Wall clock time and date at job start Wed Apr 1 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 N 1.46499 * 109.46808 * 120.00049 * 2 1 3 5 5 C 1.34776 * 119.99991 * 274.99512 * 4 2 1 6 6 O 1.21589 * 119.99648 * 0.02562 * 5 4 2 7 7 C 1.47528 * 119.99928 * 180.02562 * 5 4 2 8 8 C 1.39411 * 120.75810 * 359.97438 * 7 5 4 9 9 N 1.31917 * 121.01883 * 180.02562 * 8 7 5 10 10 C 1.31793 * 122.60234 * 359.97438 * 9 8 7 11 11 C 1.39441 * 120.62942 * 0.02562 * 10 9 8 12 12 N 1.35709 * 134.43182 * 180.02562 * 11 10 9 13 13 C 1.30131 * 109.49885 * 179.76112 * 12 11 10 14 14 N 1.36259 * 110.05958 * 0.39010 * 13 12 11 15 15 H 0.97001 * 126.29912 * 179.87868 * 14 13 12 16 16 C 1.36923 * 107.40513 * 359.61513 * 14 13 12 17 17 C 1.53003 * 109.46889 * 239.99980 * 2 1 3 18 18 H 1.08994 * 109.49571 * 300.06595 * 17 2 1 19 19 C 1.53046 * 109.49689 * 60.16451 * 17 2 1 20 20 C 1.53045 * 109.53706 * 181.31581 * 19 17 2 21 21 C 1.53199 * 109.30867 * 298.63351 * 20 19 17 22 22 N 1.46925 * 108.77631 * 54.63857 * 21 20 19 23 23 C 1.36932 * 120.63143 * 126.36966 * 22 21 20 24 24 H 1.08003 * 120.00060 * 331.84512 * 23 22 21 25 25 C 1.38818 * 120.00099 * 151.84703 * 23 22 21 26 26 N 1.31616 * 119.99696 * 343.06650 * 25 23 22 27 27 Si 1.86792 * 120.00151 * 163.06753 * 25 23 22 28 28 H 1.48502 * 109.47160 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47482 * 119.99777 * 27 25 23 30 30 H 1.48503 * 109.47087 * 239.99928 * 27 25 23 31 31 C 1.46925 * 118.73766 * 306.38601 * 22 21 20 32 32 H 1.08997 * 109.47127 * 300.00040 * 1 2 3 33 33 H 1.09007 * 109.47000 * 60.00001 * 1 2 3 34 34 H 1.08993 * 109.46989 * 179.97438 * 1 2 3 35 35 H 0.97002 * 119.99670 * 95.00604 * 4 2 1 36 36 H 1.07999 * 119.48805 * 0.02562 * 8 7 5 37 37 H 1.07990 * 119.68574 * 179.97438 * 10 9 8 38 38 H 1.08001 * 124.96948 * 180.23383 * 13 12 11 39 39 H 1.08997 * 109.45567 * 301.33205 * 19 17 2 40 40 H 1.08997 * 109.45910 * 61.29187 * 19 17 2 41 41 H 1.08994 * 109.49871 * 178.68111 * 20 19 17 42 42 H 1.08999 * 109.52418 * 58.59740 * 20 19 17 43 43 H 1.08994 * 109.58698 * 294.84738 * 21 20 19 44 44 H 1.08997 * 109.69974 * 174.49430 * 21 20 19 45 45 H 0.97001 * 120.00052 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.58645 * 293.82612 * 31 22 21 47 47 H 1.09001 * 109.58936 * 173.39568 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1614 2.4117 7 6 2.6393 -0.7136 3.5616 8 6 2.9753 -2.0659 3.5168 9 7 3.4154 -2.6929 4.5908 10 6 3.5634 -2.0909 5.7538 11 6 3.2535 -0.7391 5.8986 12 7 3.2968 0.1402 6.9314 13 6 2.8954 1.3090 6.5239 14 7 2.5600 1.2541 5.2043 15 1 2.2307 1.9896 4.6644 16 6 2.7790 -0.0289 4.7791 17 6 2.0400 -0.7213 -1.2493 18 1 1.6759 -1.7486 -1.2503 19 6 1.5335 0.0021 -2.4993 20 6 2.0159 -0.7374 -3.7493 21 6 3.5476 -0.7380 -3.7782 22 7 4.0442 -1.3005 -2.5151 23 6 4.9301 -2.3447 -2.5169 24 1 4.9348 -3.0474 -3.3370 25 6 5.8219 -2.5001 -1.4645 26 7 6.0563 -1.4958 -0.6468 27 14 6.6894 -4.1346 -1.2090 28 1 6.2555 -5.0942 -2.2560 29 1 8.1582 -3.9347 -1.2982 30 1 6.3437 -4.6744 0.1305 31 6 3.5720 -0.7216 -1.2499 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2491 -1.6318 1.1525 36 1 2.8736 -2.6085 2.5886 37 1 3.9272 -2.6501 6.6030 38 1 2.8344 2.1927 7.1418 39 1 0.4439 0.0253 -2.4889 40 1 1.9182 1.0219 -2.5095 41 1 1.6354 -0.2352 -4.6387 42 1 1.6521 -1.7647 -3.7280 43 1 3.9113 0.2833 -3.8914 44 1 3.8991 -1.3456 -4.6121 45 1 6.6798 -1.6042 0.0883 46 1 3.9377 0.3010 -1.1570 47 1 3.9375 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025422575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:21 Heat of formation + Delta-G solvation = 59.250242 kcal Electronic energy + Delta-G solvation = -30633.068713 eV Core-core repulsion = 26623.706924 eV Total energy + Delta-G solvation = -4009.361789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57140 -39.88649 -38.50178 -37.82185 -35.22615 -33.46223 -33.13996 -31.89541 -30.89806 -30.06982 -29.67293 -28.69885 -25.38824 -24.94081 -23.49411 -23.17919 -22.28586 -22.01496 -20.68901 -20.32777 -19.19765 -18.64557 -17.75901 -17.28819 -16.78407 -15.94944 -15.76256 -15.40544 -14.97956 -14.95235 -14.70235 -14.24285 -14.14913 -13.80556 -13.67116 -13.35977 -13.23562 -13.08000 -12.72091 -12.65271 -12.50493 -12.23384 -11.98653 -11.49295 -11.07756 -11.03637 -10.94357 -10.73592 -10.58734 -10.47239 -10.41344 -10.21729 -10.14669 -9.93252 -9.67626 -9.54450 -9.42045 -9.26001 -8.88520 -8.52758 -8.49437 -6.69752 -5.81995 -3.25155 0.26799 1.24191 2.32308 2.68093 3.03614 3.23789 3.35329 3.44586 3.45864 3.80744 3.89705 4.22967 4.37433 4.46468 4.70822 4.84327 4.93531 5.02307 5.08564 5.27767 5.42231 5.44103 5.50454 5.52637 5.56128 5.70477 5.76148 5.80126 5.99307 6.02839 6.07959 6.12244 6.25747 6.26990 6.35292 6.38959 6.46021 6.60994 6.66351 6.78121 6.83652 6.98096 7.03664 7.28231 7.42125 7.58981 7.62186 7.76668 7.81473 8.25613 8.40876 9.17793 9.81027 10.38332 11.25569 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.003922 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.167976 B = 7137.854889 C = 9083.478868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.703 5.703 5 C 0.572 3.428 6 O -0.558 6.558 7 C -0.175 4.175 8 C 0.147 3.853 9 N -0.487 5.487 10 C 0.198 3.802 11 C -0.021 4.021 12 N -0.479 5.479 13 C 0.261 3.739 14 N -0.578 5.578 15 H 0.437 0.563 16 C 0.131 3.869 17 C -0.122 4.122 18 H 0.069 0.931 19 C -0.101 4.101 20 C -0.133 4.133 21 C 0.143 3.857 22 N -0.592 5.592 23 C -0.254 4.254 24 H 0.066 0.934 25 C 0.004 3.996 26 N -0.900 5.900 27 Si 0.897 3.103 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.286 1.286 31 C 0.181 3.819 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.402 0.598 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.223 0.777 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.016 0.984 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 4.404 9.541 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.352 5.352 5 C 0.358 3.642 6 O -0.438 6.438 7 C -0.184 4.184 8 C -0.005 4.005 9 N -0.196 5.196 10 C 0.032 3.968 11 C -0.142 4.142 12 N -0.199 5.199 13 C -0.027 4.027 14 N -0.189 5.189 15 H 0.279 0.721 16 C 0.009 3.991 17 C -0.143 4.143 18 H 0.088 0.912 19 C -0.139 4.139 20 C -0.172 4.172 21 C 0.016 3.984 22 N -0.314 5.314 23 C -0.383 4.383 24 H 0.083 0.917 25 C -0.194 4.194 26 N -0.544 5.544 27 Si 0.727 3.273 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.213 1.213 31 C 0.054 3.946 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.239 0.761 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.836 4.091 10.361 15.541 hybrid contribution 0.090 0.364 -0.833 0.914 sum -10.746 4.455 9.528 15.036 Atomic orbital electron populations 1.22212 0.95814 1.01886 1.01999 1.21045 0.93100 0.97575 0.83633 0.89610 1.45920 1.65705 1.14298 1.09258 1.17800 0.77293 0.86227 0.82845 1.90665 1.52204 1.15573 1.85367 1.19993 1.10549 0.95531 0.92283 1.22858 0.91010 0.89446 0.97193 1.67722 1.14878 1.38247 0.98765 1.22343 0.91060 0.88167 0.95257 1.20176 1.07412 0.96618 0.89984 1.70466 1.21131 0.99562 1.28698 1.25613 0.96310 0.98442 0.82368 1.43196 1.53988 1.10180 1.11543 0.72102 1.18675 0.99271 0.86069 0.95085 1.22186 1.01456 0.98741 0.91897 0.91243 1.21434 0.98781 0.98995 0.94709 1.21993 0.99093 0.99864 0.96269 1.20931 0.91024 0.96340 0.90077 1.44037 1.49977 1.37990 0.99419 1.19222 1.10358 1.01570 1.07163 0.91677 1.25031 0.97023 0.97321 1.00057 1.70044 1.36803 1.28780 1.18784 0.86310 0.79252 0.83852 0.77925 1.20260 1.21754 1.21275 1.20766 0.86159 0.97187 0.90445 0.92805 0.91340 0.92620 0.76156 0.81507 0.81321 0.76094 0.93080 0.92624 0.93126 0.92407 0.96625 0.92929 0.93702 0.96634 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.14 37.16 0.34 -1.72 16 2 C 0.15 2.31 2.16 -67.93 -0.15 2.16 16 3 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 4 N -0.70 -10.60 4.43 -54.85 -0.24 -10.84 16 5 C 0.57 9.09 7.74 -12.47 -0.10 8.99 16 6 O -0.56 -9.70 15.18 5.29 0.08 -9.62 16 7 C -0.17 -2.60 5.89 -104.86 -0.62 -3.21 16 8 C 0.15 2.09 10.71 -17.08 -0.18 1.91 16 9 N -0.49 -6.98 10.30 -12.65 -0.13 -7.11 16 10 C 0.20 2.57 11.25 -17.12 -0.19 2.37 16 11 C -0.02 -0.29 7.27 -84.73 -0.62 -0.91 16 12 N -0.48 -5.98 11.28 -12.00 -0.14 -6.11 16 13 C 0.26 2.44 12.97 -89.56 -1.16 1.27 16 14 N -0.58 -6.51 6.02 -11.51 -0.07 -6.58 16 15 H 0.44 4.46 7.92 -40.82 -0.32 4.14 16 16 C 0.13 1.85 6.93 -83.81 -0.58 1.27 16 17 C -0.12 -2.08 1.97 -90.49 -0.18 -2.25 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.10 -1.57 4.86 -26.68 -0.13 -1.70 16 20 C -0.13 -2.18 6.08 -26.61 -0.16 -2.35 16 21 C 0.14 2.91 6.52 -3.71 -0.02 2.88 16 22 N -0.59 -14.24 2.99 -172.32 -0.52 -14.76 16 23 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 24 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 25 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 26 N -0.90 -25.34 11.20 55.49 0.62 -24.72 16 27 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 C 0.18 4.01 4.34 -3.71 -0.02 4.00 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.80 6.41 -51.93 -0.33 0.47 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 5.69 6.49 -40.82 -0.26 5.43 16 36 H 0.17 2.11 6.42 -52.49 -0.34 1.77 16 37 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 2.15 5.56 -51.93 -0.29 1.86 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -32.93 376.74 -10.20 -43.13 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.46 Total: 8.91 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -4.00 Total: 5.87 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -0.47 Total: -70.12 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.93 -10.20 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025422575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.379 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds