Wall clock time and date at job start Wed Apr 1 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 N 1.46501 * 109.47464 * 119.99457 * 2 1 3 5 5 C 1.34779 * 120.00238 * 275.00738 * 4 2 1 6 6 O 1.21574 * 120.00012 * 359.97438 * 5 4 2 7 7 C 1.47683 * 119.99675 * 179.97438 * 5 4 2 8 8 C 1.40176 * 120.41449 * 359.97438 * 7 5 4 9 9 N 1.31190 * 121.37674 * 179.97438 * 8 7 5 10 10 C 1.32931 * 121.84203 * 359.97438 * 9 8 7 11 11 N 1.36634 * 133.26578 * 180.02562 * 10 9 8 12 12 H 0.97001 * 125.33866 * 359.95695 * 11 10 9 13 13 N 1.39802 * 109.31583 * 180.02562 * 11 10 9 14 14 C 1.30197 * 110.13207 * 359.97438 * 13 11 10 15 15 C 1.41064 * 120.20469 * 0.02562 * 10 9 8 16 16 C 1.39511 * 120.40363 * 179.71698 * 7 5 4 17 17 C 1.52996 * 109.47566 * 239.99911 * 2 1 3 18 18 C 1.53042 * 109.45963 * 64.99316 * 17 2 1 19 19 C 1.53192 * 109.31334 * 178.61645 * 18 17 2 20 20 N 1.46923 * 108.77651 * 54.63913 * 19 18 17 21 21 C 1.36935 * 120.63374 * 126.36527 * 20 19 18 22 22 H 1.07995 * 119.99873 * 332.38583 * 21 20 19 23 23 C 1.38811 * 119.99806 * 152.37964 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46933 * 118.73785 * 306.64582 * 20 19 18 30 30 C 1.52757 * 109.00863 * 53.30252 * 29 20 19 31 31 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47349 * 299.99760 * 1 2 3 33 33 H 1.08994 * 109.47211 * 60.00586 * 1 2 3 34 34 H 0.96999 * 119.99938 * 94.99798 * 4 2 1 35 35 H 1.07997 * 119.31376 * 359.97438 * 8 7 5 36 36 H 1.08007 * 126.20395 * 180.02562 * 14 13 11 37 37 H 1.08002 * 121.02915 * 0.02562 * 16 7 5 38 38 H 1.08995 * 109.46640 * 184.97141 * 17 2 1 39 39 H 1.09002 * 109.49413 * 58.66694 * 18 17 2 40 40 H 1.09002 * 109.53037 * 298.58630 * 18 17 2 41 41 H 1.09006 * 109.58761 * 294.85230 * 19 18 17 42 42 H 1.09001 * 109.58712 * 174.42799 * 19 18 17 43 43 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 44 44 H 1.08994 * 109.58881 * 173.14244 * 29 20 19 45 45 H 1.09000 * 109.58205 * 293.56720 * 29 20 19 46 46 H 1.09003 * 109.56516 * 185.54962 * 30 29 20 47 47 H 1.09008 * 109.38393 * 65.51905 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1616 2.4117 7 6 2.6389 -0.7144 3.5631 8 6 2.9739 -2.0745 3.5102 9 7 3.4130 -2.7116 4.5697 10 6 3.5626 -2.1030 5.7420 11 7 3.9909 -2.5258 6.9687 12 1 4.2774 -3.4274 7.1828 13 7 3.9500 -1.4553 7.8670 14 6 3.5188 -0.3832 7.2672 15 6 3.2468 -0.7348 5.8768 16 6 2.7809 -0.0253 4.7678 17 6 2.0401 -0.7212 -1.2492 18 6 1.6350 0.0692 -2.4954 19 6 2.1769 -0.6374 -3.7420 20 7 1.7131 -2.0314 -3.7345 21 6 1.0528 -2.5529 -4.8149 22 1 0.4817 -1.9047 -5.4631 23 6 1.1177 -3.9144 -5.0771 24 7 2.1391 -4.6207 -4.6411 25 14 -0.2488 -4.7459 -6.0420 26 1 -0.3527 -4.1261 -7.3874 27 1 0.0555 -6.1923 -6.1849 28 1 -1.5359 -4.5804 -5.3201 29 6 1.9657 -2.8537 -2.5433 30 6 1.4311 -2.1238 -1.3125 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6316 1.1527 35 1 2.8683 -2.6092 2.5778 36 1 3.3865 0.5898 7.7168 37 1 2.5351 1.0239 4.8413 38 1 3.1264 -0.7989 -1.2056 39 1 2.0497 1.0757 -2.4386 40 1 0.5480 0.1264 -2.5534 41 1 3.2667 -0.6148 -3.7301 42 1 1.8087 -0.1345 -4.6362 43 1 2.8883 -4.1770 -4.2135 44 1 1.4582 -3.8127 -2.6469 45 1 3.0378 -3.0155 -2.4317 46 1 1.7006 -2.6784 -0.4136 47 1 0.3459 -2.0466 -1.3806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997168963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:03 Heat of formation + Delta-G solvation = 77.904777 kcal Electronic energy + Delta-G solvation = -29475.310288 eV Core-core repulsion = 25466.757421 eV Total energy + Delta-G solvation = -4008.552867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07502 -40.22659 -38.59343 -37.85772 -35.56072 -33.63040 -33.23470 -31.48107 -31.15056 -30.32249 -30.03122 -28.63809 -25.51379 -24.66846 -24.33147 -23.18682 -22.49372 -22.29947 -20.96796 -20.41428 -18.91684 -18.81601 -18.14049 -17.34719 -16.98103 -16.37217 -15.91275 -15.63186 -15.03391 -14.80981 -14.48199 -14.46352 -14.24446 -13.86947 -13.80967 -13.54555 -13.48748 -13.37005 -13.12808 -12.82851 -12.70095 -12.19178 -11.83944 -11.71967 -11.60353 -11.26315 -11.16041 -10.92600 -10.68723 -10.49064 -10.33950 -10.27275 -10.05284 -9.95815 -9.78055 -9.70666 -9.62161 -9.27703 -9.17923 -8.91353 -8.38036 -6.89172 -6.07157 -3.23629 0.25817 0.38010 1.85662 1.90673 2.60859 2.97244 3.44698 3.49001 3.51932 3.69977 3.73063 3.85254 4.06149 4.33429 4.40872 4.59010 4.69970 4.81450 4.93116 5.05760 5.13885 5.19017 5.30409 5.47551 5.52750 5.55714 5.60814 5.63490 5.76119 5.90572 5.92135 5.97822 6.05868 6.15290 6.23399 6.33751 6.37474 6.49761 6.52974 6.55868 6.61059 6.71143 6.78137 6.82534 7.06223 7.18080 7.35523 7.39601 8.00058 8.05549 8.57264 9.11602 9.84294 10.29079 11.21003 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002232 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.603079 B =12542.852947 C =13541.097645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.086 0.914 4 N -0.716 5.716 5 C 0.570 3.430 6 O -0.541 6.541 7 C -0.231 4.231 8 C 0.208 3.792 9 N -0.504 5.504 10 C 0.332 3.668 11 N -0.491 5.491 12 H 0.446 0.554 13 N -0.236 5.236 14 C 0.100 3.900 15 C -0.239 4.239 16 C 0.073 3.927 17 C -0.086 4.086 18 C -0.125 4.125 19 C 0.148 3.852 20 N -0.598 5.598 21 C -0.347 4.347 22 H 0.055 0.945 23 C -0.025 4.025 24 N -0.917 5.917 25 Si 1.063 2.937 26 H -0.293 1.293 27 H -0.286 1.286 28 H -0.294 1.294 29 C 0.150 3.850 30 C -0.132 4.132 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.171 0.829 36 H 0.207 0.793 37 H 0.156 0.844 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.055 0.945 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.014 0.986 46 H 0.045 0.955 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 8.361 21.772 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.104 0.896 4 N -0.367 5.367 5 C 0.356 3.644 6 O -0.419 6.419 7 C -0.238 4.238 8 C 0.037 3.963 9 N -0.218 5.218 10 C 0.091 3.909 11 N -0.208 5.208 12 H 0.292 0.708 13 N -0.049 5.049 14 C -0.099 4.099 15 C -0.249 4.249 16 C 0.044 3.956 17 C -0.106 4.106 18 C -0.165 4.165 19 C 0.021 3.979 20 N -0.322 5.322 21 C -0.477 4.477 22 H 0.073 0.927 23 C -0.227 4.227 24 N -0.557 5.557 25 Si 0.892 3.108 26 H -0.220 1.220 27 H -0.211 1.211 28 H -0.221 1.221 29 C 0.024 3.976 30 C -0.171 4.171 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.187 0.813 36 H 0.223 0.777 37 H 0.174 0.826 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.838 6.316 22.359 23.306 hybrid contribution 0.396 1.661 -0.054 1.708 sum 2.234 7.976 22.305 23.793 Atomic orbital electron populations 1.22238 0.95132 1.02649 1.02128 1.21139 0.94389 0.96894 0.83198 0.89618 1.46112 1.66727 1.14180 1.09698 1.17789 0.77592 0.86363 0.82624 1.90776 1.50817 1.15373 1.84917 1.20727 1.11254 0.96002 0.95826 1.22935 0.87748 0.90256 0.95334 1.66737 1.19068 1.38881 0.97115 1.19214 0.93538 0.90303 0.87851 1.45867 1.58894 1.12172 1.03908 0.70754 1.76749 1.18520 0.94635 1.15032 1.25191 0.96203 0.98285 0.90239 1.20485 1.13098 0.95144 0.96177 1.21186 0.85971 1.00145 0.88294 1.21329 1.00037 0.96190 0.92997 1.22050 1.01493 0.97482 0.95485 1.20885 0.95452 0.86564 0.94971 1.44091 1.66914 1.07782 1.13445 1.19968 1.26497 0.94704 1.06488 0.92702 1.25817 1.01366 0.94676 1.00822 1.70788 1.05809 1.39239 1.39845 0.83556 0.75367 0.76264 0.75563 1.22014 1.21134 1.22088 1.20848 0.96739 0.95350 0.84668 1.22132 1.01239 0.94764 0.98989 0.91821 0.92793 0.91159 0.76506 0.81260 0.77651 0.82632 0.91311 0.92862 0.91650 0.96743 0.92631 0.92069 0.90253 0.96779 0.93668 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.75 37.16 0.33 -1.76 16 2 C 0.15 1.89 2.35 -67.93 -0.16 1.73 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.72 -8.03 4.97 -54.80 -0.27 -8.30 16 5 C 0.57 6.84 7.74 -12.40 -0.10 6.74 16 6 O -0.54 -8.08 16.06 5.30 0.09 -8.00 16 7 C -0.23 -2.32 5.89 -104.84 -0.62 -2.94 16 8 C 0.21 1.96 10.69 -17.10 -0.18 1.78 16 9 N -0.50 -5.33 10.37 -12.03 -0.12 -5.46 16 10 C 0.33 3.34 8.47 -156.09 -1.32 2.02 16 11 N -0.49 -4.17 7.33 31.15 0.23 -3.94 16 12 H 0.45 2.73 8.96 -182.82 -1.64 1.10 16 13 N -0.24 -1.99 12.54 31.87 0.40 -1.59 16 14 C 0.10 0.69 12.30 -15.15 -0.19 0.50 16 15 C -0.24 -2.13 6.36 -105.20 -0.67 -2.80 16 16 C 0.07 0.66 9.76 -38.58 -0.38 0.28 16 17 C -0.09 -1.26 2.08 -90.58 -0.19 -1.45 16 18 C -0.13 -2.00 5.08 -26.61 -0.14 -2.14 16 19 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 20 N -0.60 -14.31 2.86 -172.58 -0.49 -14.81 16 21 C -0.35 -9.44 9.49 -15.06 -0.14 -9.58 16 22 H 0.06 1.50 7.94 -52.49 -0.42 1.09 16 23 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 24 N -0.92 -26.84 12.40 55.49 0.69 -26.15 16 25 Si 1.06 24.78 29.99 -169.99 -5.10 19.69 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.15 3.27 4.66 -3.93 -0.02 3.25 16 30 C -0.13 -2.16 4.70 -26.84 -0.13 -2.29 16 31 H 0.06 0.82 6.38 -51.93 -0.33 0.49 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.90 6.60 -51.93 -0.34 0.55 16 34 H 0.40 3.79 5.19 -40.82 -0.21 3.57 16 35 H 0.17 1.21 6.39 -52.49 -0.34 0.87 16 36 H 0.21 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.16 1.20 7.72 -52.49 -0.41 0.79 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.08 6.64 -51.93 -0.34 0.73 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 43 H 0.27 7.90 6.71 -40.82 -0.27 7.63 16 44 H 0.08 1.98 6.30 -51.93 -0.33 1.65 16 45 H 0.01 0.32 7.87 -51.93 -0.41 -0.09 16 46 H 0.04 0.62 6.74 -51.93 -0.35 0.27 16 47 H 0.07 1.16 6.43 -51.92 -0.33 0.82 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -33.64 373.36 -10.40 -44.03 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.43 Total: 3.39 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.00 Total: -4.49 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.43 Total: -60.25 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.10 Total: 19.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.64 -10.40 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997168963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.939 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds