 0.0059 29 1 1.9740 -2.0344 0.0104 30 1 -0.3633 -0.0003 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 4.7634 2.4961 0.0006 34 1 8.3741 -0.2800 0.0023 35 1 9.8017 1.9436 -0.9278 36 1 9.7289 2.0763 0.8458 37 1 10.5511 -1.4167 1.2477 38 1 9.8540 -2.4427 4.3481 39 1 12.1137 2.0722 -0.2776 40 1 12.5180 1.1802 1.2225 41 1 13.4757 -0.6635 -0.0017 42 1 13.9876 0.7409 -0.9948 43 1 12.6223 -1.2613 -2.1765 44 1 12.1837 0.4329 -2.5600 45 1 10.7376 -1.5766 -0.8373 46 1 10.0722 -0.2397 -1.8180 47 1 6.8277 -1.2689 0.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753664447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:44 Heat of formation + Delta-G solvation = 30.112474 kcal Electronic energy + Delta-G solvation = -29858.554106 eV Core-core repulsion = 25847.928809 eV Total energy + Delta-G solvation = -4010.625297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.55305 -41.13935 -39.80583 -38.92947 -35.60945 -35.16014 -34.84542 -32.83358 -32.47733 -32.21806 -29.86152 -29.50186 -28.73875 -26.36447 -25.31144 -24.44002 -24.05898 -22.36027 -21.85652 -21.18886 -20.16693 -19.58615 -19.16355 -18.84144 -17.86145 -17.31194 -17.11015 -17.03122 -16.28098 -16.22055 -15.97515 -15.74099 -15.16426 -15.06108 -14.76262 -14.51503 -14.44399 -14.30238 -14.11962 -13.99378 -13.49393 -13.31301 -13.18870 -12.98194 -12.90450 -12.45660 -12.38565 -12.35597 -12.23153 -12.13195 -11.84141 -11.68938 -11.55563 -11.34940 -11.30225 -11.22537 -10.84439 -10.43518 -10.20821 -9.88222 -9.63454 -8.91754 -7.88915 -5.13254 -0.49369 -0.34787 1.36643 1.44162 1.46584 1.50217 1.55206 1.78840 2.14841 2.57716 2.69031 2.90466 3.18954 3.42591 3.49540 3.63018 3.72741 3.81107 3.88579 3.90408 3.99209 4.15664 4.21549 4.42449 4.48809 4.62543 4.71802 4.72509 4.76840 4.77289 4.81591 4.85791 4.92013 5.01524 5.09296 5.11027 5.17861 5.23081 5.28498 5.31818 5.44253 5.48820 5.59801 5.65515 5.69692 6.04744 6.35042 6.51809 6.57584 6.62864 7.18955 7.43151 8.17007 8.41432 9.33011 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.003163 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.924214 B = 8851.614077 C =10160.320106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.314 3.686 3 N -0.517 5.517 4 C -0.020 4.020 5 C 0.030 3.970 6 C -0.196 4.196 7 C 0.564 3.436 8 O -0.582 6.582 9 N -0.686 5.686 10 C 0.125 3.875 11 C 0.184 3.816 12 N -0.713 5.713 13 C -0.212 4.212 14 H 0.063 0.937 15 C -0.061 4.061 16 N -0.957 5.957 17 Si 0.943 3.057 18 H -0.294 1.294 19 H -0.298 1.298 20 H -0.282 1.282 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.122 4.122 25 C 0.176 3.824 26 N -0.489 5.489 27 C 0.244 3.756 28 N -0.572 5.572 29 H 0.445 0.555 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.377 0.623 38 H 0.247 0.753 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 -0.987 -13.758 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.046 3.954 3 N -0.239 5.239 4 C -0.139 4.139 5 C 0.002 3.998 6 C -0.204 4.204 7 C 0.351 3.649 8 O -0.464 6.464 9 N -0.335 5.335 10 C -0.001 4.001 11 C 0.093 3.907 12 N -0.353 5.353 13 C -0.345 4.345 14 H 0.081 0.919 15 C -0.254 4.254 16 N -0.608 5.608 17 Si 0.775 3.225 18 H -0.221 1.221 19 H -0.224 1.224 20 H -0.208 1.208 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.160 4.160 25 C 0.008 3.992 26 N -0.201 5.201 27 C 0.006 3.994 28 N -0.189 5.189 29 H 0.289 0.711 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.244 0.756 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.211 0.789 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.252 -0.071 -13.614 19.709 hybrid contribution 0.361 -0.614 1.695 1.839 sum -13.891 -0.685 -11.918 18.316 Atomic orbital electron populations 1.20761 0.79187 1.06843 1.06496 1.24818 0.97611 0.79209 0.93771 1.70478 0.99856 1.29316 1.24235 1.19700 0.93328 0.92221 1.08696 1.20828 0.87958 1.01070 0.89894 1.20583 0.93656 0.95350 1.10856 1.17999 0.84101 0.86542 0.76288 1.90717 1.88046 1.14705 1.52965 1.45582 1.05016 1.10764 1.72134 1.21878 0.82714 0.95399 1.00103 1.20742 0.91889 0.90704 0.87370 1.42614 1.86409 1.05419 1.00885 1.19180 1.36802 0.92708 0.85760 0.91941 1.25142 1.04108 0.96169 0.99985 1.69729 1.57020 1.05314 1.28767 0.85664 0.77605 0.77035 0.82170 1.22087 1.22391 1.20815 1.22775 0.95783 0.98660 0.99959 1.22353 0.97613 0.98546 0.96557 1.22291 0.93728 1.01685 0.97249 1.22409 0.98967 0.99314 0.95315 1.22952 0.95054 0.90098 0.91143 1.66465 0.96037 1.40491 1.17131 1.19353 0.87309 0.91207 1.01537 1.42752 1.02061 1.11809 1.62230 0.71102 0.86714 0.86694 0.87699 0.83391 0.75594 0.90872 0.94493 0.78936 0.94420 0.91121 0.93442 0.93263 0.90500 0.90781 0.90188 0.91676 0.90308 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.31 5.56 8.08 137.90 1.11 6.67 16 3 N -0.52 -13.96 11.29 -179.86 -2.03 -15.99 16 4 C -0.02 -0.62 7.23 39.46 0.29 -0.34 16 5 C 0.03 1.00 9.75 22.92 0.22 1.22 16 6 C -0.20 -6.54 5.89 -20.01 -0.12 -6.66 16 7 C 0.56 21.05 7.77 86.74 0.67 21.73 16 8 O -0.58 -25.22 16.40 -3.95 -0.06 -25.29 16 9 N -0.69 -23.87 5.05 -466.10 -2.36 -26.22 16 10 C 0.12 4.45 3.99 86.38 0.34 4.80 16 11 C 0.18 6.30 0.68 4.33 0.00 6.30 16 12 N -0.71 -31.33 4.76 -300.06 -1.43 -32.76 16 13 C -0.21 -10.96 8.39 84.03 0.70 -10.26 16 14 H 0.06 3.29 7.23 -2.91 -0.02 3.26 16 15 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 16 N -0.96 -55.34 13.06 21.65 0.28 -55.05 16 17 Si 0.94 46.56 29.55 68.60 2.03 48.59 16 18 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 C -0.13 -4.29 5.94 31.67 0.19 -4.10 16 22 C -0.11 -3.06 6.91 31.89 0.22 -2.84 16 23 C -0.11 -2.56 6.83 31.67 0.22 -2.35 16 24 C -0.12 -3.31 5.80 31.32 0.18 -3.13 16 25 C 0.18 5.36 10.69 85.18 0.91 6.27 16 26 N -0.49 -14.70 10.36 -191.76 -1.99 -16.69 16 27 C 0.24 6.84 8.45 133.91 1.13 7.97 16 28 N -0.57 -10.51 6.20 -183.78 -1.14 -11.65 16 29 H 0.45 4.76 8.96 -92.70 -0.83 3.93 16 30 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.15 4.90 7.72 -2.91 -0.02 4.88 16 34 H 0.41 13.19 6.03 -92.71 -0.56 12.63 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.04 1.56 7.49 -2.38 -0.02 1.55 16 37 H 0.38 17.75 7.28 -92.71 -0.67 17.08 16 38 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 39 H 0.07 2.04 7.85 -2.39 -0.02 2.02 16 40 H 0.05 1.84 7.12 -2.39 -0.02 1.82 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.86 7.44 -2.39 -0.02 1.84 16 46 H 0.08 1.89 7.55 -2.39 -0.02 1.87 16 47 H 0.18 4.96 6.39 -2.91 -0.02 4.94 16 Total: -1.00 -74.21 384.91 -0.42 -74.63 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -1.02 Total: 37.71 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.30 Total: 22.73 kcal Atomic # 7 Polarization: -149.71 SS G_CDS: -8.66 Total: -158.36 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -74.21 -0.42 -74.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753664447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.740 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds