Wall clock time and date at job start Wed Apr 1 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46763 * 2 1 4 4 N 1.46491 * 109.47105 * 120.00209 * 2 1 3 5 5 C 1.34780 * 120.00140 * 274.99960 * 4 2 1 6 6 O 1.21590 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.47577 * 119.99952 * 180.02562 * 5 4 2 8 8 C 1.36480 * 125.92083 * 179.97438 * 7 5 4 9 9 N 1.36190 * 107.01775 * 180.02562 * 8 7 5 10 10 C 1.36665 * 132.44750 * 180.02562 * 9 8 7 11 11 C 1.35478 * 119.10230 * 179.97438 * 10 9 8 12 12 C 1.40301 * 119.35623 * 0.24854 * 11 10 9 13 13 N 1.31141 * 120.41518 * 359.47205 * 12 11 10 14 14 C 1.34291 * 120.94019 * 0.53751 * 13 12 11 15 15 N 1.32213 * 131.65074 * 179.74671 * 14 13 12 16 16 C 1.52998 * 109.46930 * 240.00316 * 2 1 3 17 17 H 1.09001 * 109.49795 * 300.06580 * 16 2 1 18 18 C 1.53042 * 109.50081 * 60.16069 * 16 2 1 19 19 C 1.53038 * 109.54181 * 181.31219 * 18 16 2 20 20 C 1.53187 * 109.31476 * 298.63885 * 19 18 16 21 21 N 1.46931 * 108.77779 * 54.63323 * 20 19 18 22 22 C 1.36935 * 120.63406 * 126.37042 * 21 20 19 23 23 H 1.08000 * 119.99703 * 331.83844 * 22 21 20 24 24 C 1.38810 * 120.00260 * 151.84351 * 22 21 20 25 25 N 1.31627 * 119.99528 * 343.08203 * 24 22 21 26 26 Si 1.86791 * 120.00209 * 163.07832 * 24 22 21 27 27 H 1.48501 * 109.47168 * 59.99836 * 26 24 22 28 28 H 1.48497 * 109.47305 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47148 * 299.99893 * 26 24 22 30 30 C 1.46926 * 118.73493 * 306.39060 * 21 20 19 31 31 H 1.08998 * 109.47069 * 59.99876 * 1 2 3 32 32 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47052 * 299.99972 * 1 2 3 34 34 H 0.96998 * 120.00184 * 94.99641 * 4 2 1 35 35 H 1.08002 * 126.48972 * 0.03732 * 8 7 5 36 36 H 1.08000 * 120.45230 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.32192 * 179.97438 * 11 10 9 38 38 H 1.07998 * 119.79336 * 179.73290 * 12 11 10 39 39 H 1.09001 * 109.46202 * 301.33733 * 18 16 2 40 40 H 1.09002 * 109.45550 * 61.29619 * 18 16 2 41 41 H 1.09004 * 109.49915 * 178.68065 * 19 18 16 42 42 H 1.09003 * 109.51982 * 58.60819 * 19 18 16 43 43 H 1.09001 * 109.58553 * 294.84390 * 20 19 18 44 44 H 1.08997 * 109.70439 * 174.48907 * 20 19 18 45 45 H 0.96998 * 119.99481 * 180.02562 * 25 24 22 46 46 H 1.08997 * 109.58723 * 293.82128 * 30 21 20 47 47 H 1.08997 * 109.58568 * 173.39569 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1613 2.4119 7 6 2.6396 -0.7139 3.5619 8 6 2.8162 -0.1539 4.7939 9 7 3.2828 -1.1353 5.6147 10 6 3.6292 -1.1449 6.9367 11 6 4.0710 -2.2981 7.4938 12 6 4.1675 -3.4519 6.7014 13 7 3.8241 -3.4191 5.4362 14 6 3.3844 -2.2838 4.8693 15 7 2.9931 -2.0118 3.6361 16 6 2.0400 -0.7212 -1.2493 17 1 1.6759 -1.7486 -1.2504 18 6 1.5335 0.0022 -2.4993 19 6 2.0159 -0.7372 -3.7493 20 6 3.5475 -0.7378 -3.7783 21 7 4.0442 -1.3004 -2.5151 22 6 4.9301 -2.3446 -2.5169 23 1 4.9347 -3.0473 -3.3370 24 6 5.8220 -2.5000 -1.4647 25 7 6.0563 -1.4956 -0.6468 26 14 6.6897 -4.1343 -1.2094 27 1 7.4952 -4.4605 -2.4136 28 1 7.5834 -4.0409 -0.0271 29 1 5.6809 -5.2006 -0.9849 30 6 3.5720 -0.7215 -1.2500 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 1.1525 35 1 2.6224 0.8731 5.0663 36 1 3.5518 -0.2453 7.5294 37 1 4.3503 -2.3279 8.5366 38 1 4.5229 -4.3739 7.1372 39 1 0.4438 0.0254 -2.4889 40 1 1.9182 1.0220 -2.5095 41 1 1.6353 -0.2349 -4.6387 42 1 1.6520 -1.7645 -3.7280 43 1 3.9112 0.2835 -3.8915 44 1 3.8991 -1.3454 -4.6121 45 1 6.6798 -1.6040 0.0882 46 1 3.9376 0.3011 -1.1570 47 1 3.9376 -1.3198 -0.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025469749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:48 Heat of formation + Delta-G solvation = 90.632804 kcal Electronic energy + Delta-G solvation = -30296.109166 eV Core-core repulsion = 26288.108228 eV Total energy + Delta-G solvation = -4008.000939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.21037 -39.65240 -38.34632 -37.56149 -35.03601 -34.83819 -32.98183 -31.66920 -30.83390 -29.73434 -29.50444 -28.59178 -25.70079 -25.06522 -23.84662 -23.41169 -22.58197 -21.90169 -20.37992 -20.01985 -19.11521 -18.53652 -17.84943 -17.01644 -16.63500 -16.55797 -15.99717 -15.63698 -14.88772 -14.67054 -14.56822 -14.28117 -14.05521 -13.67966 -13.53744 -13.34657 -13.20966 -13.05753 -12.67802 -12.54495 -12.37758 -12.12307 -12.01148 -11.82374 -11.32157 -10.95607 -10.80938 -10.75818 -10.59772 -10.36086 -10.16095 -10.11724 -9.99171 -9.91244 -9.79070 -9.48163 -9.39937 -9.31940 -8.64378 -8.41302 -8.36066 -6.56865 -5.69194 -3.12144 0.17221 0.76656 1.94486 2.05226 3.20669 3.21473 3.45819 3.51369 3.52850 3.53464 3.69052 3.99784 4.15344 4.40347 4.57966 4.70253 4.91681 5.07167 5.16044 5.22197 5.29015 5.42485 5.57072 5.61604 5.65722 5.69616 5.79986 5.86230 5.90110 6.09833 6.17726 6.21880 6.23386 6.27392 6.39359 6.49750 6.53721 6.57599 6.74948 6.84321 6.92575 6.97052 7.09635 7.24576 7.44976 7.61314 7.76421 7.88232 7.94790 8.49588 8.54225 9.30523 9.94373 10.51435 11.38298 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.003844 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.965335 B = 7282.405947 C = 9551.031655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.692 5.692 5 C 0.603 3.397 6 O -0.544 6.544 7 C 0.031 3.969 8 C -0.018 4.018 9 N -0.403 5.403 10 C 0.111 3.889 11 C -0.205 4.205 12 C 0.169 3.831 13 N -0.427 5.427 14 C 0.377 3.623 15 N -0.432 5.432 16 C -0.121 4.121 17 H 0.069 0.931 18 C -0.101 4.101 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.256 4.256 23 H 0.064 0.936 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.899 3.101 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.180 3.820 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.412 0.588 35 H 0.200 0.800 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.184 0.816 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.015 0.985 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.016 0.984 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 1.692 16.872 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.341 5.341 5 C 0.387 3.613 6 O -0.421 6.421 7 C -0.103 4.103 8 C -0.153 4.153 9 N -0.080 5.080 10 C -0.020 4.020 11 C -0.228 4.228 12 C -0.020 4.020 13 N -0.138 5.138 14 C 0.027 3.973 15 N -0.155 5.155 16 C -0.142 4.142 17 H 0.087 0.913 18 C -0.139 4.139 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.314 5.314 22 C -0.386 4.386 23 H 0.081 0.919 24 C -0.193 4.193 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 C 0.054 3.946 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.217 0.783 36 H 0.194 0.806 37 H 0.183 0.817 38 H 0.201 0.799 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.763 1.379 15.556 17.908 hybrid contribution 0.762 -0.048 1.502 1.685 sum -8.002 1.331 17.058 18.889 Atomic orbital electron populations 1.22217 0.95856 1.01877 1.01982 1.21059 0.93129 0.97561 0.83744 0.89561 1.45866 1.64585 1.14928 1.08684 1.16733 0.77459 0.85441 0.81685 1.90770 1.51804 1.14712 1.84856 1.20846 1.04568 0.90344 0.94590 1.22579 1.07722 0.95135 0.89893 1.43912 1.41972 1.12839 1.09313 1.22233 0.95962 1.01289 0.82488 1.21838 1.05141 0.92597 1.03218 1.23371 0.92010 0.98926 0.87713 1.67987 1.11672 1.21505 1.12652 1.21898 1.04002 0.82848 0.88530 1.70872 1.17173 1.13923 1.13573 1.22165 1.01454 0.98759 0.91831 0.91279 1.21436 0.98756 0.98988 0.94721 1.21996 0.99129 0.99851 0.96259 1.20919 0.91022 0.96281 0.90079 1.44014 1.49988 1.37957 0.99422 1.19107 1.10457 1.01740 1.07267 0.91850 1.25014 0.97062 0.97218 0.99960 1.70020 1.36677 1.28851 1.18603 0.86421 0.79250 0.84244 0.77176 1.21023 1.21741 1.20883 1.20780 0.86205 0.97168 0.90459 0.91374 0.92660 0.92686 0.75131 0.78281 0.80603 0.81665 0.79949 0.93096 0.92598 0.93194 0.92457 0.96663 0.93023 0.93704 0.96640 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.14 37.16 0.34 -2.00 16 2 C 0.15 2.61 2.16 -67.93 -0.15 2.46 16 3 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 4 N -0.69 -12.64 4.47 -54.84 -0.25 -12.89 16 5 C 0.60 11.11 7.78 -12.45 -0.10 11.01 16 6 O -0.54 -10.65 16.53 5.29 0.09 -10.57 16 7 C 0.03 0.53 6.94 -83.43 -0.58 -0.05 16 8 C -0.02 -0.24 11.47 -16.25 -0.19 -0.43 16 9 N -0.40 -4.95 2.93 -64.13 -0.19 -5.14 16 10 C 0.11 0.80 11.05 -16.38 -0.18 0.62 16 11 C -0.20 -1.13 10.06 -39.79 -0.40 -1.53 16 12 C 0.17 1.39 11.27 -17.07 -0.19 1.20 16 13 N -0.43 -6.04 10.49 -13.67 -0.14 -6.18 16 14 C 0.38 6.03 8.90 -322.41 -2.87 3.16 16 15 N -0.43 -8.04 11.01 -11.03 -0.12 -8.16 16 16 C -0.12 -2.31 1.97 -90.50 -0.18 -2.49 16 17 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.10 -1.71 4.86 -26.69 -0.13 -1.84 16 19 C -0.13 -2.36 6.08 -26.62 -0.16 -2.52 16 20 C 0.14 3.11 6.52 -3.71 -0.02 3.08 16 21 N -0.59 -15.22 2.99 -172.32 -0.52 -15.74 16 22 C -0.26 -7.23 9.58 -15.06 -0.14 -7.38 16 23 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 24 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 25 N -0.90 -26.97 11.20 55.49 0.62 -26.35 16 26 Si 0.90 22.68 29.59 -169.99 -5.03 17.65 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 30 C 0.18 4.37 4.34 -3.71 -0.02 4.35 16 31 H 0.07 0.89 6.41 -51.93 -0.33 0.55 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 7.82 8.11 -40.82 -0.33 7.49 16 35 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.17 0.20 8.06 -52.49 -0.42 -0.23 16 38 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.05 0.74 6.37 -51.93 -0.33 0.41 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.46 5.56 -51.93 -0.29 2.17 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -36.78 383.08 -11.53 -48.31 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.71 Total: 5.55 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -5.05 Total: 7.74 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -0.59 Total: -74.45 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.78 -11.53 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025469749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.940 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds