Wall clock time and date at job start Wed Apr 1 2020 02:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00267 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21540 * 120.00224 * 359.97438 * 5 4 2 7 7 C 1.47978 * 119.99857 * 179.97438 * 5 4 2 8 8 C 1.39726 * 119.43094 * 179.97438 * 7 5 4 9 9 C 1.36982 * 119.60220 * 179.97438 * 8 7 5 10 10 C 1.39897 * 118.36124 * 0.02562 * 9 8 7 11 11 N 1.35432 * 133.81218 * 180.02562 * 10 9 8 12 12 C 1.30219 * 109.57393 * 179.97438 * 11 10 9 13 13 N 1.35994 * 110.18322 * 359.97438 * 12 11 10 14 14 H 0.96998 * 126.29577 * 179.97438 * 13 12 11 15 15 C 1.37943 * 107.41143 * 0.02562 * 13 12 11 16 16 N 1.31887 * 133.83032 * 180.34606 * 15 13 12 17 17 C 1.52993 * 109.47292 * 120.00069 * 2 1 3 18 18 H 1.09002 * 109.52579 * 59.91950 * 17 2 1 19 19 C 1.53044 * 109.49924 * 299.83829 * 17 2 1 20 20 C 1.53066 * 109.66144 * 178.74759 * 19 17 2 21 21 C 1.53202 * 109.29419 * 61.15451 * 20 19 17 22 22 N 1.46921 * 108.89095 * 305.57926 * 21 20 19 23 23 C 1.36936 * 120.62896 * 233.55861 * 22 21 20 24 24 H 1.08007 * 119.99922 * 151.82366 * 23 22 21 25 25 C 1.38810 * 119.99947 * 331.81879 * 23 22 21 26 26 N 1.31613 * 120.00273 * 343.08601 * 25 23 22 27 27 Si 1.86803 * 119.99828 * 163.07892 * 25 23 22 28 28 H 1.48507 * 109.47194 * 60.00090 * 27 25 23 29 29 H 1.48502 * 109.47096 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47239 * 300.00059 * 27 25 23 31 31 C 1.46925 * 118.73959 * 53.53708 * 22 21 20 32 32 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47341 * 299.99480 * 1 2 3 34 34 H 1.08997 * 109.47418 * 60.00065 * 1 2 3 35 35 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 36 36 H 1.08001 * 120.19858 * 0.02562 * 8 7 5 37 37 H 1.08001 * 120.81942 * 180.02562 * 9 8 7 38 38 H 1.08003 * 124.90759 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46193 * 298.70732 * 19 17 2 40 40 H 1.09008 * 109.45699 * 58.67496 * 19 17 2 41 41 H 1.09002 * 109.39095 * 301.28091 * 20 19 17 42 42 H 1.08998 * 109.62674 * 181.17131 * 20 19 17 43 43 H 1.08997 * 109.58441 * 185.72130 * 21 20 19 44 44 H 1.09001 * 109.58226 * 65.43722 * 21 20 19 45 45 H 0.96997 * 120.00271 * 180.02562 * 26 25 23 46 46 H 1.08996 * 109.59125 * 66.18147 * 31 22 21 47 47 H 1.09006 * 109.58704 * 186.46412 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1610 -2.4118 7 6 2.6407 -0.7156 -3.5653 8 6 2.7690 -0.0071 -4.7628 9 6 3.2262 -0.6491 -5.8831 10 6 3.5509 -2.0063 -5.7854 11 7 4.0172 -2.9245 -6.6651 12 6 4.1573 -4.0717 -6.0650 13 7 3.7908 -3.9663 -4.7597 14 1 3.8027 -4.6779 -4.1006 15 6 3.3977 -2.6615 -4.5454 16 7 2.9590 -2.0012 -3.4913 17 6 2.0400 -0.7212 1.2492 18 1 1.6760 -1.7487 1.2508 19 6 1.5336 0.0021 2.4992 20 6 2.0159 -0.7345 3.7513 21 6 3.5477 -0.7379 3.7781 22 7 4.0443 -1.3003 2.5149 23 6 4.9301 -2.3445 2.5167 24 1 4.9508 -3.0366 1.6877 25 6 5.8017 -2.5135 3.5838 26 7 6.0200 -1.5200 4.4189 27 14 6.6646 -4.1512 3.8346 28 1 7.4932 -4.4620 2.6420 29 1 7.5344 -4.0736 5.0357 30 1 5.6517 -5.2203 4.0259 31 6 3.5720 -0.7215 1.2498 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 2.2490 -1.6317 -1.1526 36 1 2.5100 1.0406 -4.8046 37 1 3.3334 -0.1205 -6.8188 38 1 4.5139 -4.9759 -6.5358 39 1 1.9182 1.0219 2.5096 40 1 0.4438 0.0250 2.4889 41 1 1.6501 -1.7611 3.7307 42 1 1.6376 -0.2309 4.6409 43 1 3.8971 -1.3470 4.6117 44 1 3.9133 0.2825 3.8926 45 1 6.6292 -1.6380 5.1644 46 1 3.9376 0.3011 1.1568 47 1 3.9396 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025455331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:38 Heat of formation + Delta-G solvation = 66.063182 kcal Electronic energy + Delta-G solvation = -29898.893558 eV Core-core repulsion = 25889.827201 eV Total energy + Delta-G solvation = -4009.066357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66506 -40.13752 -38.48120 -37.58737 -35.26341 -34.08612 -33.02264 -31.68295 -31.10210 -30.48238 -29.88723 -28.44435 -25.45823 -25.05160 -23.85065 -23.08675 -21.97168 -21.91959 -20.99767 -20.31774 -19.22542 -18.92794 -18.02482 -17.43314 -16.70218 -16.08473 -15.92662 -15.29185 -15.12226 -14.86979 -14.74611 -14.34465 -14.06910 -13.71714 -13.51032 -13.39310 -13.15787 -13.13421 -12.87270 -12.48593 -12.44430 -12.21319 -11.78784 -11.57271 -11.52376 -11.42183 -11.10660 -10.96176 -10.66692 -10.43779 -10.29177 -10.17869 -10.13012 -9.89127 -9.62729 -9.47105 -9.40709 -9.24739 -8.98414 -8.76576 -8.46054 -6.65535 -5.78694 -3.21376 0.16934 0.93267 2.15163 2.22052 2.84282 3.14314 3.35715 3.41859 3.42484 3.69095 3.70280 4.01338 4.28211 4.47110 4.68600 4.73787 4.81224 4.99139 5.27518 5.30327 5.38076 5.43380 5.45340 5.57015 5.61265 5.73767 5.74765 5.79696 5.82325 6.04281 6.09474 6.14119 6.21664 6.31807 6.36582 6.45362 6.56841 6.63563 6.67917 6.72947 6.83608 6.89086 7.00618 7.27423 7.34135 7.41195 7.66616 7.68856 7.78414 8.22911 8.45344 9.21612 9.85214 10.42520 11.29644 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.003280 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.128492 B = 8533.252687 C =10786.301823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.089 0.911 4 N -0.696 5.696 5 C 0.574 3.426 6 O -0.533 6.533 7 C 0.124 3.876 8 C -0.124 4.124 9 C -0.028 4.028 10 C 0.022 3.978 11 N -0.493 5.493 12 C 0.286 3.714 13 N -0.586 5.586 14 H 0.433 0.567 15 C 0.236 3.764 16 N -0.450 5.450 17 C -0.110 4.110 18 H 0.071 0.929 19 C -0.101 4.101 20 C -0.142 4.142 21 C 0.169 3.831 22 N -0.591 5.591 23 C -0.253 4.253 24 H 0.063 0.937 25 C 0.003 3.997 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.284 1.284 31 C 0.155 3.845 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.410 0.590 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.227 0.773 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -2.730 -17.789 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.107 0.893 4 N -0.346 5.346 5 C 0.358 3.642 6 O -0.410 6.410 7 C -0.025 4.025 8 C -0.148 4.148 9 C -0.056 4.056 10 C -0.100 4.100 11 N -0.213 5.213 12 C -0.002 4.002 13 N -0.201 5.201 14 H 0.273 0.727 15 C -0.002 4.002 16 N -0.165 5.165 17 C -0.131 4.131 18 H 0.090 0.910 19 C -0.139 4.139 20 C -0.181 4.181 21 C 0.043 3.957 22 N -0.313 5.313 23 C -0.382 4.382 24 H 0.081 0.919 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.731 3.269 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.211 1.211 31 C 0.028 3.972 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.243 0.757 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.097 -2.141 -17.724 20.037 hybrid contribution 0.668 -1.643 0.589 1.869 sum -8.429 -3.784 -17.135 19.468 Atomic orbital electron populations 1.22202 0.95496 1.01963 1.02273 1.21146 0.93629 0.97636 0.83524 0.89322 1.45975 1.64834 1.14837 1.08941 1.17672 0.78087 0.85990 0.82496 1.90789 1.50812 1.14777 1.84574 1.20997 0.98625 0.88067 0.94799 1.21584 0.99559 1.02328 0.91323 1.20461 0.95229 0.90389 0.99472 1.19886 1.03586 0.95527 0.90967 1.70459 1.20316 0.99136 1.31382 1.25574 0.95927 0.98964 0.79719 1.42914 1.55334 1.09120 1.12737 0.72681 1.18868 1.02282 0.86822 0.92253 1.66203 1.11861 1.08562 1.29896 1.21959 0.99562 0.99214 0.92373 0.91022 1.21446 0.98754 0.99063 0.94611 1.22179 1.00858 0.99341 0.95727 1.20785 0.87481 0.97229 0.90185 1.44017 1.49934 1.37862 0.99489 1.19110 1.11158 1.01966 1.06006 0.91929 1.25028 0.97206 0.97389 0.99911 1.70022 1.37715 1.29330 1.17540 0.86396 0.79158 0.84035 0.77311 1.21002 1.21599 1.21066 1.20864 0.89854 0.96406 0.90035 0.92656 0.91142 0.92546 0.75338 0.82402 0.83321 0.75672 0.92542 0.93085 0.92837 0.93194 0.89656 0.96498 0.93590 0.96547 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.14 37.16 0.34 -1.69 16 2 C 0.15 2.12 2.16 -67.93 -0.15 1.98 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.70 -9.99 4.46 -54.71 -0.24 -10.23 16 5 C 0.57 8.55 7.77 -12.27 -0.10 8.46 16 6 O -0.53 -9.00 15.95 5.33 0.09 -8.92 16 7 C 0.12 1.66 6.74 -82.97 -0.56 1.10 16 8 C -0.12 -1.41 9.55 -39.48 -0.38 -1.79 16 9 C -0.03 -0.29 10.16 -39.42 -0.40 -0.69 16 10 C 0.02 0.26 7.25 -84.58 -0.61 -0.36 16 11 N -0.49 -5.19 11.27 -11.93 -0.13 -5.32 16 12 C 0.29 1.93 12.96 -89.73 -1.16 0.77 16 13 N -0.59 -4.65 6.22 -13.20 -0.08 -4.73 16 14 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 15 C 0.24 2.80 8.46 -155.73 -1.32 1.48 16 16 N -0.45 -5.94 9.54 -8.82 -0.08 -6.03 16 17 C -0.11 -1.83 1.98 -90.50 -0.18 -2.01 16 18 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.10 -1.64 4.85 -26.67 -0.13 -1.77 16 20 C -0.14 -2.66 6.09 -26.59 -0.16 -2.82 16 21 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 22 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 23 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 24 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 25 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 26 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 27 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 31 C 0.16 3.24 5.55 -3.71 -0.02 3.22 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.41 5.73 7.73 -40.82 -0.32 5.41 16 36 H 0.16 1.59 7.61 -52.49 -0.40 1.19 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.23 0.30 8.06 -52.48 -0.42 -0.12 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.71 6.37 -51.92 -0.33 0.38 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 1.07 7.44 -51.93 -0.39 0.68 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -34.26 380.59 -11.34 -45.60 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.61 Total: 5.35 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -5.07 Total: 2.83 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.44 Total: -67.12 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.26 -11.34 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025455331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.664 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds