Wall clock time and date at job start Wed Apr 1 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52227 * 2 1 4 4 C 1.53194 * 109.48821 * 120.08433 * 2 1 3 5 5 N 1.46920 * 108.76542 * 174.60290 * 4 2 1 6 6 C 1.36936 * 120.63096 * 126.41027 * 5 4 2 7 7 H 1.07998 * 120.00029 * 332.77544 * 6 5 4 8 8 C 1.38813 * 120.00037 * 152.77980 * 6 5 4 9 9 N 1.31627 * 120.00032 * 159.75629 * 8 6 5 10 10 Si 1.86801 * 120.00031 * 339.75105 * 8 6 5 11 11 H 1.48497 * 109.47219 * 94.89717 * 10 8 6 12 12 H 1.48506 * 109.47130 * 214.89614 * 10 8 6 13 13 H 1.48504 * 109.47055 * 334.89417 * 10 8 6 14 14 C 1.46930 * 118.73875 * 306.38814 * 5 4 2 15 15 C 1.53184 * 108.77722 * 53.60968 * 14 5 4 16 16 C 1.53033 * 109.49991 * 239.92339 * 2 1 3 17 17 H 1.08999 * 109.46052 * 298.68350 * 16 2 1 18 18 N 1.46502 * 109.46170 * 58.66205 * 16 2 1 19 19 C 1.34776 * 119.99819 * 205.02724 * 18 16 2 20 20 O 1.21286 * 120.00375 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00036 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47058 * 180.02562 * 21 19 18 23 23 N 1.39833 * 125.39392 * 90.02800 * 22 21 19 24 24 C 1.30235 * 110.10037 * 179.97438 * 23 22 21 25 25 C 1.45861 * 107.64972 * 359.97438 * 24 23 22 26 26 C 1.39996 * 134.25716 * 180.29108 * 25 24 23 27 27 C 1.37012 * 118.15831 * 180.08908 * 26 25 24 28 28 C 1.38803 * 119.64530 * 359.60795 * 27 26 25 29 29 N 1.31506 * 121.59063 * 0.18593 * 28 27 26 30 30 C 1.32764 * 121.46921 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47794 * 300.07888 * 1 2 3 33 33 H 1.09001 * 109.47290 * 60.07945 * 1 2 3 34 34 H 1.09002 * 109.59463 * 54.81660 * 4 2 1 35 35 H 1.08995 * 109.70317 * 294.45956 * 4 2 1 36 36 H 0.96998 * 119.99635 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.58652 * 293.81715 * 14 5 4 38 38 H 1.09006 * 109.58660 * 173.39809 * 14 5 4 39 39 H 1.09002 * 109.50147 * 185.41097 * 15 14 5 40 40 H 1.09003 * 109.50012 * 65.31734 * 15 14 5 41 41 H 0.96995 * 120.00501 * 25.02330 * 18 16 2 42 42 H 1.08992 * 109.47278 * 60.00096 * 21 19 18 43 43 H 1.09003 * 109.46899 * 300.00058 * 21 19 18 44 44 H 1.07994 * 126.17777 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.91963 * 359.97438 * 26 25 24 46 46 H 1.08006 * 120.17726 * 179.83317 * 27 26 25 47 47 H 1.08000 * 119.20526 * 180.20288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0410 -0.7239 1.2496 5 7 3.5043 -0.8289 1.1698 6 6 4.2930 -0.3790 2.1948 7 1 3.9428 0.4155 2.8370 8 6 5.5428 -0.9441 2.4084 9 7 6.4525 -0.2884 3.0976 10 14 5.9335 -2.6353 1.7179 11 1 6.6136 -2.4893 0.4060 12 1 6.8242 -3.3606 2.6592 13 1 4.6733 -3.4005 1.5398 14 6 4.1053 -1.4262 -0.0306 15 6 3.5709 -0.6945 -1.2658 16 6 2.0408 -0.7229 -1.2483 17 1 1.6970 -1.7572 -1.2352 18 7 1.5265 -0.0528 -2.4453 19 6 1.3980 -0.7382 -3.5986 20 8 1.7086 -1.9097 -3.6457 21 6 0.8685 -0.0490 -4.8297 22 7 0.8245 -1.0016 -5.9418 23 7 -0.2620 -1.8207 -6.2641 24 6 0.0202 -2.5491 -7.3062 25 6 1.3761 -2.2134 -7.7263 26 6 2.2138 -2.6468 -8.7608 27 6 3.4649 -2.0959 -8.8535 28 6 3.8595 -1.1306 -7.9375 29 7 3.0611 -0.7291 -6.9727 30 6 1.8397 -1.2297 -6.8304 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5150 0.8892 33 1 -0.3634 0.5126 -0.8907 34 1 1.6052 -1.7218 1.2979 35 1 1.7631 -0.1604 2.1402 36 1 7.3257 -0.6835 3.2471 37 1 3.8378 -2.4813 -0.0867 38 1 5.1896 -1.3239 0.0141 39 1 3.9337 -1.1890 -2.1669 40 1 3.9157 0.3394 -1.2537 41 1 1.2784 0.8842 -2.4078 42 1 1.5222 0.7835 -5.0896 43 1 -0.1360 0.3256 -4.6327 44 1 -0.6322 -3.2707 -7.7752 45 1 1.8838 -3.3961 -9.4652 46 1 4.1390 -2.4083 -9.6374 47 1 4.8460 -0.6987 -8.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942517841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:27 Heat of formation + Delta-G solvation = 98.436930 kcal Electronic energy + Delta-G solvation = -29964.704357 eV Core-core repulsion = 25957.041831 eV Total energy + Delta-G solvation = -4007.662526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.81422 -39.96091 -38.40660 -37.80973 -34.76631 -34.06238 -32.79571 -32.04224 -31.60112 -30.43080 -30.20143 -27.72730 -26.38544 -24.86958 -24.22911 -22.99867 -22.33354 -21.57323 -21.24042 -20.39184 -19.60661 -17.99709 -17.44371 -17.34796 -16.73644 -16.43740 -16.10140 -15.41221 -15.22984 -14.99377 -14.61258 -14.36175 -14.19257 -13.89632 -13.63778 -13.49240 -13.45091 -13.16083 -12.90464 -12.78493 -12.73856 -12.46143 -12.08804 -11.94775 -11.66629 -11.57629 -11.26506 -11.04164 -10.98033 -10.62560 -10.56439 -10.16935 -10.06052 -10.00695 -9.75963 -9.71619 -9.48826 -9.24376 -8.86290 -8.62477 -8.54060 -6.99881 -5.95201 -3.31526 0.51773 1.03796 1.76328 2.20147 2.55787 3.16447 3.35334 3.50616 3.54320 3.55174 3.90304 4.00639 4.36078 4.51019 4.53853 4.59051 4.69835 4.79117 4.87279 4.90624 4.98796 5.07551 5.24855 5.26144 5.31064 5.34991 5.42704 5.69520 5.82761 5.82983 5.86596 5.95511 6.00738 6.07438 6.10338 6.22127 6.24099 6.34557 6.40782 6.50286 6.57876 6.62989 6.68882 6.71401 6.91527 7.17564 7.49669 7.67188 7.94643 8.19437 8.31856 8.92594 9.71525 10.08674 11.20577 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002797 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.659585 B =10008.074613 C =11213.517416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.077 0.923 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.261 4.261 7 H 0.087 0.913 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.130 3.870 15 C -0.141 4.141 16 C 0.159 3.841 17 H 0.082 0.918 18 N -0.718 5.718 19 C 0.496 3.504 20 O -0.525 6.525 21 C 0.124 3.876 22 N -0.376 5.376 23 N -0.228 5.228 24 C 0.084 3.916 25 C -0.229 4.229 26 C 0.005 3.995 27 C -0.219 4.219 28 C 0.170 3.830 29 N -0.500 5.500 30 C 0.325 3.675 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.202 0.798 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.118 0.341 -25.037 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.095 0.905 4 C 0.031 3.969 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.711 3.289 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.194 1.194 14 C 0.003 3.997 15 C -0.181 4.181 16 C 0.055 3.945 17 H 0.100 0.900 18 N -0.369 5.369 19 C 0.279 3.721 20 O -0.400 6.400 21 C -0.002 4.002 22 N -0.165 5.165 23 N -0.039 5.039 24 C -0.115 4.115 25 C -0.239 4.239 26 C -0.023 4.023 27 C -0.241 4.241 28 C 0.001 3.999 29 N -0.215 5.215 30 C 0.086 3.914 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.218 0.782 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.417 0.534 -23.281 26.876 hybrid contribution 0.698 -1.300 -1.407 2.039 sum -12.719 -0.766 -24.688 27.783 Atomic orbital electron populations 1.21765 0.95399 1.01674 1.01131 1.21966 0.94859 1.00915 0.95894 0.90466 1.20918 0.84383 0.97044 0.94555 1.44399 1.00753 1.71847 1.15947 1.18911 0.97765 1.14169 1.08033 0.89583 1.25260 0.96438 0.98038 0.97730 1.69833 1.04543 1.37172 1.43589 0.86978 0.77892 0.86915 0.77097 1.21670 1.23091 1.19409 1.21305 0.98072 0.94750 0.85525 1.22397 0.94432 1.02002 0.99300 1.21023 0.93983 0.97057 0.82404 0.89987 1.46153 1.66169 1.14361 1.10227 1.20752 0.78862 0.87770 0.84714 1.90757 1.48883 1.16043 1.84282 1.21459 1.05138 0.90011 0.83593 1.47532 1.08885 1.35516 1.24577 1.76719 1.08017 1.04398 1.14752 1.25034 0.93940 0.98818 0.93719 1.20500 0.97304 1.04213 1.01863 1.20766 0.91988 0.95656 0.93906 1.21653 0.97762 1.01526 1.03164 1.22764 0.97657 0.91954 0.87521 1.66751 1.01896 1.29507 1.23312 1.18930 0.89082 0.93190 0.90151 0.92895 0.92423 0.93306 0.95748 0.91320 0.92757 0.95488 0.90809 0.92439 0.91509 0.76834 0.85799 0.85963 0.78176 0.84278 0.84130 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.03 37.15 0.34 -1.39 16 2 C -0.12 -1.78 2.46 -90.51 -0.22 -2.00 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.16 3.04 5.80 -3.71 -0.02 3.02 16 5 N -0.61 -14.45 2.77 -172.33 -0.48 -14.93 16 6 C -0.26 -7.28 10.04 -15.06 -0.15 -7.43 16 7 H 0.09 2.54 8.05 -52.49 -0.42 2.11 16 8 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 9 N -0.91 -28.04 13.97 55.49 0.78 -27.26 16 10 Si 0.88 23.02 24.35 -169.99 -4.14 18.88 16 11 H -0.29 -7.39 6.70 56.52 0.38 -7.02 16 12 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.27 -6.96 6.45 56.52 0.36 -6.59 16 14 C 0.13 2.96 4.19 -3.71 -0.02 2.95 16 15 C -0.14 -2.70 5.65 -26.61 -0.15 -2.85 16 16 C 0.16 2.59 1.88 -67.89 -0.13 2.47 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.72 -9.24 4.36 -53.76 -0.23 -9.47 16 19 C 0.50 7.15 7.86 -10.99 -0.09 7.06 16 20 O -0.52 -10.18 16.09 5.55 0.09 -10.09 16 21 C 0.12 1.35 6.89 -5.19 -0.04 1.31 16 22 N -0.38 -4.99 3.13 -61.60 -0.19 -5.19 16 23 N -0.23 -2.90 12.40 31.85 0.39 -2.50 16 24 C 0.08 0.84 12.29 -15.18 -0.19 0.65 16 25 C -0.23 -2.54 6.38 -105.18 -0.67 -3.21 16 26 C 0.01 0.04 10.18 -39.37 -0.40 -0.36 16 27 C -0.22 -1.66 10.04 -39.82 -0.40 -2.06 16 28 C 0.17 1.62 11.15 -17.48 -0.19 1.43 16 29 N -0.50 -6.55 10.40 -12.34 -0.13 -6.68 16 30 C 0.32 4.40 7.97 -156.11 -1.24 3.15 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.03 0.63 6.98 -51.93 -0.36 0.27 16 38 H 0.07 1.84 4.50 -51.93 -0.23 1.61 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.40 3.77 8.31 -40.82 -0.34 3.43 16 42 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -38.00 381.15 -8.65 -46.65 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.81 Total: 1.49 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.66 Total: 3.37 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 0.14 Total: -66.04 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.14 Total: 18.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.00 -8.65 -46.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942517841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.083 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds