Wall clock time and date at job start Wed Apr 1 2020 02:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52114 * 2 1 4 4 C 1.53194 * 109.49678 * 239.92112 * 2 1 3 5 5 N 1.46926 * 108.77621 * 185.41331 * 4 2 1 6 6 C 1.36929 * 120.63078 * 233.58671 * 5 4 2 7 7 H 1.08005 * 120.00255 * 152.60165 * 6 5 4 8 8 C 1.38813 * 120.00182 * 332.59567 * 6 5 4 9 9 N 1.31619 * 120.00090 * 159.31287 * 8 6 5 10 10 Si 1.86794 * 119.99846 * 339.31703 * 8 6 5 11 11 H 1.48501 * 109.47518 * 92.94936 * 10 8 6 12 12 H 1.48506 * 109.47118 * 212.94706 * 10 8 6 13 13 H 1.48497 * 109.47339 * 332.94500 * 10 8 6 14 14 C 1.46928 * 118.73731 * 53.60532 * 5 4 2 15 15 C 1.53191 * 108.77619 * 306.39328 * 14 5 4 16 16 C 1.53037 * 109.49763 * 120.08484 * 2 1 3 17 17 H 1.09003 * 109.45430 * 301.33241 * 16 2 1 18 18 N 1.46498 * 109.46426 * 61.30636 * 16 2 1 19 19 C 1.34772 * 120.00427 * 205.02736 * 18 16 2 20 20 O 1.21581 * 119.99514 * 0.02562 * 19 18 16 21 21 C 1.47687 * 120.00493 * 179.97438 * 19 18 16 22 22 C 1.40181 * 120.40460 * 359.72358 * 21 19 18 23 23 N 1.31192 * 121.37092 * 179.72211 * 22 21 19 24 24 C 1.32927 * 121.84409 * 0.58821 * 23 22 21 25 25 C 1.41065 * 120.20320 * 359.67844 * 24 23 22 26 26 C 1.45975 * 106.43391 * 180.02562 * 25 24 23 27 27 N 1.30197 * 107.58520 * 0.02562 * 26 25 24 28 28 N 1.36635 * 133.26739 * 179.71045 * 24 23 22 29 29 C 1.46499 * 125.34026 * 359.95200 * 28 24 23 30 30 C 1.39502 * 120.41037 * 180.02562 * 21 19 18 31 31 H 1.09003 * 109.46935 * 299.92082 * 1 2 3 32 32 H 1.09002 * 109.47267 * 59.91557 * 1 2 3 33 33 H 1.08995 * 109.47147 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.58368 * 305.19928 * 4 2 1 35 35 H 1.09002 * 109.58921 * 65.62538 * 4 2 1 36 36 H 0.97005 * 119.99892 * 180.02562 * 9 8 6 37 37 H 1.09010 * 109.58328 * 66.18398 * 14 5 4 38 38 H 1.09000 * 109.58430 * 186.60107 * 14 5 4 39 39 H 1.09001 * 109.49858 * 294.68323 * 15 14 5 40 40 H 1.09006 * 109.49452 * 174.58441 * 15 14 5 41 41 H 0.96999 * 119.99846 * 25.03023 * 18 16 2 42 42 H 1.07998 * 119.31578 * 0.02562 * 22 21 19 43 43 H 1.07996 * 126.20460 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.46769 * 90.00143 * 29 28 24 45 45 H 1.08991 * 109.47144 * 210.00073 * 29 28 24 46 46 H 1.08996 * 109.47550 * 330.00614 * 29 28 24 47 47 H 1.08000 * 121.02538 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1697 6 6 4.2935 -0.3793 -2.1945 7 1 5.3004 -0.0440 -1.9938 8 6 3.7992 -0.3542 -3.4914 9 7 4.3571 0.4252 -4.3934 10 14 2.3422 -1.4267 -3.9564 11 1 1.0856 -0.6521 -3.7943 12 1 2.4777 -1.8597 -5.3705 13 1 2.3050 -2.6208 -3.0745 14 6 4.1053 -1.4267 0.0307 15 6 3.5708 -0.6950 1.2659 16 6 2.0408 -0.7232 1.2483 17 1 1.6582 -0.2245 2.1388 18 7 1.5786 -2.1132 1.2306 19 6 1.4499 -2.7954 2.3858 20 8 1.7171 -2.2570 3.4426 21 6 0.9834 -4.1965 2.3680 22 6 0.6665 -4.8235 1.1549 23 7 0.2556 -6.0688 1.1166 24 6 0.1083 -6.7930 2.2215 25 6 0.4018 -6.2320 3.4821 26 6 0.1392 -7.2747 4.4694 27 7 -0.2660 -8.3319 3.8267 28 7 -0.2986 -8.0767 2.4525 29 6 -0.7050 -9.0353 1.4219 30 6 0.8467 -4.9104 3.5587 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5151 -0.8892 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6052 -1.7216 -1.2980 35 1 1.7638 -0.1579 -2.1390 36 1 4.0114 0.4430 -5.2996 37 1 3.8375 -2.4819 0.0866 38 1 5.1896 -1.3246 -0.0139 39 1 3.9159 0.3389 1.2540 40 1 3.9334 -1.1898 2.1670 41 1 1.3651 -2.5426 0.3874 42 1 0.7674 -4.2714 0.2322 43 1 0.2601 -7.1855 5.5389 44 1 0.1663 -9.5960 1.0835 45 1 -1.4416 -9.7236 1.8362 46 1 -1.1418 -8.4995 0.5793 47 1 1.0783 -4.4553 4.5104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943771162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:07 Heat of formation + Delta-G solvation = 97.820512 kcal Electronic energy + Delta-G solvation = -30367.289674 eV Core-core repulsion = 26359.600418 eV Total energy + Delta-G solvation = -4007.689256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94908 -40.21592 -38.51383 -37.56851 -34.48281 -34.17050 -32.63795 -32.08273 -31.86573 -30.86622 -29.86959 -27.29382 -26.25438 -25.39361 -24.27415 -24.01638 -22.53389 -21.29770 -21.08398 -20.84870 -18.99521 -18.26440 -18.04011 -17.05326 -16.59995 -16.23313 -16.00547 -15.49837 -15.10272 -14.91138 -14.55500 -14.32623 -14.09306 -13.87435 -13.72149 -13.64464 -13.45926 -13.32640 -13.24891 -12.89453 -12.76967 -12.60837 -12.24976 -11.97330 -11.56855 -11.51463 -11.38644 -11.21861 -10.82377 -10.71938 -10.55532 -10.29879 -10.23470 -10.07262 -9.73318 -9.63857 -9.50764 -9.43680 -8.90067 -8.65062 -8.60698 -7.02013 -5.98739 -3.34833 0.40211 0.53346 1.73239 2.03837 2.77722 3.18332 3.25967 3.42335 3.45181 3.60785 3.72542 3.88593 4.19758 4.47513 4.48291 4.53267 4.74168 4.86496 4.87924 4.91059 5.01063 5.03669 5.12853 5.21522 5.26798 5.30297 5.43095 5.63613 5.70240 5.80127 5.83545 5.87609 5.94338 6.01027 6.04398 6.14080 6.24859 6.35385 6.36431 6.38168 6.56858 6.61710 6.64691 6.70326 6.90379 6.99748 7.47942 7.59077 7.91879 8.24800 8.29509 8.89706 9.67620 10.04634 11.17280 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003139 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.261237 B = 8917.002604 C = 9994.547473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.090 0.910 4 C 0.132 3.868 5 N -0.604 5.604 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.907 5.907 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.150 3.850 15 C -0.147 4.147 16 C 0.161 3.839 17 H 0.082 0.918 18 N -0.710 5.710 19 C 0.570 3.430 20 O -0.543 6.543 21 C -0.229 4.229 22 C 0.207 3.793 23 N -0.503 5.503 24 C 0.329 3.671 25 C -0.239 4.239 26 C 0.096 3.904 27 N -0.242 5.242 28 N -0.393 5.393 29 C 0.110 3.890 30 C 0.072 3.928 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.263 0.737 37 H 0.021 0.979 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.398 0.602 42 H 0.168 0.832 43 H 0.206 0.794 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -13.480 15.467 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 H 0.108 0.892 4 C 0.006 3.994 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.711 3.289 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.024 3.976 15 C -0.187 4.187 16 C 0.057 3.943 17 H 0.100 0.900 18 N -0.361 5.361 19 C 0.357 3.643 20 O -0.422 6.422 21 C -0.236 4.236 22 C 0.036 3.964 23 N -0.217 5.217 24 C 0.089 3.911 25 C -0.250 4.250 26 C -0.103 4.103 27 N -0.053 5.053 28 N -0.183 5.183 29 C -0.031 4.031 30 C 0.044 3.956 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.235 0.765 42 H 0.185 0.815 43 H 0.222 0.778 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.803 -14.872 15.216 24.331 hybrid contribution -0.461 0.298 -0.342 0.646 sum -12.263 -14.574 14.873 24.166 Atomic orbital electron populations 1.21795 0.95522 1.01407 1.01581 1.21977 0.94911 1.01237 0.95888 0.89151 1.21366 0.85128 0.96605 0.96327 1.44363 1.00466 1.70167 1.17776 1.18923 0.98563 1.36173 0.85100 0.89651 1.25290 0.97975 0.98653 0.95674 1.69838 1.43218 1.37783 1.04161 0.86982 0.82638 0.82348 0.76902 1.21552 1.23157 1.19605 1.20895 0.97260 0.93943 0.85480 1.22387 0.94673 1.02245 0.99387 1.20948 0.94597 0.80191 0.98580 0.89990 1.46087 1.67061 1.14548 1.08442 1.17743 0.77546 0.84817 0.84240 1.90761 1.51240 1.69681 1.30473 1.20732 1.11291 0.96804 0.94822 1.22915 0.87962 0.88245 0.97286 1.66688 1.19149 1.07286 1.28616 1.19150 0.94171 0.87180 0.90574 1.20470 1.13419 0.96913 0.94153 1.25140 0.96785 0.88349 0.99989 1.76735 1.18713 1.23101 0.86762 1.48134 1.57393 1.08301 1.04482 1.21865 1.01289 0.91673 0.88261 1.21157 0.86035 0.89538 0.98903 0.92860 0.92440 0.93146 0.96372 0.90497 0.92753 0.96102 0.91883 0.90820 0.91987 0.76504 0.81533 0.77765 0.90871 0.89299 0.88971 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.05 37.16 0.34 -1.60 16 2 C -0.12 -1.90 2.67 -90.50 -0.24 -2.14 16 3 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.13 2.59 3.19 -3.71 -0.01 2.57 16 5 N -0.60 -13.39 2.77 -172.31 -0.48 -13.86 16 6 C -0.26 -6.96 10.03 -15.06 -0.15 -7.11 16 7 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 8 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 9 N -0.91 -27.17 13.97 55.49 0.78 -26.39 16 10 Si 0.88 21.33 24.35 -169.99 -4.14 17.19 16 11 H -0.29 -6.66 6.62 56.52 0.37 -6.29 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.27 -6.29 6.64 56.52 0.38 -5.92 16 14 C 0.15 2.82 6.26 -3.71 -0.02 2.80 16 15 C -0.15 -2.38 5.77 -26.61 -0.15 -2.53 16 16 C 0.16 2.41 2.21 -67.89 -0.15 2.26 16 17 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 18 N -0.71 -9.74 3.55 -54.76 -0.19 -9.93 16 19 C 0.57 7.89 7.74 -12.40 -0.10 7.79 16 20 O -0.54 -8.87 16.06 5.29 0.09 -8.79 16 21 C -0.23 -2.75 5.89 -104.84 -0.62 -3.37 16 22 C 0.21 2.43 10.69 -17.10 -0.18 2.24 16 23 N -0.50 -6.37 10.37 -12.03 -0.12 -6.49 16 24 C 0.33 4.00 7.96 -156.09 -1.24 2.76 16 25 C -0.24 -2.58 6.36 -105.20 -0.67 -3.25 16 26 C 0.10 0.82 12.30 -15.15 -0.19 0.64 16 27 N -0.24 -2.50 12.39 31.87 0.39 -2.10 16 28 N -0.39 -4.25 4.03 -67.18 -0.27 -4.53 16 29 C 0.11 0.81 11.43 59.85 0.68 1.49 16 30 C 0.07 0.78 9.76 -38.58 -0.38 0.40 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 34 H 0.02 0.34 5.57 -51.93 -0.29 0.06 16 35 H 0.08 1.70 4.50 -51.93 -0.23 1.47 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.02 0.38 7.74 -51.92 -0.40 -0.02 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.40 5.21 4.77 -40.82 -0.19 5.02 16 42 H 0.17 1.71 6.39 -52.49 -0.34 1.37 16 43 H 0.21 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.16 1.43 7.72 -52.49 -0.41 1.03 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -33.44 373.68 -7.96 -41.40 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.47 Total: 4.34 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.17 Total: 3.52 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.10 Total: -63.31 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.44 -7.96 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943771162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.222 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds