Wall clock time and date at job start Wed Apr 1 2020 02:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21642 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.47111 * 120.00232 * 179.97438 * 5 4 2 8 8 C 1.36699 * 126.95570 * 0.02859 * 7 5 4 9 9 N 1.34643 * 108.66397 * 179.97438 * 8 7 5 10 10 H 0.97005 * 124.75040 * 180.02562 * 9 8 7 11 11 C 1.36449 * 110.49849 * 0.02562 * 9 8 7 12 12 C 1.35601 * 108.67589 * 359.70990 * 11 9 8 13 13 C 1.48520 * 126.96428 * 180.27131 * 12 11 9 14 14 C 1.40812 * 126.21435 * 130.22562 * 13 12 11 15 15 N 1.30704 * 108.12790 * 179.97438 * 14 13 12 16 16 N 1.40014 * 108.51910 * 359.97438 * 15 14 13 17 17 C 1.46495 * 125.91322 * 180.02562 * 16 15 14 18 18 C 1.34989 * 108.17621 * 359.76803 * 16 15 14 19 19 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 20 20 C 1.53951 * 113.74032 * 158.74104 * 19 2 1 21 21 N 1.47814 * 86.03241 * 222.08256 * 20 19 2 22 22 C 1.36936 * 134.45554 * 204.64600 * 21 20 19 23 23 H 1.08000 * 119.99930 * 179.86546 * 22 21 20 24 24 C 1.38813 * 120.00235 * 359.86773 * 22 21 20 25 25 N 1.31620 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00507 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47027 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47478 * 119.99768 * 26 24 22 29 29 H 1.48503 * 109.47374 * 239.99813 * 26 24 22 30 30 C 1.47582 * 91.05472 * 24.54901 * 21 20 19 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 35 35 H 1.08002 * 125.67095 * 359.97314 * 8 7 5 36 36 H 1.07991 * 125.66534 * 180.02562 * 11 9 8 37 37 H 1.08007 * 125.93797 * 359.94016 * 14 13 12 38 38 H 1.08995 * 109.47348 * 89.97399 * 17 16 15 39 39 H 1.09006 * 109.46936 * 209.97590 * 17 16 15 40 40 H 1.08998 * 109.47079 * 329.96775 * 17 16 15 41 41 H 1.07997 * 126.20142 * 180.24575 * 18 16 15 42 42 H 1.08996 * 112.94085 * 290.33107 * 19 2 1 43 43 H 1.08995 * 113.76589 * 336.34430 * 20 19 2 44 44 H 1.08995 * 113.76867 * 107.74965 * 20 19 2 45 45 H 0.96994 * 120.00624 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.77067 * 221.15214 * 30 21 20 47 47 H 1.09004 * 113.87049 * 89.76457 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1620 2.4116 7 6 2.6370 -0.7120 3.5583 8 6 3.0008 -2.0259 3.6577 9 7 3.3922 -2.2701 4.9227 10 1 3.6989 -3.1301 5.2503 11 6 3.2971 -1.1385 5.6792 12 6 2.8407 -0.1298 4.8962 13 6 2.5931 1.2763 5.3052 14 6 3.0533 2.4293 4.6408 15 7 2.6318 3.4751 5.3019 16 7 1.8911 3.0348 6.4054 17 6 1.2428 3.8907 7.4020 18 6 1.8730 1.6851 6.3890 19 6 2.0400 -0.7212 -1.2494 20 6 3.4848 -0.3519 -1.6317 21 7 2.9978 -0.3175 -3.0269 22 6 3.5874 -0.4754 -4.2527 23 1 2.9926 -0.4035 -5.1513 24 6 4.9495 -0.7281 -4.3404 25 7 5.6744 -0.8154 -3.2453 26 14 5.7540 -0.9429 -6.0125 27 1 4.7288 -0.7991 -7.0772 28 1 6.8043 0.0913 -6.1931 29 1 6.3684 -2.2923 -6.0966 30 6 1.6213 -0.0470 -2.5685 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 2.9780 -2.7481 2.8551 36 1 3.5487 -1.0581 6.7263 37 1 3.6513 2.4466 3.7416 38 1 0.2264 4.1174 7.0802 39 1 1.2135 3.3736 8.3612 40 1 1.8063 4.8179 7.5063 41 1 1.3799 1.0451 7.1056 42 1 1.8528 -1.7947 -1.2264 43 1 3.8046 0.6192 -1.2540 44 1 4.2071 -1.1446 -1.4368 45 1 6.6261 -0.9923 -3.3064 46 1 0.8586 -0.5967 -3.1200 47 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969656504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:30 Heat of formation + Delta-G solvation = 119.164523 kcal Electronic energy + Delta-G solvation = -29316.857523 eV Core-core repulsion = 25310.093812 eV Total energy + Delta-G solvation = -4006.763710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18821 -41.48715 -40.53144 -39.27211 -35.99623 -34.27312 -34.11912 -32.61368 -32.17238 -30.35756 -29.35482 -29.15319 -27.22911 -26.58414 -25.64830 -24.20027 -22.73473 -22.43147 -21.79356 -21.09100 -20.30199 -19.79228 -19.27512 -18.71601 -17.32642 -17.12854 -17.06452 -16.86051 -16.20066 -15.80747 -15.71242 -15.27920 -15.15681 -14.86092 -14.73692 -14.56252 -14.40458 -14.13948 -13.86654 -13.68806 -13.53459 -13.36674 -13.22931 -13.20074 -13.06530 -12.89790 -12.76220 -12.64818 -12.46511 -11.93164 -11.71768 -11.62290 -11.42311 -11.20739 -10.88127 -10.70721 -10.26290 -10.00577 -9.84264 -9.25779 -8.90464 -8.62471 -7.88965 -5.22739 0.87732 1.05321 1.43292 1.45221 1.47060 1.57128 1.80719 2.17676 2.39843 2.48333 2.59916 2.81141 3.31720 3.41315 3.77511 3.79475 4.01269 4.11006 4.21428 4.23787 4.35753 4.40716 4.45348 4.49059 4.55661 4.63011 4.69496 4.72991 4.77310 4.86762 4.90079 4.94181 4.94535 5.03090 5.05639 5.18951 5.28484 5.36186 5.37652 5.54702 5.64829 5.71810 5.76664 5.88160 5.95338 6.09021 6.29079 6.79137 6.85651 6.90632 6.93321 7.59852 7.62121 8.58669 9.28066 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.002372 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.521489 B =11801.739735 C =12161.588258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.164 3.836 3 H 0.051 0.949 4 N -0.712 5.712 5 C 0.579 3.421 6 O -0.585 6.585 7 C -0.257 4.257 8 C 0.067 3.933 9 N -0.529 5.529 10 H 0.439 0.561 11 C 0.005 3.995 12 C -0.070 4.070 13 C -0.175 4.175 14 C 0.073 3.927 15 N -0.347 5.347 16 N -0.382 5.382 17 C 0.095 3.905 18 C 0.068 3.932 19 C -0.105 4.105 20 C 0.170 3.830 21 N -0.645 5.645 22 C -0.233 4.233 23 H 0.084 0.916 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.980 3.020 27 H -0.264 1.264 28 H -0.296 1.296 29 H -0.288 1.288 30 C 0.129 3.871 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.408 0.592 35 H 0.201 0.799 36 H 0.203 0.797 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.215 0.785 42 H 0.108 0.892 43 H -0.002 1.002 44 H 0.044 0.956 45 H 0.248 0.752 46 H 0.066 0.934 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -5.580 27.223 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.363 5.363 5 C 0.369 3.631 6 O -0.466 6.466 7 C -0.268 4.268 8 C -0.071 4.071 9 N -0.124 5.124 10 H 0.280 0.720 11 C -0.124 4.124 12 C -0.078 4.078 13 C -0.187 4.187 14 C -0.113 4.113 15 N -0.169 5.169 16 N -0.164 5.164 17 C -0.045 4.045 18 C -0.079 4.079 19 C -0.125 4.125 20 C 0.044 3.956 21 N -0.371 5.371 22 C -0.362 4.362 23 H 0.102 0.898 24 C -0.264 4.264 25 N -0.603 5.603 26 Si 0.808 3.192 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.215 1.215 30 C 0.003 3.997 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.244 0.756 35 H 0.218 0.782 36 H 0.220 0.780 37 H 0.171 0.829 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.232 0.768 42 H 0.126 0.874 43 H 0.016 0.984 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.505 -3.525 27.270 29.435 hybrid contribution 1.194 -0.966 -1.369 2.057 sum -9.311 -4.490 25.902 27.888 Atomic orbital electron populations 1.22015 0.93778 1.02940 1.01711 1.20698 0.94699 0.95557 0.83229 0.93098 1.45773 1.67587 1.14238 1.08706 1.17868 0.76384 0.85881 0.82935 1.90748 1.52774 1.17424 1.85654 1.20428 1.16953 0.95219 0.94158 1.22210 0.99901 0.96045 0.88912 1.41436 1.50495 1.12399 1.08075 0.72019 1.22105 1.07162 0.84693 0.98483 1.18442 1.06382 0.91004 0.91946 1.18281 1.09066 0.92072 0.99243 1.23679 0.98918 0.90483 0.98188 1.77155 1.15315 1.24157 1.00323 1.48701 1.40949 1.05565 1.21201 1.22170 0.97471 0.95326 0.89501 1.23008 0.99897 0.84885 1.00085 1.23415 0.96061 1.00567 0.92479 1.22146 0.94139 0.96275 0.82997 1.46482 1.05879 1.82764 1.02022 1.19496 0.91974 1.40287 0.84408 0.89781 1.25663 0.96767 1.03071 1.00865 1.70026 1.05789 1.56792 1.27730 0.84993 0.78165 0.76817 0.79249 1.18852 1.22344 1.21506 1.22680 0.87692 0.97372 0.91918 0.93819 0.90561 0.91136 0.75596 0.78231 0.78049 0.82934 0.90299 0.85865 0.89529 0.76840 0.87390 0.98439 0.93736 0.94351 0.91591 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.31 71.98 0.67 -3.33 16 2 C 0.16 5.36 2.38 44.99 0.11 5.47 16 3 H 0.05 2.05 7.41 -2.39 -0.02 2.04 16 4 N -0.71 -20.51 5.07 -446.10 -2.26 -22.77 16 5 C 0.58 19.05 7.77 86.57 0.67 19.73 16 6 O -0.58 -24.27 14.24 -4.16 -0.06 -24.33 16 7 C -0.26 -6.61 6.30 -18.92 -0.12 -6.73 16 8 C 0.07 1.06 11.39 83.90 0.96 2.02 16 9 N -0.53 -5.39 5.89 -193.82 -1.14 -6.53 16 10 H 0.44 0.90 8.96 -92.70 -0.83 0.07 16 11 C 0.00 0.07 11.87 83.36 0.99 1.06 16 12 C -0.07 -1.68 6.18 -18.75 -0.12 -1.80 16 13 C -0.17 -4.80 5.48 -20.34 -0.11 -4.91 16 14 C 0.07 2.49 10.38 85.49 0.89 3.38 16 15 N -0.35 -11.44 12.54 -56.46 -0.71 -12.15 16 16 N -0.38 -8.83 4.01 -368.64 -1.48 -10.31 16 17 C 0.09 1.13 11.46 127.77 1.46 2.60 16 18 C 0.07 1.40 11.45 83.78 0.96 2.36 16 19 C -0.11 -3.82 3.47 -10.13 -0.04 -3.85 16 20 C 0.17 8.38 7.08 86.44 0.61 8.99 16 21 N -0.65 -34.18 3.70 -716.14 -2.65 -36.83 16 22 C -0.23 -13.46 10.70 84.03 0.90 -12.56 16 23 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.95 -59.13 11.39 21.65 0.25 -58.88 16 26 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 30 C 0.13 5.22 7.64 86.49 0.66 5.88 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.84 7.52 -2.38 -0.02 1.82 16 34 H 0.41 9.14 7.54 -92.71 -0.70 8.44 16 35 H 0.20 1.88 7.44 -2.91 -0.02 1.86 16 36 H 0.20 1.33 8.06 -2.92 -0.02 1.31 16 37 H 0.15 5.77 7.83 -2.91 -0.02 5.75 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.00 -0.12 7.99 -2.39 -0.02 -0.14 16 44 H 0.04 2.41 7.17 -2.39 -0.02 2.39 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.04 1.55 8.10 -2.38 -0.02 1.53 16 Total: -1.00 -91.30 395.27 2.42 -88.88 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.52 Total: 19.54 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 8.96 Total: 14.60 kcal Atomic # 7 Polarization: -139.49 SS G_CDS: -7.99 Total: -147.48 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -91.30 2.42 -88.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969656504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.042 kcal (2) G-P(sol) polarization free energy of solvation -91.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds