Wall clock time and date at job start Wed Apr 1 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 N 1.46501 * 109.47464 * 119.99457 * 2 1 3 5 5 C 1.34779 * 120.00238 * 275.00738 * 4 2 1 6 6 O 1.21574 * 120.00012 * 359.97438 * 5 4 2 7 7 C 1.47683 * 119.99675 * 179.97438 * 5 4 2 8 8 C 1.40176 * 120.41449 * 359.97438 * 7 5 4 9 9 N 1.31190 * 121.37674 * 179.97438 * 8 7 5 10 10 C 1.32931 * 121.84203 * 359.97438 * 9 8 7 11 11 N 1.36634 * 133.26578 * 180.02562 * 10 9 8 12 12 H 0.97001 * 125.33866 * 359.95695 * 11 10 9 13 13 N 1.39802 * 109.31583 * 180.02562 * 11 10 9 14 14 C 1.30197 * 110.13207 * 359.97438 * 13 11 10 15 15 C 1.41064 * 120.20469 * 0.02562 * 10 9 8 16 16 C 1.39511 * 120.40363 * 179.71698 * 7 5 4 17 17 C 1.52996 * 109.47566 * 239.99911 * 2 1 3 18 18 C 1.53042 * 109.45963 * 64.99316 * 17 2 1 19 19 C 1.53192 * 109.31334 * 178.61645 * 18 17 2 20 20 N 1.46923 * 108.77651 * 54.63913 * 19 18 17 21 21 C 1.36935 * 120.63374 * 126.36527 * 20 19 18 22 22 H 1.07995 * 119.99873 * 332.38583 * 21 20 19 23 23 C 1.38811 * 119.99806 * 152.37964 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46933 * 118.73785 * 306.64582 * 20 19 18 30 30 C 1.52757 * 109.00863 * 53.30252 * 29 20 19 31 31 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47349 * 299.99760 * 1 2 3 33 33 H 1.08994 * 109.47211 * 60.00586 * 1 2 3 34 34 H 0.96999 * 119.99938 * 94.99798 * 4 2 1 35 35 H 1.07997 * 119.31376 * 359.97438 * 8 7 5 36 36 H 1.08007 * 126.20395 * 180.02562 * 14 13 11 37 37 H 1.08002 * 121.02915 * 0.02562 * 16 7 5 38 38 H 1.08995 * 109.46640 * 184.97141 * 17 2 1 39 39 H 1.09002 * 109.49413 * 58.66694 * 18 17 2 40 40 H 1.09002 * 109.53037 * 298.58630 * 18 17 2 41 41 H 1.09006 * 109.58761 * 294.85230 * 19 18 17 42 42 H 1.09001 * 109.58712 * 174.42799 * 19 18 17 43 43 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 44 44 H 1.08994 * 109.58881 * 173.14244 * 29 20 19 45 45 H 1.09000 * 109.58205 * 293.56720 * 29 20 19 46 46 H 1.09003 * 109.56516 * 185.54962 * 30 29 20 47 47 H 1.09008 * 109.38393 * 65.51905 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1616 2.4117 7 6 2.6389 -0.7144 3.5631 8 6 2.9739 -2.0745 3.5102 9 7 3.4130 -2.7116 4.5697 10 6 3.5626 -2.1030 5.7420 11 7 3.9909 -2.5258 6.9687 12 1 4.2774 -3.4274 7.1828 13 7 3.9500 -1.4553 7.8670 14 6 3.5188 -0.3832 7.2672 15 6 3.2468 -0.7348 5.8768 16 6 2.7809 -0.0253 4.7678 17 6 2.0401 -0.7212 -1.2492 18 6 1.6350 0.0692 -2.4954 19 6 2.1769 -0.6374 -3.7420 20 7 1.7131 -2.0314 -3.7345 21 6 1.0528 -2.5529 -4.8149 22 1 0.4817 -1.9047 -5.4631 23 6 1.1177 -3.9144 -5.0771 24 7 2.1391 -4.6207 -4.6411 25 14 -0.2488 -4.7459 -6.0420 26 1 -0.3527 -4.1261 -7.3874 27 1 0.0555 -6.1923 -6.1849 28 1 -1.5359 -4.5804 -5.3201 29 6 1.9657 -2.8537 -2.5433 30 6 1.4311 -2.1238 -1.3125 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6316 1.1527 35 1 2.8683 -2.6092 2.5778 36 1 3.3865 0.5898 7.7168 37 1 2.5351 1.0239 4.8413 38 1 3.1264 -0.7989 -1.2056 39 1 2.0497 1.0757 -2.4386 40 1 0.5480 0.1264 -2.5534 41 1 3.2667 -0.6148 -3.7301 42 1 1.8087 -0.1345 -4.6362 43 1 2.8883 -4.1770 -4.2135 44 1 1.4582 -3.8127 -2.6469 45 1 3.0378 -3.0155 -2.4317 46 1 1.7006 -2.6784 -0.4136 47 1 0.3459 -2.0466 -1.3806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997168963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:02 Heat of formation + Delta-G solvation = 56.059744 kcal Electronic energy + Delta-G solvation = -29476.257560 eV Core-core repulsion = 25466.757421 eV Total energy + Delta-G solvation = -4009.500139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.73292 -41.19548 -39.76490 -38.78391 -36.98450 -34.71381 -34.32202 -32.84268 -31.79972 -31.73536 -31.20266 -29.92387 -27.02990 -25.73602 -25.05052 -24.56550 -23.91458 -22.96469 -22.25869 -21.48853 -20.27575 -19.60876 -19.31201 -18.85455 -17.79414 -17.14820 -16.66520 -16.51762 -16.25002 -16.06146 -15.80474 -15.70027 -15.37770 -15.24594 -15.01946 -14.76659 -14.57675 -14.30502 -14.19477 -14.10269 -13.69427 -13.53225 -13.37982 -12.91095 -12.62368 -12.59310 -12.40585 -12.34228 -11.90467 -11.89086 -11.86457 -11.62872 -11.56702 -11.36891 -11.18469 -10.95094 -10.60532 -10.43440 -10.29269 -10.15767 -9.63436 -8.88189 -8.19935 -5.35321 -0.38787 -0.35839 1.25731 1.33238 1.60193 1.66854 1.76250 1.85677 2.06500 2.68300 2.68749 3.12869 3.22733 3.24900 3.45535 3.58682 3.61177 3.70616 3.78201 3.85408 4.00547 4.02587 4.22655 4.35694 4.41493 4.49196 4.55028 4.58705 4.62298 4.73748 4.83311 4.86737 4.94982 5.01457 5.06118 5.12424 5.17147 5.19847 5.29089 5.30976 5.31973 5.33759 5.50562 5.67551 5.88297 5.94643 6.17301 6.44107 6.48499 6.70607 7.11872 7.14913 7.83563 8.27519 9.04292 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002232 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.603079 B =12542.852947 C =13541.097645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.084 0.916 4 N -0.710 5.710 5 C 0.576 3.424 6 O -0.571 6.571 7 C -0.242 4.242 8 C 0.209 3.791 9 N -0.523 5.523 10 C 0.315 3.685 11 N -0.491 5.491 12 H 0.453 0.547 13 N -0.256 5.256 14 C 0.115 3.885 15 C -0.248 4.248 16 C 0.080 3.920 17 C -0.076 4.076 18 C -0.115 4.115 19 C 0.142 3.858 20 N -0.618 5.618 21 C -0.351 4.351 22 H 0.048 0.952 23 C -0.076 4.076 24 N -0.943 5.943 25 Si 1.111 2.889 26 H -0.278 1.278 27 H -0.293 1.293 28 H -0.280 1.280 29 C 0.154 3.846 30 C -0.119 4.119 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.408 0.592 35 H 0.189 0.811 36 H 0.247 0.753 37 H 0.169 0.831 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.013 0.987 42 H 0.047 0.953 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.003 0.997 46 H 0.076 0.924 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 9.633 23.394 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.102 0.898 4 N -0.362 5.362 5 C 0.363 3.637 6 O -0.452 6.452 7 C -0.249 4.249 8 C 0.039 3.961 9 N -0.238 5.238 10 C 0.074 3.926 11 N -0.209 5.209 12 H 0.300 0.700 13 N -0.069 5.069 14 C -0.084 4.084 15 C -0.258 4.258 16 C 0.051 3.949 17 C -0.095 4.095 18 C -0.155 4.155 19 C 0.017 3.983 20 N -0.343 5.343 21 C -0.481 4.481 22 H 0.066 0.934 23 C -0.273 4.273 24 N -0.585 5.585 25 Si 0.936 3.064 26 H -0.204 1.204 27 H -0.219 1.219 28 H -0.206 1.206 29 C 0.028 3.972 30 C -0.157 4.157 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.246 0.754 35 H 0.205 0.795 36 H 0.263 0.737 37 H 0.187 0.813 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.094 0.906 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.293 7.597 24.012 25.218 hybrid contribution 0.631 1.318 -0.536 1.557 sum 1.924 8.915 23.475 25.185 Atomic orbital electron populations 1.22192 0.94897 1.02527 1.02098 1.20878 0.94370 0.96488 0.82725 0.89830 1.45995 1.66452 1.14571 1.09156 1.17952 0.76821 0.85914 0.82980 1.90761 1.52323 1.16704 1.85404 1.20584 1.12602 0.96292 0.95464 1.23205 0.86988 0.90161 0.95768 1.66762 1.19984 1.39449 0.97626 1.19514 0.93778 0.91168 0.88135 1.45965 1.58671 1.12734 1.03536 0.69995 1.76763 1.19646 0.95078 1.15375 1.25881 0.94115 0.99300 0.89090 1.20687 1.13231 0.94735 0.97145 1.21360 0.84884 1.00693 0.87936 1.21189 1.00006 0.94858 0.93415 1.21913 1.01246 0.98452 0.93842 1.21039 0.95383 0.84959 0.96944 1.44355 1.67159 1.09276 1.13468 1.20202 1.25953 0.94872 1.07098 0.93439 1.27084 1.02616 0.95771 1.01810 1.70903 1.06417 1.39281 1.41944 0.82901 0.73387 0.74866 0.75245 1.20423 1.21940 1.20600 1.20749 0.95764 0.94333 0.86311 1.21956 1.00642 0.95691 0.97452 0.91958 0.92866 0.91165 0.75425 0.79483 0.73698 0.81345 0.91095 0.90130 0.91883 0.96940 0.93449 0.93586 0.93906 0.97940 0.90558 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.75 71.98 0.63 -3.08 16 2 C 0.16 3.70 2.35 44.99 0.11 3.81 16 3 H 0.08 2.07 7.58 -2.39 -0.02 2.06 16 4 N -0.71 -14.30 4.97 -445.56 -2.21 -16.51 16 5 C 0.58 12.69 7.74 86.74 0.67 13.36 16 6 O -0.57 -16.06 16.06 -3.95 -0.06 -16.13 16 7 C -0.24 -4.44 5.89 -20.00 -0.12 -4.56 16 8 C 0.21 3.62 10.69 85.26 0.91 4.53 16 9 N -0.52 -10.52 10.37 -191.97 -1.99 -12.51 16 10 C 0.32 5.97 8.47 134.17 1.14 7.10 16 11 N -0.49 -7.82 7.33 -55.36 -0.41 -8.23 16 12 H 0.45 5.30 8.96 -213.51 -1.91 3.38 16 13 N -0.26 -3.87 12.54 -53.08 -0.67 -4.53 16 14 C 0.12 1.28 12.30 86.94 1.07 2.35 16 15 C -0.25 -3.94 6.36 -20.24 -0.13 -4.07 16 16 C 0.08 1.29 9.76 22.92 0.22 1.51 16 17 C -0.08 -2.05 2.08 -10.77 -0.02 -2.07 16 18 C -0.12 -3.47 5.08 30.67 0.16 -3.31 16 19 C 0.14 5.65 6.52 86.36 0.56 6.21 16 20 N -0.62 -29.88 2.86 -699.93 -2.00 -31.87 16 21 C -0.35 -19.35 9.49 84.03 0.80 -18.55 16 22 H 0.05 2.63 7.94 -2.91 -0.02 2.61 16 23 C -0.08 -4.30 4.69 84.86 0.40 -3.90 16 24 N -0.94 -56.69 12.40 21.65 0.27 -56.42 16 25 Si 1.11 50.43 29.99 68.60 2.06 52.48 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.15 6.79 4.66 86.22 0.40 7.19 16 30 C -0.12 -3.73 4.70 30.53 0.14 -3.58 16 31 H 0.06 1.47 6.38 -2.38 -0.02 1.45 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.64 6.60 -2.39 -0.02 1.62 16 34 H 0.41 6.70 5.19 -92.71 -0.48 6.22 16 35 H 0.19 2.30 6.39 -2.91 -0.02 2.29 16 36 H 0.25 0.38 8.06 -2.91 -0.02 0.35 16 37 H 0.17 2.22 7.72 -2.91 -0.02 2.19 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.96 6.64 -2.39 -0.02 1.94 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 43 H 0.25 15.53 6.71 -92.70 -0.62 14.90 16 44 H 0.04 2.19 6.30 -2.39 -0.02 2.17 16 45 H 0.00 0.12 7.87 -2.39 -0.02 0.10 16 46 H 0.08 1.92 6.74 -2.39 -0.02 1.90 16 47 H 0.06 2.03 6.43 -2.38 -0.02 2.01 16 Total: -1.00 -73.99 373.36 0.72 -73.28 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -1.21 Total: 17.51 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.94 Total: 2.93 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -7.01 Total: -130.08 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.06 Total: -16.13 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.06 Total: 52.48 kcal Total: -73.99 0.72 -73.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997168963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.337 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds