Wall clock time and date at job start Wed Apr 1 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47093 * 2 1 4 4 N 1.46497 * 109.47694 * 239.99557 * 2 1 3 5 5 C 1.34778 * 119.99913 * 84.99555 * 4 2 1 6 6 O 1.21563 * 120.00177 * 0.02562 * 5 4 2 7 7 C 1.47763 * 120.00042 * 180.02562 * 5 4 2 8 8 C 1.39635 * 121.07207 * 359.97438 * 7 5 4 9 9 C 1.38339 * 119.37411 * 180.02562 * 8 7 5 10 10 N 1.31724 * 121.55113 * 359.97438 * 9 8 7 11 11 C 1.32113 * 121.94439 * 0.02562 * 10 9 8 12 12 N 1.37947 * 133.81067 * 180.02562 * 11 10 9 13 13 H 0.96998 * 126.35426 * 0.02562 * 12 11 10 14 14 C 1.35994 * 107.28741 * 179.29578 * 12 11 10 15 15 N 1.30283 * 110.04933 * 0.61452 * 14 12 11 16 16 C 1.34651 * 109.67172 * 359.47744 * 15 14 12 17 17 C 1.53005 * 109.47269 * 119.99243 * 2 1 3 18 18 H 1.08998 * 109.52602 * 180.02562 * 17 2 1 19 19 C 1.53039 * 109.49605 * 300.16549 * 17 2 1 20 20 C 1.53358 * 109.60526 * 181.31987 * 19 17 2 21 21 C 1.53190 * 109.15073 * 298.71334 * 20 19 17 22 22 N 1.46934 * 108.89394 * 54.57373 * 21 20 19 23 23 C 1.36935 * 120.62776 * 126.33972 * 22 21 20 24 24 H 1.08003 * 120.00334 * 331.82288 * 23 22 21 25 25 C 1.38816 * 120.00109 * 151.82327 * 23 22 21 26 26 N 1.31624 * 119.99356 * 343.07479 * 25 23 22 27 27 Si 1.86793 * 120.00395 * 163.07501 * 25 23 22 28 28 H 1.48500 * 109.47341 * 59.99642 * 27 25 23 29 29 H 1.48496 * 109.47062 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46651 * 299.99824 * 27 25 23 31 31 C 1.46927 * 118.73962 * 306.32403 * 22 21 20 32 32 H 1.08995 * 109.46724 * 60.00485 * 1 2 3 33 33 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47191 * 300.00442 * 1 2 3 35 35 H 0.96995 * 120.00177 * 265.00615 * 4 2 1 36 36 H 1.08002 * 120.31455 * 0.02635 * 8 7 5 37 37 H 1.08005 * 119.22611 * 180.02562 * 9 8 7 38 38 H 1.07996 * 124.97573 * 180.11781 * 14 12 11 39 39 H 1.08994 * 109.46381 * 301.33378 * 19 17 2 40 40 H 1.09004 * 109.45867 * 61.31091 * 19 17 2 41 41 H 1.08993 * 109.68345 * 178.74904 * 20 19 17 42 42 H 1.09002 * 109.46954 * 58.54958 * 20 19 17 43 43 H 1.08996 * 109.58641 * 294.72001 * 21 20 19 44 44 H 1.09000 * 109.58862 * 174.43601 * 21 20 19 45 45 H 0.96997 * 119.99488 * 180.02562 * 26 25 23 46 46 H 1.08997 * 109.58430 * 173.39008 * 31 22 21 47 47 H 1.09000 * 109.58086 * 293.67640 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1612 -2.4117 7 6 2.6393 -0.7151 -3.5636 8 6 2.9780 -2.0693 -3.5261 9 6 3.4356 -2.6864 -4.6765 10 7 3.5598 -2.0267 -5.8099 11 6 3.2559 -0.7448 -5.9094 12 7 3.2892 0.1669 -6.9441 13 1 3.5698 -0.0081 -7.8559 14 6 2.8399 1.3526 -6.4524 15 7 2.5479 1.2303 -5.1887 16 6 2.7776 -0.0354 -4.7909 17 6 2.0401 -0.7211 1.2494 18 1 3.1300 -0.7212 1.2505 19 6 1.5269 -0.0024 2.4992 20 6 2.0637 -0.7036 3.7530 21 6 1.5533 -2.1478 3.7784 22 7 1.9180 -2.8037 2.5152 23 6 2.6065 -3.9873 2.5171 24 1 3.2674 -4.2264 3.3373 25 6 2.4551 -4.8801 1.4650 26 7 1.4301 -4.7656 0.6472 27 14 3.7059 -6.2437 1.2096 28 1 3.7447 -7.1118 2.4139 29 1 3.3200 -7.0542 0.0267 30 1 5.0479 -5.6487 0.9850 31 6 1.5297 -2.1655 1.2500 32 1 -0.3632 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 2.2491 -1.6318 -1.1524 36 1 2.8835 -2.6296 -2.6077 37 1 3.6965 -3.7340 -4.6449 38 1 2.7470 2.2644 -7.0238 39 1 1.8681 1.0327 2.4888 40 1 0.4371 -0.0254 2.5096 41 1 1.7170 -0.1796 4.6436 42 1 3.1535 -0.7033 3.7310 43 1 0.4692 -2.1503 3.8916 44 1 2.0089 -2.6818 4.6123 45 1 1.3241 -5.3897 -0.0877 46 1 1.9720 -2.7097 0.4155 47 1 0.4438 -2.1717 1.1560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025431464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:27 Heat of formation + Delta-G solvation = 51.654946 kcal Electronic energy + Delta-G solvation = -30517.124756 eV Core-core repulsion = 26507.433611 eV Total energy + Delta-G solvation = -4009.691145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45806 -41.10493 -39.59887 -39.06287 -36.55247 -34.91660 -34.68986 -33.22352 -32.08020 -31.45479 -30.79745 -29.59663 -27.14609 -26.35684 -25.00327 -24.25227 -23.91302 -23.09476 -22.05312 -21.45136 -20.30630 -19.53628 -18.75989 -18.53598 -18.24932 -17.16180 -16.85211 -16.65248 -16.36543 -15.97626 -15.79836 -15.66403 -15.48746 -15.14425 -14.96545 -14.84654 -14.62719 -14.12572 -13.92668 -13.78903 -13.63924 -13.61809 -13.23474 -12.94515 -12.75203 -12.58793 -12.33719 -12.22525 -12.07729 -11.98097 -11.81950 -11.70193 -11.46952 -11.28003 -11.07541 -11.01251 -10.44676 -10.29259 -10.16889 -9.94665 -9.62831 -8.56845 -7.79271 -5.24295 -0.73445 0.03770 1.53017 1.54250 1.54762 1.61400 1.68784 1.89361 2.05615 2.57614 2.76601 3.09974 3.32474 3.36878 3.52800 3.65498 3.68521 3.92215 4.00150 4.05770 4.17383 4.19725 4.33887 4.36995 4.46482 4.52007 4.62047 4.66645 4.78261 4.78887 4.87472 4.89783 4.93847 5.03806 5.08162 5.19762 5.21731 5.30806 5.43926 5.44287 5.48722 5.55285 5.60448 5.74060 5.84456 6.17306 6.46872 6.48111 6.68913 6.77768 7.14392 7.23792 7.93508 8.46364 9.26216 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003664 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.263566 B = 7639.976459 C = 9706.225426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.079 0.921 4 N -0.708 5.708 5 C 0.553 3.447 6 O -0.548 6.548 7 C -0.066 4.066 8 C -0.137 4.137 9 C 0.133 3.867 10 N -0.471 5.471 11 C 0.217 3.783 12 N -0.572 5.572 13 H 0.448 0.552 14 C 0.303 3.697 15 N -0.525 5.525 16 C 0.029 3.971 17 C -0.109 4.109 18 H 0.058 0.942 19 C -0.100 4.100 20 C -0.123 4.123 21 C 0.137 3.863 22 N -0.611 5.611 23 C -0.268 4.268 24 H 0.058 0.942 25 C -0.037 4.037 26 N -0.925 5.925 27 Si 0.957 3.043 28 H -0.286 1.286 29 H -0.287 1.287 30 H -0.279 1.279 31 C 0.189 3.811 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.406 0.594 36 H 0.158 0.842 37 H 0.207 0.793 38 H 0.281 0.719 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.014 0.986 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.062 0.938 47 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 9.812 -13.193 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.097 0.903 4 N -0.361 5.361 5 C 0.339 3.661 6 O -0.426 6.426 7 C -0.079 4.079 8 C -0.159 4.159 9 C -0.033 4.033 10 N -0.185 5.185 11 C -0.021 4.021 12 N -0.189 5.189 13 H 0.292 0.708 14 C 0.016 3.984 15 N -0.245 5.245 16 C -0.094 4.094 17 C -0.129 4.129 18 H 0.076 0.924 19 C -0.138 4.138 20 C -0.162 4.162 21 C 0.012 3.988 22 N -0.334 5.334 23 C -0.398 4.398 24 H 0.076 0.924 25 C -0.234 4.234 26 N -0.571 5.571 27 Si 0.786 3.214 28 H -0.212 1.212 29 H -0.213 1.213 30 H -0.205 1.205 31 C 0.063 3.937 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.244 0.756 36 H 0.176 0.824 37 H 0.224 0.776 38 H 0.296 0.704 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.953 10.805 -13.523 17.560 hybrid contribution 0.624 -1.755 -0.196 1.873 sum 3.578 9.050 -13.719 16.820 Atomic orbital electron populations 1.22170 0.94917 1.02096 1.02155 1.20917 0.94476 0.96076 0.83092 0.90288 1.46151 1.66069 1.14594 1.09246 1.18241 0.78094 0.86405 0.83342 1.90766 1.50585 1.16194 1.85083 1.19773 1.01749 0.94346 0.92005 1.22477 0.98685 0.92709 1.02078 1.23072 0.94162 1.01003 0.85026 1.66341 1.17152 1.05575 1.29386 1.19227 1.03058 0.90384 0.89454 1.42922 1.55576 1.08175 1.12182 0.70803 1.26812 0.90956 0.90664 0.89937 1.70311 1.24198 1.17694 1.12250 1.19479 1.03438 0.92455 0.94032 1.21924 0.99774 0.97532 0.93692 0.92397 1.21502 1.00626 0.98542 0.93140 1.21943 1.00218 0.96054 0.97985 1.21083 0.96227 0.93006 0.88518 1.44284 1.65540 1.22441 1.01138 1.19409 1.18001 0.95192 1.07211 0.92411 1.25611 0.98432 0.99285 1.00032 1.70154 1.28445 1.39203 1.19266 0.85518 0.79488 0.79376 0.77059 1.21189 1.21315 1.20532 1.20651 0.95382 0.88681 0.88973 0.93597 0.92742 0.89841 0.75637 0.82417 0.77637 0.70353 0.90896 0.91614 0.89898 0.93017 0.96847 0.93344 0.93799 0.91975 0.97506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 8.79 71.98 0.63 -4.41 16 2 C 0.16 5.37 2.41 44.99 0.11 5.47 16 3 H 0.08 2.71 7.58 -2.39 -0.02 2.70 16 4 N -0.71 -24.44 4.96 -445.48 -2.21 -26.65 16 5 C 0.55 20.32 7.75 86.76 0.67 20.99 16 6 O -0.55 -23.25 15.85 -3.91 -0.06 -23.31 16 7 C -0.07 -2.16 5.93 -19.75 -0.12 -2.27 16 8 C -0.14 -3.69 9.60 22.63 0.22 -3.47 16 9 C 0.13 3.08 11.14 84.73 0.94 4.02 16 10 N -0.47 -11.82 10.35 -192.83 -2.00 -13.82 16 11 C 0.22 5.53 8.46 133.92 1.13 6.66 16 12 N -0.57 -8.86 6.23 -195.71 -1.22 -10.08 16 13 H 0.45 3.19 8.96 -92.71 -0.83 2.36 16 14 C 0.30 4.82 12.97 180.02 2.34 7.15 16 15 N -0.53 -15.45 10.63 -191.51 -2.04 -17.49 16 16 C 0.03 0.92 6.85 40.01 0.27 1.20 16 17 C -0.11 -3.87 2.33 -10.71 -0.03 -3.89 16 18 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.10 -3.08 4.78 30.73 0.15 -2.93 16 20 C -0.12 -3.92 6.11 30.78 0.19 -3.73 16 21 C 0.14 5.51 6.50 86.36 0.56 6.07 16 22 N -0.61 -29.25 2.99 -699.08 -2.09 -31.34 16 23 C -0.27 -14.13 9.58 84.03 0.81 -13.33 16 24 H 0.06 3.04 7.89 -2.91 -0.02 3.02 16 25 C -0.04 -1.94 4.92 84.86 0.42 -1.53 16 26 N -0.93 -49.94 11.20 21.65 0.24 -49.70 16 27 Si 0.96 42.07 29.59 68.60 2.03 44.09 16 28 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 29 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 30 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 31 C 0.19 8.29 4.08 86.36 0.35 8.64 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.93 6.32 -2.38 -0.02 1.91 16 34 H 0.08 2.36 6.46 -2.39 -0.02 2.35 16 35 H 0.41 13.92 5.11 -92.71 -0.47 13.45 16 36 H 0.16 4.02 6.53 -2.91 -0.02 4.00 16 37 H 0.21 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.28 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.98 6.50 -2.38 -0.02 1.96 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 45 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 46 H 0.06 2.97 4.65 -2.39 -0.01 2.96 16 47 H 0.01 0.33 6.19 -2.39 -0.01 0.32 16 Total: -1.00 -76.34 372.70 1.04 -75.30 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.27 Total: 28.34 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 8.65 Total: 24.64 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -9.31 Total: -149.07 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -76.34 1.04 -75.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025431464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.959 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds