Wall clock time and date at job start Wed Apr 1 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52227 * 2 1 4 4 C 1.53194 * 109.48821 * 120.08433 * 2 1 3 5 5 N 1.46920 * 108.76542 * 174.60290 * 4 2 1 6 6 C 1.36936 * 120.63096 * 126.41027 * 5 4 2 7 7 H 1.07998 * 120.00029 * 332.77544 * 6 5 4 8 8 C 1.38813 * 120.00037 * 152.77980 * 6 5 4 9 9 N 1.31627 * 120.00032 * 159.75629 * 8 6 5 10 10 Si 1.86801 * 120.00031 * 339.75105 * 8 6 5 11 11 H 1.48497 * 109.47219 * 94.89717 * 10 8 6 12 12 H 1.48506 * 109.47130 * 214.89614 * 10 8 6 13 13 H 1.48504 * 109.47055 * 334.89417 * 10 8 6 14 14 C 1.46930 * 118.73875 * 306.38814 * 5 4 2 15 15 C 1.53184 * 108.77722 * 53.60968 * 14 5 4 16 16 C 1.53033 * 109.49991 * 239.92339 * 2 1 3 17 17 H 1.08999 * 109.46052 * 298.68350 * 16 2 1 18 18 N 1.46502 * 109.46170 * 58.66205 * 16 2 1 19 19 C 1.34776 * 119.99819 * 205.02724 * 18 16 2 20 20 O 1.21286 * 120.00375 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00036 * 179.97438 * 19 18 16 22 22 N 1.46499 * 109.47058 * 180.02562 * 21 19 18 23 23 N 1.39833 * 125.39392 * 90.02800 * 22 21 19 24 24 C 1.30235 * 110.10037 * 179.97438 * 23 22 21 25 25 C 1.45861 * 107.64972 * 359.97438 * 24 23 22 26 26 C 1.39996 * 134.25716 * 180.29108 * 25 24 23 27 27 C 1.37012 * 118.15831 * 180.08908 * 26 25 24 28 28 C 1.38803 * 119.64530 * 359.60795 * 27 26 25 29 29 N 1.31506 * 121.59063 * 0.18593 * 28 27 26 30 30 C 1.32764 * 121.46921 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47794 * 300.07888 * 1 2 3 33 33 H 1.09001 * 109.47290 * 60.07945 * 1 2 3 34 34 H 1.09002 * 109.59463 * 54.81660 * 4 2 1 35 35 H 1.08995 * 109.70317 * 294.45956 * 4 2 1 36 36 H 0.96998 * 119.99635 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.58652 * 293.81715 * 14 5 4 38 38 H 1.09006 * 109.58660 * 173.39809 * 14 5 4 39 39 H 1.09002 * 109.50147 * 185.41097 * 15 14 5 40 40 H 1.09003 * 109.50012 * 65.31734 * 15 14 5 41 41 H 0.96995 * 120.00501 * 25.02330 * 18 16 2 42 42 H 1.08992 * 109.47278 * 60.00096 * 21 19 18 43 43 H 1.09003 * 109.46899 * 300.00058 * 21 19 18 44 44 H 1.07994 * 126.17777 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.91963 * 359.97438 * 26 25 24 46 46 H 1.08006 * 120.17726 * 179.83317 * 27 26 25 47 47 H 1.08000 * 119.20526 * 180.20288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0410 -0.7239 1.2496 5 7 3.5043 -0.8289 1.1698 6 6 4.2930 -0.3790 2.1948 7 1 3.9428 0.4155 2.8370 8 6 5.5428 -0.9441 2.4084 9 7 6.4525 -0.2884 3.0976 10 14 5.9335 -2.6353 1.7179 11 1 6.6136 -2.4893 0.4060 12 1 6.8242 -3.3606 2.6592 13 1 4.6733 -3.4005 1.5398 14 6 4.1053 -1.4262 -0.0306 15 6 3.5709 -0.6945 -1.2658 16 6 2.0408 -0.7229 -1.2483 17 1 1.6970 -1.7572 -1.2352 18 7 1.5265 -0.0528 -2.4453 19 6 1.3980 -0.7382 -3.5986 20 8 1.7086 -1.9097 -3.6457 21 6 0.8685 -0.0490 -4.8297 22 7 0.8245 -1.0016 -5.9418 23 7 -0.2620 -1.8207 -6.2641 24 6 0.0202 -2.5491 -7.3062 25 6 1.3761 -2.2134 -7.7263 26 6 2.2138 -2.6468 -8.7608 27 6 3.4649 -2.0959 -8.8535 28 6 3.8595 -1.1306 -7.9375 29 7 3.0611 -0.7291 -6.9727 30 6 1.8397 -1.2297 -6.8304 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5150 0.8892 33 1 -0.3634 0.5126 -0.8907 34 1 1.6052 -1.7218 1.2979 35 1 1.7631 -0.1604 2.1402 36 1 7.3257 -0.6835 3.2471 37 1 3.8378 -2.4813 -0.0867 38 1 5.1896 -1.3239 0.0141 39 1 3.9337 -1.1890 -2.1669 40 1 3.9157 0.3394 -1.2537 41 1 1.2784 0.8842 -2.4078 42 1 1.5222 0.7835 -5.0896 43 1 -0.1360 0.3256 -4.6327 44 1 -0.6322 -3.2707 -7.7752 45 1 1.8838 -3.3961 -9.4652 46 1 4.1390 -2.4083 -9.6374 47 1 4.8460 -0.6987 -8.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942517841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:26 Heat of formation + Delta-G solvation = 71.178391 kcal Electronic energy + Delta-G solvation = -29965.886376 eV Core-core repulsion = 25957.041831 eV Total energy + Delta-G solvation = -4008.844545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56312 -41.19029 -39.52755 -38.91169 -36.37005 -34.88016 -34.29690 -33.42142 -32.86716 -31.87960 -31.07553 -28.69810 -27.85723 -26.53121 -24.93167 -24.04579 -23.57965 -23.13262 -22.32127 -21.55375 -20.92347 -18.97999 -18.70489 -18.38573 -18.13971 -17.57132 -17.07857 -16.75927 -16.38254 -16.21205 -16.16020 -15.42000 -15.29744 -15.11722 -15.03956 -14.80506 -14.67016 -14.35638 -14.13287 -13.95169 -13.67186 -13.54713 -13.50379 -13.36389 -13.20886 -12.87434 -12.73426 -12.26955 -12.16434 -12.02463 -11.98833 -11.79879 -11.76524 -11.53331 -11.40626 -11.06178 -10.78558 -10.45510 -10.13389 -10.03129 -9.31304 -9.01528 -8.21575 -5.53039 -0.17313 0.34768 1.01158 1.23836 1.34456 1.42525 1.45131 1.47915 2.10369 2.35511 2.83342 2.98550 3.21794 3.26520 3.30746 3.56658 3.67941 3.71950 3.84029 3.89027 4.04568 4.06957 4.10197 4.15298 4.22662 4.33657 4.47231 4.52106 4.56405 4.64415 4.67386 4.76014 4.81199 4.83792 4.84868 5.01781 5.07389 5.11964 5.22343 5.27567 5.32974 5.39544 5.48953 5.58432 5.80762 5.81670 6.08803 6.41364 6.45589 6.84605 6.93725 7.13601 7.55856 7.97629 8.98006 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002797 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.659585 B =10008.074613 C =11213.517416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.150 3.850 5 N -0.618 5.618 6 C -0.244 4.244 7 H 0.064 0.936 8 C -0.029 4.029 9 N -0.952 5.952 10 Si 0.935 3.065 11 H -0.284 1.284 12 H -0.306 1.306 13 H -0.267 1.267 14 C 0.128 3.872 15 C -0.129 4.129 16 C 0.170 3.830 17 H 0.061 0.939 18 N -0.701 5.701 19 C 0.496 3.504 20 O -0.578 6.578 21 C 0.127 3.873 22 N -0.392 5.392 23 N -0.264 5.264 24 C 0.094 3.906 25 C -0.249 4.249 26 C 0.008 3.992 27 C -0.214 4.214 28 C 0.156 3.844 29 N -0.539 5.539 30 C 0.290 3.710 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.262 0.738 37 H 0.021 0.979 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.418 0.582 42 H 0.141 0.859 43 H 0.155 0.845 44 H 0.242 0.758 45 H 0.178 0.822 46 H 0.178 0.822 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 0.144 -28.082 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.342 5.342 6 C -0.373 4.373 7 H 0.082 0.918 8 C -0.224 4.224 9 N -0.598 5.598 10 Si 0.765 3.235 11 H -0.212 1.212 12 H -0.235 1.235 13 H -0.191 1.191 14 C 0.002 3.998 15 C -0.170 4.170 16 C 0.065 3.935 17 H 0.079 0.921 18 N -0.353 5.353 19 C 0.282 3.718 20 O -0.457 6.457 21 C 0.002 3.998 22 N -0.183 5.183 23 N -0.075 5.075 24 C -0.104 4.104 25 C -0.259 4.259 26 C -0.020 4.020 27 C -0.235 4.235 28 C -0.011 4.011 29 N -0.255 5.255 30 C 0.052 3.948 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.256 0.744 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.258 0.742 45 H 0.196 0.804 46 H 0.195 0.805 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.312 0.371 -26.365 30.491 hybrid contribution 1.277 -1.239 -0.555 1.864 sum -14.035 -0.867 -26.920 30.371 Atomic orbital electron populations 1.21715 0.92277 1.02043 1.03144 1.21772 0.97239 1.00057 0.93107 0.89997 1.21168 0.81616 0.97862 0.96878 1.44523 1.02499 1.71855 1.15345 1.18918 0.97767 1.12740 1.07884 0.91793 1.25784 0.96807 1.00759 0.99056 1.69932 1.05103 1.38576 1.46235 0.86090 0.77580 0.83332 0.76507 1.21165 1.23478 1.19147 1.21229 0.96827 0.94896 0.86831 1.22219 0.96660 1.01215 0.96880 1.20660 0.91916 0.96627 0.84319 0.92113 1.45863 1.65352 1.15196 1.08920 1.21439 0.77613 0.87150 0.85635 1.90730 1.51229 1.18581 1.85153 1.21589 1.07004 0.89625 0.81549 1.47707 1.09171 1.36292 1.25080 1.76651 1.08672 1.05773 1.16375 1.25773 0.93987 0.98124 0.92557 1.20922 0.98158 1.04218 1.02605 1.21294 0.91575 0.95716 0.93373 1.22085 0.98159 1.00155 1.03091 1.23380 0.98222 0.92371 0.87169 1.66735 1.02474 1.31119 1.25181 1.19367 0.89591 0.94570 0.91286 0.93358 0.91087 0.90686 0.95395 0.91097 0.92898 0.96092 0.93224 0.93202 0.91309 0.74394 0.84138 0.82783 0.74204 0.80430 0.80467 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.03 71.98 0.65 -2.20 16 2 C -0.10 -2.92 2.46 -10.72 -0.03 -2.95 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 4 C 0.15 5.66 5.80 86.36 0.50 6.16 16 5 N -0.62 -29.56 2.77 -699.12 -1.94 -31.50 16 6 C -0.24 -13.84 10.04 84.03 0.84 -13.00 16 7 H 0.06 3.87 8.05 -2.91 -0.02 3.85 16 8 C -0.03 -1.72 5.24 84.86 0.44 -1.28 16 9 N -0.95 -60.39 13.97 21.65 0.30 -60.09 16 10 Si 0.93 48.80 24.35 68.60 1.67 50.47 16 11 H -0.28 -14.45 6.70 99.48 0.67 -13.78 16 12 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 13 H -0.27 -13.62 6.45 99.48 0.64 -12.98 16 14 C 0.13 5.90 4.19 86.36 0.36 6.26 16 15 C -0.13 -4.93 5.65 30.67 0.17 -4.76 16 16 C 0.17 5.36 1.88 45.02 0.08 5.45 16 17 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 18 N -0.70 -16.77 4.36 -442.40 -1.93 -18.70 16 19 C 0.50 13.85 7.86 87.66 0.69 14.54 16 20 O -0.58 -22.62 16.09 -3.05 -0.05 -22.67 16 21 C 0.13 2.61 6.89 85.63 0.59 3.20 16 22 N -0.39 -10.19 3.13 -348.82 -1.09 -11.28 16 23 N -0.26 -6.46 12.40 -53.15 -0.66 -7.12 16 24 C 0.09 1.72 12.29 86.90 1.07 2.79 16 25 C -0.25 -5.14 6.38 -20.23 -0.13 -5.27 16 26 C 0.01 0.11 10.18 22.41 0.23 0.34 16 27 C -0.21 -2.62 10.04 22.12 0.22 -2.39 16 28 C 0.16 2.76 11.15 84.88 0.95 3.70 16 29 N -0.54 -13.94 10.40 -192.96 -2.01 -15.95 16 30 C 0.29 7.70 7.97 134.12 1.07 8.77 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.23 7.36 -2.39 -0.02 1.22 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 36 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.02 1.00 6.98 -2.39 -0.02 0.98 16 38 H 0.05 2.52 4.50 -2.38 -0.01 2.51 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.42 6.66 8.31 -92.71 -0.77 5.89 16 42 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.24 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 47 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -87.26 381.15 2.13 -85.13 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.12 Total: 12.35 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 7.72 Total: 19.36 kcal Atomic # 7 Polarization: -137.31 SS G_CDS: -7.32 Total: -144.64 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.67 Total: 50.47 kcal Total: -87.26 2.13 -85.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942517841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.305 kcal (2) G-P(sol) polarization free energy of solvation -87.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds