Wall clock time and date at job start Wed Apr 1 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58554 * 2 1 4 4 C 1.53188 * 109.70508 * 120.36309 * 2 1 3 5 5 H 1.09008 * 109.49461 * 294.43805 * 4 2 1 6 6 N 1.46499 * 109.50108 * 54.50451 * 4 2 1 7 7 C 1.34778 * 119.99976 * 205.00189 * 6 4 2 8 8 O 1.21591 * 119.99734 * 359.97438 * 7 6 4 9 9 C 1.47535 * 120.00012 * 180.02562 * 7 6 4 10 10 C 1.39415 * 120.75107 * 39.26282 * 9 7 6 11 11 N 1.31919 * 121.01012 * 180.02562 * 10 9 7 12 12 C 1.31788 * 122.60243 * 0.02562 * 11 10 9 13 13 C 1.39438 * 120.63697 * 359.97438 * 12 11 10 14 14 N 1.35705 * 134.44047 * 179.97438 * 13 12 11 15 15 C 1.30133 * 109.50402 * 180.02562 * 14 13 12 16 16 N 1.36249 * 110.05586 * 0.02562 * 15 14 13 17 17 C 1.46504 * 126.29664 * 180.02562 * 16 15 14 18 18 C 1.36925 * 107.41127 * 359.74267 * 16 15 14 19 19 C 1.53036 * 109.31153 * 174.49164 * 4 2 1 20 20 C 1.53046 * 109.53890 * 298.63040 * 19 4 2 21 21 C 1.52759 * 109.38007 * 61.23886 * 20 19 4 22 22 N 1.46922 * 109.58163 * 239.72013 * 2 1 3 23 23 C 1.36933 * 120.63468 * 6.43874 * 22 2 1 24 24 H 1.08003 * 120.00154 * 325.90804 * 23 22 2 25 25 C 1.38818 * 120.00358 * 145.90931 * 23 22 2 26 26 N 1.31618 * 119.99722 * 339.43136 * 25 23 22 27 27 Si 1.86801 * 120.00066 * 159.43284 * 25 23 22 28 28 H 1.48502 * 109.46962 * 180.02562 * 27 25 23 29 29 H 1.48502 * 109.46908 * 299.99652 * 27 25 23 30 30 H 1.48494 * 109.47250 * 59.99736 * 27 25 23 31 31 H 1.09004 * 109.47323 * 180.28286 * 1 2 3 32 32 H 1.09009 * 109.46928 * 300.27931 * 1 2 3 33 33 H 1.09001 * 109.47915 * 60.27913 * 1 2 3 34 34 H 0.96996 * 119.99744 * 24.99997 * 6 4 2 35 35 H 1.07993 * 119.49232 * 359.97438 * 10 9 7 36 36 H 1.08007 * 119.68391 * 180.02562 * 12 11 10 37 37 H 1.07999 * 124.96620 * 180.02562 * 15 14 13 38 38 H 1.09008 * 109.47098 * 94.05705 * 17 16 15 39 39 H 1.08997 * 109.47655 * 214.05827 * 17 16 15 40 40 H 1.08999 * 109.46980 * 334.06307 * 17 16 15 41 41 H 1.09005 * 109.46402 * 58.65034 * 19 4 2 42 42 H 1.09005 * 109.46366 * 178.62304 * 19 4 2 43 43 H 1.08995 * 109.49771 * 181.31699 * 20 19 4 44 44 H 1.09000 * 109.49386 * 301.38615 * 20 19 4 45 45 H 1.08998 * 109.50748 * 185.70601 * 21 20 19 46 46 H 1.09001 * 109.42999 * 65.42911 * 21 20 19 47 47 H 0.97001 * 119.99859 * 356.72194 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7290 1.2444 5 1 1.7690 -0.1674 2.1364 6 7 1.4565 -2.0685 1.3066 7 6 1.3363 -2.6975 2.4925 8 8 1.7179 -2.1533 3.5107 9 6 0.7426 -4.0467 2.5551 10 6 1.0231 -4.9951 1.5726 11 7 0.4947 -6.2028 1.6233 12 6 -0.3179 -6.5824 2.5888 13 6 -0.6585 -5.7045 3.6172 14 7 -1.4451 -5.7918 4.7195 15 6 -1.4197 -4.6604 5.3621 16 7 -0.6151 -3.7726 4.7135 17 6 -0.3325 -2.3958 5.1268 18 6 -0.1140 -4.4059 3.6077 19 6 3.5706 -0.8444 1.1672 20 6 3.9602 -1.6608 -0.0673 21 6 3.4646 -0.9474 -1.3239 22 7 2.0224 -0.6980 -1.1954 23 6 1.1532 -1.1132 -2.1686 24 1 0.1621 -1.4482 -1.9003 25 6 1.5458 -1.1036 -3.5001 26 7 2.5517 -0.3466 -3.8841 27 14 0.6465 -2.1650 -4.7467 28 1 1.2550 -1.9762 -6.0881 29 1 0.7546 -3.5923 -4.3511 30 1 -0.7845 -1.7709 -4.7918 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8876 33 1 -0.3635 0.5095 -0.8924 34 1 1.1524 -2.5027 0.4943 35 1 1.6824 -4.7369 0.7571 36 1 -0.7235 -7.5834 2.5840 37 1 -1.9577 -4.4554 6.2759 38 1 0.5835 -2.3744 5.7174 39 1 -0.2099 -1.7691 4.2435 40 1 -1.1607 -2.0195 5.7272 41 1 4.0072 0.1518 1.0962 42 1 3.9430 -1.3412 2.0631 43 1 5.0446 -1.7625 -0.1089 44 1 3.5040 -2.6491 -0.0087 45 1 3.6508 -1.5745 -2.1958 46 1 3.9911 0.0007 -1.4341 47 1 2.9880 0.2402 -3.2467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993441265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:52 Heat of formation + Delta-G solvation = 72.052915 kcal Electronic energy + Delta-G solvation = -31392.526630 eV Core-core repulsion = 27383.720007 eV Total energy + Delta-G solvation = -4008.806623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.64631 -40.00080 -38.61661 -37.78287 -34.46777 -34.20838 -32.75108 -32.16758 -31.42996 -30.16868 -29.20670 -27.40959 -26.44540 -25.06588 -24.69591 -23.12290 -22.58230 -21.56179 -21.08654 -20.16899 -18.92981 -18.04482 -17.73845 -17.28968 -17.09162 -16.26397 -15.62028 -15.56860 -15.09363 -14.73678 -14.61133 -14.38946 -14.14185 -13.89552 -13.74871 -13.64948 -13.47992 -13.18002 -12.88867 -12.71268 -12.61059 -12.28846 -11.93381 -11.57580 -11.35190 -11.12415 -10.90356 -10.76631 -10.69609 -10.62226 -10.33349 -10.31744 -10.14999 -10.11038 -9.86183 -9.47911 -9.19544 -9.13590 -8.76915 -8.47617 -8.44642 -6.91866 -6.12208 -3.40151 0.32266 1.21837 2.29570 2.33418 2.88305 3.32789 3.44629 3.47851 3.64877 3.71892 3.88939 4.16496 4.33398 4.49449 4.50306 4.74673 4.78782 4.97441 5.06067 5.08006 5.20874 5.26136 5.37104 5.44867 5.47559 5.50751 5.53603 5.73606 5.87040 5.93290 6.04947 6.06115 6.09134 6.23164 6.28284 6.29937 6.40111 6.45736 6.54728 6.70836 6.73686 6.79803 6.89821 6.99583 7.11140 7.40719 7.74468 7.81472 7.96470 8.30706 8.52397 9.02007 9.75561 10.20982 11.15272 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003809 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.347252 B = 7349.344205 C = 8334.238823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.160 3.840 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.077 0.923 6 N -0.688 5.688 7 C 0.559 3.441 8 O -0.552 6.552 9 C -0.170 4.170 10 C 0.139 3.861 11 N -0.485 5.485 12 C 0.192 3.808 13 C -0.018 4.018 14 N -0.479 5.479 15 C 0.258 3.742 16 N -0.477 5.477 17 C 0.083 3.917 18 C 0.120 3.880 19 C -0.121 4.121 20 C -0.135 4.135 21 C 0.152 3.848 22 N -0.592 5.592 23 C -0.355 4.355 24 H 0.058 0.942 25 C -0.016 4.016 26 N -0.914 5.914 27 Si 1.065 2.935 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.293 1.293 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.219 0.781 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.017 0.983 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 -4.931 16.799 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.056 0.944 4 C 0.028 3.972 5 H 0.095 0.905 6 N -0.338 5.338 7 C 0.344 3.656 8 O -0.433 6.433 9 C -0.178 4.178 10 C -0.013 4.013 11 N -0.194 5.194 12 C 0.026 3.974 13 C -0.139 4.139 14 N -0.198 5.198 15 C -0.028 4.028 16 N -0.165 5.165 17 C -0.058 4.058 18 C 0.001 3.999 19 C -0.159 4.159 20 C -0.175 4.175 21 C 0.027 3.973 22 N -0.317 5.317 23 C -0.484 4.484 24 H 0.075 0.925 25 C -0.220 4.220 26 N -0.553 5.553 27 Si 0.895 3.105 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.220 1.220 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.035 0.965 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.024 -6.082 15.421 17.322 hybrid contribution 0.179 1.755 1.834 2.545 sum -4.846 -4.326 17.255 18.438 Atomic orbital electron populations 1.21739 0.95381 1.01425 1.00365 1.20723 0.93593 0.93672 0.86675 0.94432 1.21588 0.92992 0.82683 0.99965 0.90492 1.46015 1.60478 1.18473 1.08816 1.17943 0.78822 0.84577 0.84215 1.90726 1.50822 1.67387 1.34331 1.19962 1.03651 0.97440 0.96757 1.22868 0.95646 0.87567 0.95212 1.67717 1.10016 1.17896 1.23809 1.22307 0.90660 0.98503 0.85945 1.20137 1.01642 0.93790 0.98324 1.70462 1.21077 1.22263 1.05975 1.25558 0.94121 0.84238 0.98897 1.45203 1.37769 1.13804 1.19693 1.22250 1.02396 0.78184 1.03017 1.18654 0.97768 0.93775 0.89746 1.21770 0.95322 1.00550 0.98298 1.21961 0.99219 0.99584 0.96695 1.20871 0.84388 0.96743 0.95334 1.44183 1.02535 1.65246 1.19772 1.19840 0.98412 1.42698 0.87470 0.92482 1.25944 1.00090 0.99391 0.96547 1.70787 1.24722 1.22341 1.37468 0.83512 0.75025 0.75749 0.76262 1.21135 1.21784 1.21989 0.92866 0.94471 0.91608 0.75118 0.81322 0.81416 0.76435 0.89709 0.88843 0.89895 0.91775 0.92779 0.93066 0.92544 0.90696 0.96475 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.78 37.16 0.29 -2.02 16 2 C 0.16 2.98 3.19 -67.60 -0.22 2.77 16 3 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.13 2.18 2.33 -67.81 -0.16 2.02 16 5 H 0.08 1.23 7.58 -51.92 -0.39 0.84 16 6 N -0.69 -10.74 3.40 -54.73 -0.19 -10.93 16 7 C 0.56 8.60 6.72 -12.47 -0.08 8.51 16 8 O -0.55 -9.18 13.18 5.29 0.07 -9.11 16 9 C -0.17 -2.48 5.77 -104.86 -0.61 -3.08 16 10 C 0.14 1.96 10.52 -17.08 -0.18 1.78 16 11 N -0.48 -6.82 10.30 -12.64 -0.13 -6.95 16 12 C 0.19 2.45 11.25 -17.12 -0.19 2.26 16 13 C -0.02 -0.25 7.27 -84.73 -0.62 -0.86 16 14 N -0.48 -6.02 11.28 -12.01 -0.14 -6.16 16 15 C 0.26 2.51 12.50 -89.57 -1.12 1.39 16 16 N -0.48 -5.48 3.18 -122.87 -0.39 -5.87 16 17 C 0.08 0.79 9.46 59.85 0.57 1.35 16 18 C 0.12 1.70 6.77 -83.81 -0.57 1.13 16 19 C -0.12 -1.96 5.58 -26.69 -0.15 -2.11 16 20 C -0.14 -2.36 5.91 -26.83 -0.16 -2.52 16 21 C 0.15 3.22 4.64 -3.93 -0.02 3.21 16 22 N -0.59 -12.91 2.44 -165.04 -0.40 -13.31 16 23 C -0.36 -8.73 8.36 -15.06 -0.13 -8.85 16 24 H 0.06 1.40 6.43 -52.48 -0.34 1.06 16 25 C -0.02 -0.42 4.77 -17.43 -0.08 -0.51 16 26 N -0.91 -25.82 12.68 55.49 0.70 -25.12 16 27 Si 1.06 23.92 29.97 -169.99 -5.09 18.82 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.05 0.94 6.38 -51.93 -0.33 0.61 16 32 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 34 H 0.41 6.81 7.20 -40.82 -0.29 6.52 16 35 H 0.17 2.22 7.83 -52.49 -0.41 1.81 16 36 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.22 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.08 0.84 7.91 -51.92 -0.41 0.43 16 39 H 0.09 1.10 6.01 -51.93 -0.31 0.79 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.00 7.53 -51.93 -0.39 0.60 16 45 H 0.07 1.80 6.67 -51.93 -0.35 1.46 16 46 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 47 H 0.27 7.68 6.48 -40.82 -0.26 7.41 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -30.66 370.96 -9.86 -40.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.47 Total: 8.04 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -3.42 Total: 4.47 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -0.54 Total: -68.34 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.66 -9.86 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993441265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.579 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds