Wall clock time and date at job start Wed Apr 1 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00651 * 2 1 3 5 5 C 1.34773 * 120.00256 * 85.00459 * 4 2 1 6 6 O 1.21590 * 120.00110 * 359.97438 * 5 4 2 7 7 C 1.47501 * 120.00358 * 179.97438 * 5 4 2 8 8 C 1.36887 * 120.61408 * 179.97438 * 7 5 4 9 9 C 1.40137 * 119.25960 * 179.97438 * 8 7 5 10 10 N 1.31145 * 120.46271 * 0.02562 * 9 8 7 11 11 C 1.33705 * 121.18418 * 359.97438 * 10 9 8 12 12 C 1.39068 * 132.55626 * 179.97438 * 11 10 9 13 13 C 1.38496 * 107.66890 * 180.02562 * 12 11 10 14 14 N 1.31527 * 109.03846 * 0.02562 * 13 12 11 15 15 N 1.37288 * 120.63627 * 359.74610 * 11 10 9 16 16 C 1.52993 * 109.47334 * 120.00657 * 2 1 3 17 17 H 1.08999 * 109.50168 * 59.93134 * 16 2 1 18 18 C 1.53051 * 109.52109 * 299.85274 * 16 2 1 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 2 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46989 * 299.99339 * 1 2 3 33 33 H 1.09001 * 109.46941 * 59.99785 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.07999 * 120.37002 * 0.02562 * 8 7 5 36 36 H 1.07997 * 119.76530 * 180.02562 * 9 8 7 37 37 H 1.08004 * 126.16173 * 0.04792 * 12 11 10 38 38 H 1.07996 * 125.48474 * 180.02562 * 13 12 11 39 39 H 1.08990 * 109.45897 * 298.68739 * 18 16 2 40 40 H 1.09000 * 109.45851 * 58.64847 * 18 16 2 41 41 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 42 42 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 43 43 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 44 44 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 45 45 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 46 46 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 47 47 H 1.09001 * 109.58720 * 186.85647 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8576 1.1616 -2.4118 7 6 2.6392 -0.7131 -3.5615 8 6 2.7743 -0.0424 -4.7471 9 6 3.2449 -0.7306 -5.8735 10 7 3.5526 -2.0030 -5.7948 11 6 3.4276 -2.6757 -4.6461 12 6 3.6781 -3.9989 -4.2990 13 6 3.3675 -4.1475 -2.9575 14 7 2.9470 -2.9947 -2.4842 15 7 2.9764 -2.0465 -3.5124 16 6 2.0401 -0.7213 1.2491 17 1 1.6760 -1.7487 1.2501 18 6 1.5336 0.0012 2.4996 19 6 2.0160 -0.7391 3.7491 20 6 3.5433 -0.7434 3.7779 21 7 4.0443 -1.3013 2.5144 22 6 4.9301 -2.3456 2.5155 23 1 4.9568 -3.0320 1.6821 24 6 5.7939 -2.5218 3.5877 25 7 6.1263 -1.4948 4.3408 26 14 6.4786 -4.2180 3.9665 27 1 7.7523 -4.4139 3.2286 28 1 6.7285 -4.3364 5.4255 29 1 5.4991 -5.2522 3.5466 30 6 3.5720 -0.7216 1.2497 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6316 -1.1528 35 1 2.5218 1.0055 -4.8135 36 1 3.3551 -0.2093 -6.8130 37 1 4.0484 -4.7712 -4.9569 38 1 3.4564 -5.0628 -2.3912 39 1 1.9182 1.0209 2.5105 40 1 0.4439 0.0244 2.4893 41 1 1.6355 -0.2374 4.6388 42 1 1.6517 -1.7663 3.7268 43 1 3.8900 -1.3554 4.6106 44 1 3.9066 0.2776 3.8960 45 1 5.8391 -0.6011 4.0964 46 1 3.9376 0.3011 1.1574 47 1 3.9376 -1.3193 0.4147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025435713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:39 Heat of formation + Delta-G solvation = 103.738605 kcal Electronic energy + Delta-G solvation = -30711.000855 eV Core-core repulsion = 26703.568227 eV Total energy + Delta-G solvation = -4007.432628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64160 -40.08554 -38.49109 -37.96141 -35.54599 -34.46284 -33.18967 -31.35132 -31.02451 -30.50279 -29.42419 -28.51499 -26.14639 -25.07849 -23.85503 -23.45439 -22.40363 -22.04403 -20.84045 -20.46939 -19.31764 -18.62548 -17.72011 -17.37419 -17.13627 -16.50816 -16.12518 -15.65786 -15.03336 -14.67617 -14.61097 -14.25852 -13.96449 -13.83026 -13.71796 -13.62863 -13.40463 -13.28618 -12.97381 -12.90960 -12.70389 -12.36790 -11.93617 -11.75909 -11.50280 -11.45383 -11.16226 -10.93509 -10.68935 -10.62442 -10.35840 -10.25601 -10.17863 -10.05808 -9.90349 -9.84681 -9.78653 -9.30855 -9.09710 -8.35987 -8.27008 -6.87609 -6.06112 -3.22315 -0.21535 0.50697 1.61685 2.15911 2.65019 2.74889 3.16951 3.48606 3.48990 3.53017 3.68249 3.73579 4.15297 4.50465 4.56728 4.71314 4.82952 4.89609 5.10374 5.12420 5.17630 5.28116 5.31165 5.43377 5.46603 5.47249 5.63101 5.65038 5.68418 5.86487 5.93586 5.99159 6.00992 6.14344 6.18524 6.22016 6.28256 6.37016 6.48197 6.50739 6.67987 6.71829 6.81156 7.04408 7.10762 7.20209 7.21192 7.39704 7.93111 8.00701 8.58454 9.12445 9.85661 10.30265 11.22240 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.003761 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.503726 B = 7443.601556 C = 9289.961809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.694 5.694 5 C 0.557 3.443 6 O -0.522 6.522 7 C 0.147 3.853 8 C -0.157 4.157 9 C 0.175 3.825 10 N -0.447 5.447 11 C 0.252 3.748 12 C -0.251 4.251 13 C 0.101 3.899 14 N -0.312 5.312 15 N -0.305 5.305 16 C -0.110 4.110 17 H 0.074 0.926 18 C -0.101 4.101 19 C -0.136 4.136 20 C 0.148 3.852 21 N -0.597 5.597 22 C -0.347 4.347 23 H 0.055 0.945 24 C -0.024 4.024 25 N -0.917 5.917 26 Si 1.065 2.935 27 H -0.295 1.295 28 H -0.286 1.286 29 H -0.292 1.292 30 C 0.158 3.842 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.419 0.581 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.015 0.985 45 H 0.269 0.731 46 H 0.013 0.987 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 0.480 -17.546 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 N -0.348 5.348 5 C 0.340 3.660 6 O -0.399 6.399 7 C 0.028 3.972 8 C -0.182 4.182 9 C -0.010 4.010 10 N -0.158 5.158 11 C 0.025 3.975 12 C -0.282 4.282 13 C -0.076 4.076 14 N -0.138 5.138 15 N -0.079 5.079 16 C -0.131 4.131 17 H 0.092 0.908 18 C -0.139 4.139 19 C -0.175 4.175 20 C 0.023 3.977 21 N -0.320 5.320 22 C -0.476 4.476 23 H 0.072 0.928 24 C -0.226 4.226 25 N -0.557 5.557 26 Si 0.894 3.106 27 H -0.222 1.222 28 H -0.212 1.212 29 H -0.219 1.219 30 C 0.031 3.969 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.261 0.739 35 H 0.197 0.803 36 H 0.206 0.794 37 H 0.184 0.816 38 H 0.221 0.779 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.031 0.969 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.924 0.271 -15.929 18.770 hybrid contribution -0.732 0.447 -1.241 1.508 sum -10.656 0.717 -17.170 20.221 Atomic orbital electron populations 1.22203 0.95145 1.02177 1.02424 1.21202 0.93901 0.97536 0.83406 0.89280 1.46480 1.63702 1.15944 1.08715 1.17523 0.79359 0.86498 0.82646 1.90842 1.50605 1.14103 1.84326 1.20880 0.98325 0.80543 0.97430 1.22170 1.02064 1.03525 0.90473 1.23456 0.89705 0.89005 0.98824 1.67967 1.16329 1.09351 1.22195 1.20767 0.99589 0.94574 0.82595 1.21067 1.16742 0.93603 0.96790 1.23900 0.93434 0.96300 0.93930 1.77415 1.30408 0.98041 1.07953 1.47446 1.42358 1.07386 1.10713 1.21957 0.99532 0.99405 0.92222 0.90782 1.21446 0.99037 0.98942 0.94455 1.21987 0.99751 0.99812 0.95996 1.20880 0.89718 0.96644 0.90498 1.44076 1.50109 1.38688 0.99154 1.19956 1.14533 1.03916 1.09235 0.92766 1.25818 0.95143 1.04733 0.96892 1.70748 1.42806 0.99624 1.42518 0.83556 0.75570 0.75060 0.76390 1.22216 1.21166 1.21881 1.20842 0.89897 0.96014 0.90122 0.92482 0.90851 0.92522 0.73871 0.80251 0.79425 0.81599 0.77904 0.92509 0.92740 0.92894 0.92374 0.90272 0.96718 0.92010 0.96886 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.14 37.16 0.34 -1.71 16 2 C 0.14 2.16 2.16 -67.93 -0.15 2.02 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.69 -10.56 4.47 -54.86 -0.25 -10.80 16 5 C 0.56 8.29 7.76 -12.49 -0.10 8.19 16 6 O -0.52 -8.45 16.02 5.29 0.08 -8.37 16 7 C 0.15 1.90 6.82 -81.98 -0.56 1.35 16 8 C -0.16 -1.47 9.61 -39.36 -0.38 -1.85 16 9 C 0.18 1.40 11.26 -17.13 -0.19 1.21 16 10 N -0.45 -4.98 10.44 -12.23 -0.13 -5.11 16 11 C 0.25 3.22 7.93 -155.56 -1.23 1.99 16 12 C -0.25 -2.81 10.91 -39.18 -0.43 -3.24 16 13 C 0.10 1.15 11.93 -17.59 -0.21 0.94 16 14 N -0.31 -4.44 9.92 30.46 0.30 -4.13 16 15 N -0.30 -4.19 3.94 -8.87 -0.03 -4.23 16 16 C -0.11 -1.89 1.97 -90.50 -0.18 -2.07 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.10 -1.63 4.86 -26.68 -0.13 -1.76 16 19 C -0.14 -2.53 6.06 -26.83 -0.16 -2.69 16 20 C 0.15 3.47 4.66 -3.93 -0.02 3.45 16 21 N -0.60 -14.99 2.86 -172.59 -0.49 -15.48 16 22 C -0.35 -9.72 9.49 -15.06 -0.14 -9.86 16 23 H 0.05 1.53 7.94 -52.49 -0.42 1.11 16 24 C -0.02 -0.68 4.69 -17.43 -0.08 -0.76 16 25 N -0.92 -27.58 12.40 55.49 0.69 -26.89 16 26 Si 1.06 25.29 29.99 -169.99 -5.10 20.19 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 C 0.16 3.39 5.56 -3.71 -0.02 3.36 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.42 6.57 5.44 -40.82 -0.22 6.35 16 35 H 0.18 1.29 7.65 -52.49 -0.40 0.89 16 36 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 43 H 0.08 2.08 6.30 -51.93 -0.33 1.75 16 44 H 0.01 0.36 7.87 -51.93 -0.41 -0.05 16 45 H 0.27 8.18 6.71 -40.82 -0.27 7.91 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 1.17 7.44 -51.93 -0.39 0.78 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -34.18 377.04 -9.40 -43.57 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.52 Total: 7.01 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.64 Total: -1.44 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.09 Total: -66.65 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -9.40 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025435713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.313 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds