Wall clock time and date at job start Wed Apr 1 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21642 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.47111 * 120.00232 * 179.97438 * 5 4 2 8 8 C 1.36699 * 126.95570 * 0.02859 * 7 5 4 9 9 N 1.34643 * 108.66397 * 179.97438 * 8 7 5 10 10 H 0.97005 * 124.75040 * 180.02562 * 9 8 7 11 11 C 1.36449 * 110.49849 * 0.02562 * 9 8 7 12 12 C 1.35601 * 108.67589 * 359.70990 * 11 9 8 13 13 C 1.48520 * 126.96428 * 180.27131 * 12 11 9 14 14 C 1.40812 * 126.21435 * 130.22562 * 13 12 11 15 15 N 1.30704 * 108.12790 * 179.97438 * 14 13 12 16 16 N 1.40014 * 108.51910 * 359.97438 * 15 14 13 17 17 C 1.46495 * 125.91322 * 180.02562 * 16 15 14 18 18 C 1.34989 * 108.17621 * 359.76803 * 16 15 14 19 19 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 20 20 C 1.53951 * 113.74032 * 158.74104 * 19 2 1 21 21 N 1.47814 * 86.03241 * 222.08256 * 20 19 2 22 22 C 1.36936 * 134.45554 * 204.64600 * 21 20 19 23 23 H 1.08000 * 119.99930 * 179.86546 * 22 21 20 24 24 C 1.38813 * 120.00235 * 359.86773 * 22 21 20 25 25 N 1.31620 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00507 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47027 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47478 * 119.99768 * 26 24 22 29 29 H 1.48503 * 109.47374 * 239.99813 * 26 24 22 30 30 C 1.47582 * 91.05472 * 24.54901 * 21 20 19 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 35 35 H 1.08002 * 125.67095 * 359.97314 * 8 7 5 36 36 H 1.07991 * 125.66534 * 180.02562 * 11 9 8 37 37 H 1.08007 * 125.93797 * 359.94016 * 14 13 12 38 38 H 1.08995 * 109.47348 * 89.97399 * 17 16 15 39 39 H 1.09006 * 109.46936 * 209.97590 * 17 16 15 40 40 H 1.08998 * 109.47079 * 329.96775 * 17 16 15 41 41 H 1.07997 * 126.20142 * 180.24575 * 18 16 15 42 42 H 1.08996 * 112.94085 * 290.33107 * 19 2 1 43 43 H 1.08995 * 113.76589 * 336.34430 * 20 19 2 44 44 H 1.08995 * 113.76867 * 107.74965 * 20 19 2 45 45 H 0.96994 * 120.00624 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.77067 * 221.15214 * 30 21 20 47 47 H 1.09004 * 113.87049 * 89.76457 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1620 2.4116 7 6 2.6370 -0.7120 3.5583 8 6 3.0008 -2.0259 3.6577 9 7 3.3922 -2.2701 4.9227 10 1 3.6989 -3.1301 5.2503 11 6 3.2971 -1.1385 5.6792 12 6 2.8407 -0.1298 4.8962 13 6 2.5931 1.2763 5.3052 14 6 3.0533 2.4293 4.6408 15 7 2.6318 3.4751 5.3019 16 7 1.8911 3.0348 6.4054 17 6 1.2428 3.8907 7.4020 18 6 1.8730 1.6851 6.3890 19 6 2.0400 -0.7212 -1.2494 20 6 3.4848 -0.3519 -1.6317 21 7 2.9978 -0.3175 -3.0269 22 6 3.5874 -0.4754 -4.2527 23 1 2.9926 -0.4035 -5.1513 24 6 4.9495 -0.7281 -4.3404 25 7 5.6744 -0.8154 -3.2453 26 14 5.7540 -0.9429 -6.0125 27 1 4.7288 -0.7991 -7.0772 28 1 6.8043 0.0913 -6.1931 29 1 6.3684 -2.2923 -6.0966 30 6 1.6213 -0.0470 -2.5685 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 2.9780 -2.7481 2.8551 36 1 3.5487 -1.0581 6.7263 37 1 3.6513 2.4466 3.7416 38 1 0.2264 4.1174 7.0802 39 1 1.2135 3.3736 8.3612 40 1 1.8063 4.8179 7.5063 41 1 1.3799 1.0451 7.1056 42 1 1.8528 -1.7947 -1.2264 43 1 3.8046 0.6192 -1.2540 44 1 4.2071 -1.1446 -1.4368 45 1 6.6261 -0.9923 -3.3064 46 1 0.8586 -0.5967 -3.1200 47 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969656504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:31 Heat of formation + Delta-G solvation = 147.245310 kcal Electronic energy + Delta-G solvation = -29315.639848 eV Core-core repulsion = 25310.093812 eV Total energy + Delta-G solvation = -4005.546036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35888 -40.62239 -39.15837 -37.72199 -34.54865 -33.44430 -32.17482 -31.71906 -30.92828 -29.32651 -28.41390 -27.43285 -26.48196 -24.83288 -23.99250 -22.88742 -21.91815 -21.11841 -20.70084 -19.69512 -19.39714 -18.74344 -18.28852 -16.69210 -16.51420 -16.01267 -15.72349 -15.39917 -14.84329 -14.73990 -14.33219 -14.03084 -13.91019 -13.79180 -13.75520 -13.46674 -13.13334 -12.88962 -12.84546 -12.72688 -12.58689 -12.33006 -11.98324 -11.91036 -11.55713 -11.21842 -11.20452 -10.86110 -10.66330 -10.63851 -10.24505 -9.86926 -9.64753 -9.52524 -9.32495 -9.29867 -9.11003 -8.74315 -8.63815 -8.40592 -7.81100 -6.80382 -5.70881 -3.02635 1.77087 1.87111 2.31305 2.55969 3.08344 3.19563 3.42010 3.47322 3.49937 3.63607 3.87726 4.48371 4.50338 4.79500 4.84314 4.96588 4.98859 5.06733 5.17153 5.20281 5.29719 5.37892 5.42889 5.52322 5.62348 5.72938 5.78139 5.81014 5.87353 5.95826 6.05788 6.16800 6.18844 6.38117 6.49319 6.52851 6.65051 6.70321 6.76006 6.80737 6.88747 7.01174 7.04436 7.31648 7.31970 7.45947 7.63372 7.84259 8.00146 8.04434 8.74621 9.10819 9.76868 10.67359 11.46248 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.002372 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.521489 B =11801.739735 C =12161.588258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.087 0.913 4 N -0.719 5.719 5 C 0.585 3.415 6 O -0.539 6.539 7 C -0.211 4.211 8 C 0.045 3.955 9 N -0.549 5.549 10 H 0.417 0.583 11 C -0.020 4.020 12 C -0.032 4.032 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.306 5.306 16 N -0.384 5.384 17 C 0.106 3.894 18 C 0.054 3.946 19 C -0.145 4.145 20 C 0.172 3.828 21 N -0.614 5.614 22 C -0.220 4.220 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.910 3.090 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.130 3.870 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.394 0.606 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.169 0.831 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.252 0.748 46 H 0.043 0.957 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 -2.825 25.338 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.105 0.895 4 N -0.369 5.369 5 C 0.372 3.628 6 O -0.416 6.416 7 C -0.222 4.222 8 C -0.091 4.091 9 N -0.143 5.143 10 H 0.253 0.747 11 C -0.149 4.149 12 C -0.040 4.040 13 C -0.166 4.166 14 C -0.086 4.086 15 N -0.126 5.126 16 N -0.166 5.166 17 C -0.036 4.036 18 C -0.092 4.092 19 C -0.165 4.165 20 C 0.047 3.953 21 N -0.340 5.340 22 C -0.347 4.347 23 H 0.097 0.903 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.190 0.810 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.187 0.813 42 H 0.104 0.896 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.922 -0.730 25.370 26.903 hybrid contribution 0.735 -1.858 -0.873 2.180 sum -8.187 -2.587 24.497 25.959 Atomic orbital electron populations 1.22123 0.96030 1.01475 1.01917 1.21003 0.93186 0.97575 0.83317 0.89534 1.45925 1.67720 1.13699 1.09583 1.17340 0.77180 0.86267 0.81978 1.90775 1.50625 1.15349 1.84875 1.20509 1.13585 0.93322 0.94748 1.21914 1.02371 0.97189 0.87590 1.41396 1.52213 1.11688 1.09024 0.74654 1.21710 1.10046 0.85613 0.97497 1.18243 1.03808 0.90594 0.91338 1.18010 1.08296 0.91846 0.98495 1.23889 0.97804 0.88752 0.98180 1.77289 1.13526 1.23408 0.98419 1.48302 1.42000 1.04435 1.21841 1.21756 0.97639 0.95187 0.89003 1.22375 1.01492 0.84980 1.00393 1.23788 1.00835 0.99501 0.92413 1.22281 0.91404 0.98511 0.83125 1.46034 1.03371 1.82569 1.02060 1.19073 0.91428 1.41205 0.83041 0.90299 1.24779 0.96064 1.02605 0.97198 1.69830 1.05960 1.55426 1.25629 0.86067 0.79322 0.77318 0.83194 1.20503 1.21791 1.21798 1.22492 0.89542 0.96644 0.91023 0.92796 0.92975 0.91714 0.77280 0.81015 0.81515 0.80156 0.91087 0.89881 0.89510 0.81342 0.89606 0.95559 0.91143 0.93793 0.93900 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.31 37.16 0.35 -1.89 16 2 C 0.15 2.49 2.38 -67.93 -0.16 2.33 16 3 H 0.09 1.63 7.41 -51.93 -0.38 1.25 16 4 N -0.72 -10.28 5.07 -54.98 -0.28 -10.56 16 5 C 0.58 9.22 7.77 -12.66 -0.10 9.12 16 6 O -0.54 -10.33 14.24 5.24 0.07 -10.26 16 7 C -0.21 -2.74 6.30 -103.16 -0.65 -3.39 16 8 C 0.05 0.41 11.39 -16.88 -0.19 0.22 16 9 N -0.55 -3.81 5.89 -12.61 -0.07 -3.89 16 10 H 0.42 1.39 8.96 -40.82 -0.37 1.02 16 11 C -0.02 -0.17 11.87 -16.44 -0.20 -0.37 16 12 C -0.03 -0.39 6.18 -102.91 -0.64 -1.03 16 13 C -0.15 -2.08 5.48 -105.35 -0.58 -2.65 16 14 C 0.10 1.57 10.38 -17.06 -0.18 1.39 16 15 N -0.31 -4.72 12.54 30.80 0.39 -4.33 16 16 N -0.38 -4.53 4.01 -67.87 -0.27 -4.80 16 17 C 0.11 0.72 11.46 59.84 0.69 1.41 16 18 C 0.05 0.59 11.45 -16.83 -0.19 0.40 16 19 C -0.15 -2.66 3.47 -89.69 -0.31 -2.97 16 20 C 0.17 4.08 7.08 -2.83 -0.02 4.06 16 21 N -0.61 -16.05 3.70 -177.71 -0.66 -16.70 16 22 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 23 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.92 -27.70 11.39 55.49 0.63 -27.06 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C 0.13 2.67 7.64 -2.97 -0.02 2.65 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.89 7.52 -51.93 -0.39 0.50 16 34 H 0.39 4.64 7.54 -40.82 -0.31 4.33 16 35 H 0.17 1.10 7.44 -52.49 -0.39 0.71 16 36 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.18 2.90 7.83 -52.48 -0.41 2.49 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.03 0.67 7.99 -51.93 -0.41 0.25 16 44 H 0.07 1.82 7.17 -51.93 -0.37 1.45 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -38.66 395.27 -8.53 -47.19 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.81 Total: 4.57 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.46 Total: 2.43 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.26 Total: -67.34 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.66 -8.53 -47.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969656504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.435 kcal (2) G-P(sol) polarization free energy of solvation -38.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds