Wall clock time and date at job start Wed Apr 1 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47101 * 2 1 4 4 H 1.08995 * 109.49625 * 55.06784 * 3 2 1 5 5 C 1.53191 * 109.49840 * 295.00047 * 3 2 1 6 6 N 1.46924 * 108.77784 * 185.41156 * 5 3 2 7 7 C 1.34776 * 120.63225 * 233.58979 * 6 5 3 8 8 O 1.21688 * 120.00131 * 355.71869 * 7 6 5 9 9 C 1.46811 * 119.99895 * 175.71628 * 7 6 5 10 10 C 1.40417 * 126.53957 * 49.95139 * 9 7 6 11 11 N 1.30976 * 108.76496 * 179.97438 * 10 9 7 12 12 N 1.39712 * 109.48460 * 0.02562 * 11 10 9 13 13 C 1.36361 * 133.18622 * 179.97438 * 12 11 10 14 14 C 1.35302 * 119.80396 * 179.97438 * 13 12 11 15 15 N 1.33241 * 121.27310 * 359.97438 * 14 13 12 16 16 C 1.31413 * 121.08238 * 0.02562 * 15 14 13 17 17 C 1.36814 * 107.97181 * 359.72487 * 12 11 10 18 18 C 1.46925 * 118.73375 * 53.86189 * 6 5 3 19 19 C 1.53624 * 108.54650 * 306.09208 * 18 6 5 20 20 C 1.53035 * 109.49690 * 175.16350 * 3 2 1 21 21 H 1.09008 * 109.46094 * 61.29884 * 20 3 2 22 22 N 1.46505 * 109.46281 * 301.33935 * 20 3 2 23 23 C 1.36937 * 120.00236 * 155.00179 * 22 20 3 24 24 H 1.08005 * 120.00080 * 359.97438 * 23 22 20 25 25 C 1.38805 * 120.00057 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00344 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00064 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.46764 * 89.99889 * 27 25 23 29 29 H 1.48496 * 109.47379 * 209.99783 * 27 25 23 30 30 H 1.48492 * 109.47028 * 330.00495 * 27 25 23 31 31 H 1.09002 * 109.46872 * 299.99749 * 1 2 3 32 32 H 1.08997 * 109.47746 * 59.99656 * 1 2 3 33 33 H 1.08994 * 109.47373 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46872 * 240.00251 * 2 1 3 35 35 H 1.08997 * 109.47746 * 120.00344 * 2 1 3 36 36 H 1.09010 * 109.58238 * 65.62642 * 5 3 2 37 37 H 1.08994 * 109.70674 * 305.27173 * 5 3 2 38 38 H 1.08003 * 125.61777 * 359.97438 * 10 9 7 39 39 H 1.07996 * 120.10151 * 359.97319 * 13 12 11 40 40 H 1.07999 * 119.36093 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.18540 * 180.02562 * 16 15 14 42 42 H 1.08996 * 109.59123 * 65.92913 * 18 6 5 43 43 H 1.09003 * 109.58401 * 186.35527 * 18 6 5 44 44 H 1.09002 * 109.63654 * 294.86829 * 19 18 6 45 45 H 1.08998 * 109.46148 * 174.73688 * 19 18 6 46 46 H 0.96998 * 119.99545 * 335.00096 * 22 20 3 47 47 H 0.96993 * 120.00585 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6350 2.1281 -1.3088 6 7 2.2414 3.4657 -1.3493 7 6 1.4815 4.5580 -1.5637 8 8 0.2946 4.4361 -1.8032 9 6 2.0855 5.8949 -1.5081 10 6 3.2496 6.3146 -2.1719 11 7 3.4718 7.5716 -1.8787 12 7 2.4740 8.0324 -1.0161 13 6 2.2380 9.2362 -0.4207 14 6 1.1620 9.3883 0.3854 15 7 0.3202 8.3809 0.6127 16 6 0.5070 7.2029 0.0609 17 6 1.6060 7.0004 -0.7852 18 6 3.6928 3.5894 -1.1578 19 6 4.0740 2.8881 0.1548 20 6 3.5654 1.4450 0.1216 21 1 3.9988 0.9268 -0.7339 22 7 3.9578 0.7607 1.3562 23 6 5.1962 0.1849 1.4561 24 1 5.8836 0.2348 0.6246 25 6 5.5677 -0.4638 2.6257 26 7 6.7578 -1.0177 2.7216 27 14 4.3785 -0.5507 4.0637 28 1 3.5452 -1.7741 3.9435 29 1 5.1428 -0.5955 5.3361 30 1 3.5021 0.6480 4.0544 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.5495 2.2174 -1.3537 37 1 1.9887 1.5407 -2.1560 38 1 3.8609 5.7018 -2.8178 39 1 2.9078 10.0658 -0.5920 40 1 0.9821 10.3447 0.8537 41 1 -0.1847 6.3966 0.2549 42 1 4.2130 3.1179 -1.9916 43 1 3.9657 4.6433 -1.1032 44 1 3.6219 3.4139 0.9957 45 1 5.1584 2.8891 0.2655 46 1 3.3403 0.7156 2.1029 47 1 7.0172 -1.4713 3.5387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037857310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:03 Heat of formation + Delta-G solvation = 80.004418 kcal Electronic energy + Delta-G solvation = -30433.925211 eV Core-core repulsion = 26425.463392 eV Total energy + Delta-G solvation = -4008.461820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.63518 -41.21386 -39.47797 -38.97031 -36.26052 -35.39972 -34.68270 -33.59347 -32.50819 -31.50843 -30.98975 -29.68956 -26.91970 -25.92416 -25.41161 -24.71557 -24.22747 -23.15066 -22.14773 -21.34846 -20.58360 -19.57015 -19.22202 -18.54577 -17.89354 -17.39373 -17.07107 -16.76628 -16.51265 -16.07666 -16.00185 -15.92379 -15.33736 -15.17671 -14.69505 -14.63887 -14.54729 -14.45632 -14.11552 -14.06195 -13.89806 -13.82505 -13.26313 -13.10357 -12.90751 -12.67659 -12.53180 -12.39516 -12.19233 -12.10782 -11.92862 -11.82629 -11.60022 -11.51778 -11.13395 -11.09914 -11.04364 -10.97398 -10.83112 -9.68671 -9.26033 -8.96266 -7.98975 -5.30282 -0.70710 -0.29115 0.82490 1.02489 1.38163 1.39404 1.46371 1.69480 2.08016 2.33649 2.49758 2.91162 3.10416 3.20949 3.32775 3.53696 3.61000 3.70703 3.80585 3.96350 4.01341 4.04197 4.18225 4.23782 4.32245 4.33390 4.41894 4.46847 4.50553 4.64488 4.71126 4.81547 4.84071 4.90666 4.98532 5.00868 5.04813 5.08060 5.18698 5.30320 5.35285 5.37580 5.48543 5.51792 5.66505 5.82151 6.11303 6.25550 6.38099 6.47933 7.11511 7.11748 7.89052 8.06882 9.22690 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.003140 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.769033 B = 8914.196382 C = 9560.513349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.061 0.939 5 C 0.127 3.873 6 N -0.596 5.596 7 C 0.601 3.399 8 O -0.575 6.575 9 C -0.289 4.289 10 C 0.120 3.880 11 N -0.319 5.319 12 N -0.253 5.253 13 C 0.070 3.930 14 C 0.027 3.973 15 N -0.451 5.451 16 C 0.143 3.857 17 C 0.075 3.925 18 C 0.111 3.889 19 C -0.142 4.142 20 C 0.182 3.818 21 H 0.053 0.947 22 N -0.747 5.747 23 C -0.215 4.215 24 H 0.063 0.937 25 C -0.062 4.062 26 N -0.984 5.984 27 Si 0.944 3.056 28 H -0.279 1.279 29 H -0.301 1.301 30 H -0.258 1.258 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.233 0.767 39 H 0.220 0.780 40 H 0.228 0.772 41 H 0.185 0.815 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 20.458 -9.787 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.079 0.921 5 C 0.004 3.996 6 N -0.327 5.327 7 C 0.390 3.610 8 O -0.456 6.456 9 C -0.307 4.307 10 C -0.057 4.057 11 N -0.142 5.142 12 N -0.021 5.021 13 C -0.059 4.059 14 C -0.115 4.115 15 N -0.162 5.162 16 C -0.036 4.036 17 C -0.048 4.048 18 C -0.012 4.012 19 C -0.183 4.183 20 C 0.074 3.926 21 H 0.071 0.929 22 N -0.390 5.390 23 C -0.347 4.347 24 H 0.081 0.919 25 C -0.253 4.253 26 N -0.636 5.636 27 Si 0.773 3.227 28 H -0.206 1.206 29 H -0.228 1.228 30 H -0.183 1.183 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.249 0.751 39 H 0.237 0.763 40 H 0.244 0.756 41 H 0.202 0.798 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.194 0.806 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.662 21.613 -9.675 26.852 hybrid contribution 0.214 -1.347 0.939 1.656 sum -12.448 20.266 -8.736 25.337 Atomic orbital electron populations 1.21799 0.94653 1.02032 1.02030 1.21418 0.96267 0.94974 1.02312 1.21693 0.95198 0.96808 0.97953 0.92086 1.21695 0.99643 0.81286 0.96939 1.48013 1.08745 1.06295 1.69658 1.17116 0.85055 0.83174 0.75638 1.90767 1.16729 1.87084 1.50971 1.19632 1.02974 0.94731 1.13348 1.24638 0.93478 0.91686 0.95930 1.77663 1.09705 1.13966 1.12870 1.46454 1.16972 1.09310 1.29324 1.23469 1.00927 0.86990 0.94482 1.23179 0.89929 1.00556 0.97820 1.68239 1.28301 0.99837 1.19810 1.23094 0.93427 0.96213 0.90829 1.20427 0.94541 0.89552 1.00231 1.22109 0.78947 1.02292 0.97803 1.22517 1.01175 0.97556 0.97065 1.20415 0.92712 0.91001 0.88433 0.92876 1.42811 1.14985 1.66466 1.14692 1.19018 0.91516 1.25076 0.99043 0.91882 1.25350 0.98090 1.01231 1.00649 1.69856 1.21613 1.43759 1.28339 0.85568 0.78966 0.78579 0.79606 1.20560 1.22782 1.18325 0.93207 0.91620 0.92130 0.91421 0.93189 0.88872 0.89692 0.75135 0.76323 0.75586 0.79767 0.88743 0.88555 0.93476 0.91903 0.80567 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.67 71.98 0.70 -2.67 16 2 C -0.11 -3.10 5.31 30.59 0.16 -2.94 16 3 C -0.10 -2.74 1.93 -10.72 -0.02 -2.76 16 4 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.13 3.09 5.31 86.36 0.46 3.54 16 6 N -0.60 -14.42 2.97 -822.62 -2.44 -16.86 16 7 C 0.60 15.90 7.56 86.49 0.65 16.55 16 8 O -0.58 -18.44 16.54 -4.31 -0.07 -18.51 16 9 C -0.29 -6.73 5.17 -19.95 -0.10 -6.83 16 10 C 0.12 2.30 9.58 85.35 0.82 3.11 16 11 N -0.32 -6.62 12.60 -56.58 -0.71 -7.33 16 12 N -0.25 -4.96 3.91 -187.14 -0.73 -5.69 16 13 C 0.07 0.82 11.25 83.31 0.94 1.75 16 14 C 0.03 0.30 11.07 83.80 0.93 1.23 16 15 N -0.45 -8.20 10.44 -195.85 -2.05 -10.24 16 16 C 0.14 3.00 11.31 85.22 0.96 3.97 16 17 C 0.08 1.71 6.81 39.39 0.27 1.98 16 18 C 0.11 2.47 5.91 86.51 0.51 2.98 16 19 C -0.14 -4.34 5.68 30.82 0.17 -4.17 16 20 C 0.18 6.22 2.19 45.02 0.10 6.32 16 21 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 22 N -0.75 -32.80 4.14 -322.80 -1.34 -34.13 16 23 C -0.22 -11.66 10.41 84.03 0.87 -10.78 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 25 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 26 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 27 Si 0.94 45.23 27.74 68.60 1.90 47.14 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 30 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.34 6.70 -2.39 -0.02 1.32 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.66 7.22 -2.39 -0.02 1.64 16 36 H 0.09 2.34 5.75 -2.38 -0.01 2.33 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.23 2.77 7.59 -2.91 -0.02 2.75 16 39 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.23 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 1.89 4.53 -2.39 -0.01 1.88 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.36 15.80 5.37 -92.71 -0.50 15.30 16 47 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -76.04 378.59 3.20 -72.84 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.45 Total: 26.38 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 7.89 Total: 8.19 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -6.96 Total: -136.03 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.07 Total: -18.51 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.14 kcal Total: -76.04 3.20 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037857310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.843 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds