Wall clock time and date at job start Wed Apr 1 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47369 * 2 1 4 4 N 1.46499 * 109.46933 * 240.00080 * 2 1 3 5 5 C 1.34770 * 120.00347 * 85.00002 * 4 2 1 6 6 O 1.21601 * 119.99646 * 359.97438 * 5 4 2 7 7 C 1.47573 * 120.00402 * 179.97438 * 5 4 2 8 8 C 1.36477 * 125.92526 * 179.97438 * 7 5 4 9 9 N 1.36186 * 107.01803 * 179.97438 * 8 7 5 10 10 C 1.36674 * 132.44307 * 180.02562 * 9 8 7 11 11 C 1.35475 * 119.10065 * 179.97438 * 10 9 8 12 12 C 1.40299 * 119.35646 * 0.02562 * 11 10 9 13 13 N 1.31133 * 120.41693 * 359.97438 * 12 11 10 14 14 C 1.34290 * 120.94672 * 0.02562 * 13 12 11 15 15 N 1.32205 * 131.66352 * 180.34063 * 14 13 12 16 16 C 1.53004 * 109.47523 * 119.99757 * 2 1 3 17 17 H 1.08996 * 109.52294 * 180.02562 * 16 2 1 18 18 C 1.53041 * 109.49891 * 300.16548 * 16 2 1 19 19 C 1.53347 * 109.60817 * 181.32214 * 18 16 2 20 20 C 1.53190 * 109.15035 * 298.71338 * 19 18 16 21 21 N 1.46924 * 108.89757 * 54.57402 * 20 19 18 22 22 C 1.36933 * 120.63197 * 126.34249 * 21 20 19 23 23 H 1.07995 * 119.99809 * 332.53041 * 22 21 20 24 24 C 1.38814 * 120.00193 * 152.52492 * 22 21 20 25 25 N 1.31612 * 120.00114 * 159.33007 * 24 22 21 26 26 Si 1.86806 * 119.99760 * 339.33149 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.94630 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.95100 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.94864 * 26 24 22 30 30 C 1.46925 * 118.73691 * 306.32456 * 21 20 19 31 31 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46962 * 300.00046 * 1 2 3 33 33 H 1.08997 * 109.47118 * 59.99911 * 1 2 3 34 34 H 0.97001 * 119.99679 * 264.99520 * 4 2 1 35 35 H 1.08011 * 126.48694 * 359.96449 * 8 7 5 36 36 H 1.08001 * 120.44980 * 359.97438 * 10 9 8 37 37 H 1.08002 * 120.31788 * 179.97438 * 11 10 9 38 38 H 1.08008 * 119.79065 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.45325 * 301.33561 * 18 16 2 40 40 H 1.08993 * 109.46240 * 61.30263 * 18 16 2 41 41 H 1.08993 * 109.68581 * 178.74087 * 19 18 16 42 42 H 1.09005 * 109.47465 * 58.54922 * 19 18 16 43 43 H 1.09007 * 109.57945 * 294.71841 * 20 19 18 44 44 H 1.08998 * 109.59199 * 174.43991 * 20 19 18 45 45 H 0.97001 * 120.00103 * 180.02562 * 25 24 22 46 46 H 1.09006 * 109.58897 * 173.39354 * 30 21 20 47 47 H 1.08995 * 109.59177 * 293.67653 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8573 1.1614 -2.4118 7 6 2.6394 -0.7138 -3.5619 8 6 2.8150 -0.1540 -4.7941 9 7 3.2820 -1.1353 -5.6149 10 6 3.6286 -1.1447 -6.9369 11 6 4.0717 -2.2975 -7.4937 12 6 4.1639 -3.4525 -6.7026 13 7 3.8254 -3.4185 -5.4362 14 6 3.3844 -2.2837 -4.8694 15 7 2.9985 -2.0102 -3.6349 16 6 2.0401 -0.7212 1.2493 17 1 3.1300 -0.7213 1.2503 18 6 1.5269 -0.0026 2.4993 19 6 2.0638 -0.7039 3.7529 20 6 1.5535 -2.1481 3.7782 21 7 1.9182 -2.8039 2.5150 22 6 2.6066 -3.9876 2.5168 23 1 3.2587 -4.2317 3.3423 24 6 2.4663 -4.8737 1.4575 25 7 3.3880 -5.7870 1.2371 26 14 0.9693 -4.7698 0.3450 27 1 1.2799 -3.9076 -0.8235 28 1 0.6075 -6.1308 -0.1263 29 1 -0.1694 -4.1885 1.1003 30 6 1.5297 -2.1657 1.2499 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 2.6204 0.8729 -5.0667 36 1 3.5503 -0.2453 -7.5297 37 1 4.3505 -2.3273 -8.5367 38 1 4.5166 -4.3753 -7.1392 39 1 1.8683 1.0325 2.4888 40 1 0.4373 -0.0255 2.5097 41 1 1.7173 -0.1799 4.6435 42 1 3.1536 -0.7035 3.7309 43 1 0.4693 -2.1505 3.8915 44 1 2.0091 -2.6822 4.6120 45 1 3.2901 -6.4060 0.4967 46 1 1.9719 -2.7098 0.4153 47 1 0.4439 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025469751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:54 Heat of formation + Delta-G solvation = 99.178415 kcal Electronic energy + Delta-G solvation = -30435.820387 eV Core-core repulsion = 26428.190014 eV Total energy + Delta-G solvation = -4007.630373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31161 -39.89347 -38.57733 -37.85421 -35.19443 -34.92698 -33.03863 -31.80572 -31.02302 -30.48642 -29.64280 -28.39747 -25.79684 -25.21458 -24.26027 -23.55716 -23.13036 -22.23029 -20.46869 -20.05530 -18.99644 -18.71711 -17.93723 -17.21479 -16.68103 -16.65851 -16.08512 -15.88576 -15.22537 -14.75731 -14.73663 -14.39084 -14.33063 -14.04362 -13.77425 -13.52797 -13.41369 -13.17747 -12.95161 -12.71211 -12.51844 -12.14162 -12.04666 -12.02685 -11.71864 -11.34005 -10.93924 -10.83792 -10.63718 -10.49472 -10.42156 -10.18290 -10.03267 -9.99190 -9.71918 -9.58216 -9.50616 -9.37052 -8.86425 -8.52239 -8.51305 -6.87847 -5.86780 -3.22366 0.09299 0.67889 1.80856 1.95448 3.10252 3.11054 3.36593 3.43719 3.52842 3.56721 3.59539 3.91856 4.05807 4.31851 4.61267 4.62718 4.77966 4.88330 4.98822 5.12551 5.18642 5.21062 5.29442 5.34313 5.50474 5.60464 5.62325 5.71880 5.75189 5.89741 5.99810 6.06395 6.11027 6.12893 6.14709 6.23970 6.34570 6.39818 6.48338 6.64022 6.66099 6.69343 6.77015 6.81609 7.05274 7.16007 7.51492 7.77485 8.04427 8.29515 8.41297 9.02489 9.80600 10.18486 11.29181 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003733 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.335915 B = 7498.086172 C = 9282.635210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.701 5.701 5 C 0.602 3.398 6 O -0.542 6.542 7 C 0.023 3.977 8 C -0.016 4.016 9 N -0.403 5.403 10 C 0.109 3.891 11 C -0.202 4.202 12 C 0.171 3.829 13 N -0.425 5.425 14 C 0.379 3.621 15 N -0.434 5.434 16 C -0.115 4.115 17 H 0.080 0.920 18 C -0.101 4.101 19 C -0.135 4.135 20 C 0.147 3.853 21 N -0.604 5.604 22 C -0.264 4.264 23 H 0.085 0.915 24 C 0.028 3.972 25 N -0.905 5.905 26 Si 0.875 3.125 27 H -0.282 1.282 28 H -0.303 1.303 29 H -0.273 1.273 30 C 0.131 3.869 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.201 0.799 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.185 0.815 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.061 0.939 45 H 0.263 0.737 46 H 0.069 0.931 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 12.823 -17.681 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.352 5.352 5 C 0.386 3.614 6 O -0.420 6.420 7 C -0.111 4.111 8 C -0.151 4.151 9 N -0.081 5.081 10 C -0.021 4.021 11 C -0.225 4.225 12 C -0.018 4.018 13 N -0.136 5.136 14 C 0.029 3.971 15 N -0.156 5.156 16 C -0.135 4.135 17 H 0.098 0.902 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.021 3.979 21 N -0.327 5.327 22 C -0.392 4.392 23 H 0.103 0.897 24 C -0.172 4.172 25 N -0.548 5.548 26 Si 0.705 3.295 27 H -0.209 1.209 28 H -0.232 1.232 29 H -0.198 1.198 30 C 0.005 3.995 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.218 0.782 36 H 0.195 0.805 37 H 0.184 0.816 38 H 0.202 0.798 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.862 12.323 -16.302 20.453 hybrid contribution -0.628 0.620 -2.067 2.247 sum -1.490 12.943 -18.368 22.520 Atomic orbital electron populations 1.22291 0.95402 1.02670 1.02168 1.21106 0.94217 0.96895 0.83517 0.89404 1.46136 1.64814 1.15329 1.08948 1.16789 0.77474 0.85468 0.81669 1.90774 1.51708 1.14711 1.84817 1.20820 1.05133 0.90479 0.94695 1.22557 1.07607 0.95174 0.89811 1.43956 1.41961 1.12770 1.09386 1.22241 0.96091 1.01386 0.82430 1.21872 1.04859 0.92525 1.03259 1.23422 0.91805 0.98981 0.87629 1.68025 1.11540 1.21308 1.12717 1.21913 1.03821 0.82916 0.88410 1.70929 1.17133 1.13670 1.13912 1.21979 1.01506 0.97551 0.92511 0.90184 1.21488 1.00330 0.97875 0.94258 1.22053 1.01133 0.97945 0.96309 1.20939 0.96497 0.91178 0.89282 1.44302 1.66009 1.23147 0.99279 1.18904 1.19056 0.93015 1.08196 0.89738 1.25248 0.97671 0.96191 0.98069 1.69816 1.32671 1.21483 1.30799 0.87060 0.85641 0.75992 0.80782 1.20892 1.23170 1.19789 1.21448 0.97004 0.90760 0.90301 0.91926 0.91083 0.92495 0.74704 0.78208 0.80548 0.81551 0.79778 0.92832 0.92015 0.92610 0.91999 0.96113 0.92023 0.92714 0.91326 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 8.79 37.16 0.33 -2.24 16 2 C 0.15 2.44 2.41 -67.93 -0.16 2.28 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 4 N -0.70 -12.74 5.00 -54.83 -0.27 -13.02 16 5 C 0.60 10.54 7.78 -12.46 -0.10 10.44 16 6 O -0.54 -9.82 16.53 5.28 0.09 -9.73 16 7 C 0.02 0.38 6.94 -83.43 -0.58 -0.20 16 8 C -0.02 -0.20 11.47 -16.25 -0.19 -0.39 16 9 N -0.40 -4.69 2.93 -64.13 -0.19 -4.88 16 10 C 0.11 0.71 11.05 -16.38 -0.18 0.53 16 11 C -0.20 -1.01 10.06 -39.79 -0.40 -1.41 16 12 C 0.17 1.37 11.27 -17.08 -0.19 1.18 16 13 N -0.43 -6.06 10.48 -13.67 -0.14 -6.21 16 14 C 0.38 6.02 8.90 -322.42 -2.87 3.15 16 15 N -0.43 -8.16 11.01 -11.03 -0.12 -8.28 16 16 C -0.11 -2.07 2.33 -90.49 -0.21 -2.28 16 17 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 18 C -0.10 -1.58 4.77 -26.53 -0.13 -1.71 16 19 C -0.14 -2.23 6.11 -26.45 -0.16 -2.39 16 20 C 0.15 2.94 6.50 -3.71 -0.02 2.91 16 21 N -0.60 -14.64 2.77 -172.32 -0.48 -15.12 16 22 C -0.26 -7.55 10.03 -15.06 -0.15 -7.70 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.03 0.82 5.23 -17.43 -0.09 0.73 16 25 N -0.91 -28.58 13.97 55.49 0.78 -27.80 16 26 Si 0.88 23.29 24.35 -169.99 -4.14 19.15 16 27 H -0.28 -7.29 6.62 56.52 0.37 -6.92 16 28 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 29 H -0.27 -7.10 6.64 56.52 0.38 -6.72 16 30 C 0.13 2.88 2.99 -3.71 -0.01 2.87 16 31 H 0.06 1.04 6.32 -51.93 -0.33 0.71 16 32 H 0.07 0.95 6.46 -51.92 -0.34 0.61 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.42 8.38 6.67 -40.82 -0.27 8.11 16 35 H 0.20 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.17 0.11 8.06 -52.49 -0.42 -0.31 16 38 H 0.19 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.92 6.50 -51.93 -0.34 0.58 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 46 H 0.07 1.69 3.10 -51.93 -0.16 1.53 16 47 H 0.03 0.67 5.11 -51.93 -0.27 0.41 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -37.93 371.15 -10.35 -48.28 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.34 Total: 6.22 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -5.12 Total: 5.78 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -0.43 Total: -75.30 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.14 Total: 19.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.93 -10.35 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025469751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.461 kcal (2) G-P(sol) polarization free energy of solvation -37.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds