Wall clock time and date at job start Wed Apr 1 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47431 * 2 1 4 4 N 1.46509 * 109.46820 * 240.01006 * 2 1 3 5 5 C 1.34772 * 120.00378 * 84.99555 * 4 2 1 6 6 O 1.21763 * 119.99439 * 0.02562 * 5 4 2 7 7 C 1.46184 * 120.00296 * 179.97438 * 5 4 2 8 8 C 1.38719 * 126.76679 * 179.68584 * 7 5 4 9 9 N 1.32279 * 108.18075 * 179.88983 * 8 7 5 10 10 C 1.33132 * 109.71386 * 0.38346 * 9 8 7 11 11 C 1.40628 * 132.28863 * 179.79793 * 10 9 8 12 12 C 1.36302 * 119.22593 * 179.97438 * 11 10 9 13 13 C 1.39883 * 120.12067 * 0.02562 * 12 11 10 14 14 N 1.30804 * 120.77311 * 359.97438 * 13 12 11 15 15 N 1.36651 * 108.62972 * 359.75965 * 10 9 8 16 16 C 1.52999 * 109.47661 * 120.00739 * 2 1 3 17 17 H 1.08998 * 109.49591 * 60.06382 * 16 2 1 18 18 C 1.53040 * 109.49593 * 300.00172 * 16 2 1 19 19 C 1.53040 * 109.53551 * 178.68151 * 18 16 2 20 20 C 1.53195 * 109.31258 * 61.36550 * 19 18 16 21 21 N 1.46931 * 108.77263 * 305.36025 * 20 19 18 22 22 C 1.36940 * 120.62913 * 233.58486 * 21 20 19 23 23 H 1.08000 * 119.99560 * 151.83521 * 22 21 20 24 24 C 1.38811 * 120.00116 * 331.84069 * 22 21 20 25 25 N 1.31621 * 119.99844 * 343.07340 * 24 22 21 26 26 Si 1.86794 * 119.99919 * 163.08078 * 24 22 21 27 27 H 1.48493 * 109.47564 * 89.99444 * 26 24 22 28 28 H 1.48505 * 109.47090 * 209.99651 * 26 24 22 29 29 H 1.48507 * 109.47183 * 329.99113 * 26 24 22 30 30 C 1.46922 * 118.73654 * 53.61655 * 21 20 19 31 31 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46658 * 299.99258 * 1 2 3 33 33 H 1.08995 * 109.47735 * 59.99099 * 1 2 3 34 34 H 0.97006 * 119.99448 * 264.99640 * 4 2 1 35 35 H 1.08002 * 125.91045 * 0.04522 * 8 7 5 36 36 H 1.08004 * 120.38678 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.94423 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.61415 * 180.02562 * 13 12 11 39 39 H 1.09004 * 109.45545 * 298.69670 * 18 16 2 40 40 H 1.08997 * 109.46101 * 58.67149 * 18 16 2 41 41 H 1.08999 * 109.49408 * 181.30987 * 19 18 16 42 42 H 1.08997 * 109.49752 * 301.38053 * 19 18 16 43 43 H 1.08997 * 109.58709 * 65.15276 * 20 19 18 44 44 H 1.09002 * 109.58232 * 185.57735 * 20 19 18 45 45 H 0.97004 * 119.99804 * 180.02562 * 25 24 22 46 46 H 1.09005 * 109.58619 * 186.60625 * 30 21 20 47 47 H 1.08997 * 109.58955 * 66.17494 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1964 5 6 2.1469 -0.0180 -2.3573 6 8 1.8577 1.1635 -2.4116 7 6 2.6346 -0.7068 -3.5509 8 6 2.8143 -0.1570 -4.8117 9 7 3.2718 -1.1042 -5.6137 10 6 3.3908 -2.2455 -4.9386 11 6 3.8208 -3.5293 -5.3187 12 6 3.8376 -4.5274 -4.3906 13 6 3.4302 -4.2716 -3.0771 14 7 3.0298 -3.0783 -2.7210 15 7 3.0006 -2.0311 -3.6466 16 6 2.0401 -0.7214 1.2491 17 1 1.6780 -1.7494 1.2488 18 6 1.5303 -0.0006 2.4992 19 6 2.0128 -0.7404 3.7490 20 6 3.5444 -0.7373 3.7799 21 7 4.0440 -1.2974 2.5167 22 6 4.9330 -2.3390 2.5185 23 1 4.9566 -3.0302 1.6890 24 6 5.8037 -2.5064 3.5866 25 7 6.0181 -1.5129 4.4228 26 14 6.6712 -4.1417 3.8368 27 1 7.9638 -4.1334 3.1059 28 1 6.9229 -4.3520 5.2852 29 1 5.8164 -5.2399 3.3184 30 6 3.5720 -0.7182 1.2516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 2.2490 -1.6317 -1.1529 35 1 2.6173 0.8679 -5.0897 36 1 4.1341 -3.7221 -6.3341 37 1 4.1653 -5.5178 -4.6700 38 1 3.4472 -5.0683 -2.3483 39 1 1.9127 1.0201 2.5111 40 1 0.4406 0.0199 2.4875 41 1 1.6301 -0.2398 4.6384 42 1 1.6509 -1.7683 3.7257 43 1 3.9056 0.2846 3.8947 44 1 3.8942 -1.3465 4.6134 45 1 6.6269 -1.6298 5.1690 46 1 3.9400 -1.3147 0.4168 47 1 3.9355 0.3054 1.1603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025553010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:03 Heat of formation + Delta-G solvation = 101.552377 kcal Electronic energy + Delta-G solvation = -30515.475126 eV Core-core repulsion = 26507.947695 eV Total energy + Delta-G solvation = -4007.527430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.82230 -39.69152 -38.39069 -37.74123 -35.21883 -34.13217 -32.96036 -31.58973 -31.08944 -30.47345 -29.61703 -28.43857 -25.41132 -25.11899 -24.34211 -23.40822 -22.27387 -21.89801 -20.77616 -20.32529 -19.36708 -18.55059 -17.83729 -16.85832 -16.51594 -16.48962 -16.21748 -15.79357 -14.92866 -14.61639 -14.35480 -14.24832 -14.08297 -13.91671 -13.64771 -13.39779 -13.29385 -13.15176 -12.97559 -12.62999 -12.45713 -12.25376 -11.80368 -11.59300 -11.51031 -11.43953 -11.11020 -10.98419 -10.66615 -10.44427 -10.41439 -10.22298 -10.14368 -10.05237 -9.89230 -9.78538 -9.55091 -9.42044 -8.94451 -8.50368 -8.47057 -6.66307 -5.79781 -3.22318 -0.01013 0.55910 1.42934 2.03562 2.94146 3.18578 3.27781 3.33557 3.40338 3.41940 3.66991 3.70937 4.12711 4.45334 4.46083 4.75206 4.89903 4.96006 5.01559 5.18953 5.27692 5.34694 5.37515 5.39452 5.43847 5.56568 5.61090 5.77373 5.82063 5.86294 6.04024 6.09086 6.13420 6.15099 6.31153 6.36054 6.45025 6.57625 6.62811 6.72073 6.82628 6.88664 6.99649 7.08911 7.29599 7.40396 7.64080 7.67519 7.77029 8.23866 8.44079 9.20323 9.84033 10.41699 11.28586 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003820 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.783441 B = 7328.052085 C = 9422.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.089 0.911 4 N -0.708 5.708 5 C 0.596 3.404 6 O -0.534 6.534 7 C -0.059 4.059 8 C 0.105 3.895 9 N -0.467 5.467 10 C 0.180 3.820 11 C -0.006 4.006 12 C -0.171 4.171 13 C 0.143 3.857 14 N -0.263 5.263 15 N -0.252 5.252 16 C -0.110 4.110 17 H 0.070 0.930 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.251 4.251 23 H 0.063 0.937 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.156 3.844 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.203 0.797 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.253 0.747 46 H 0.049 0.951 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -5.464 -16.019 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.381 3.619 6 O -0.411 6.411 7 C -0.178 4.178 8 C -0.057 4.057 9 N -0.187 5.187 10 C -0.065 4.065 11 C -0.033 4.033 12 C -0.197 4.197 13 C -0.049 4.049 14 N -0.074 5.074 15 N -0.023 5.023 16 C -0.130 4.130 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.381 4.381 23 H 0.080 0.920 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.030 3.970 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.245 0.755 35 H 0.220 0.780 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.223 0.777 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.157 -4.084 -15.761 18.679 hybrid contribution 0.824 -1.840 0.330 2.043 sum -8.333 -5.924 -15.431 18.510 Atomic orbital electron populations 1.22202 0.95539 1.01870 1.02299 1.21125 0.93609 0.97613 0.83461 0.89338 1.46139 1.65793 1.14854 1.09189 1.16524 0.77866 0.85967 0.81528 1.90858 1.51493 1.14215 1.84539 1.21541 1.16107 0.80678 0.99504 1.23196 0.96561 0.99565 0.86329 1.70487 1.19500 0.97465 1.31259 1.21273 1.05847 0.96941 0.82428 1.20659 0.93553 0.87237 1.01886 1.21603 1.03438 1.01706 0.92965 1.24276 0.90197 0.93217 0.97226 1.75654 1.20096 0.96628 1.15019 1.46960 1.39710 1.07623 1.08030 1.21954 0.99533 0.99167 0.92389 0.91113 1.21447 0.98762 0.99076 0.94603 1.22174 1.00855 0.99321 0.95725 1.20792 0.87457 0.97230 0.90153 1.44034 1.49719 1.38083 0.99463 1.19119 1.11021 1.02066 1.05872 0.91973 1.25037 0.97240 0.97423 0.99917 1.70039 1.37737 1.29330 1.17460 0.86335 0.79509 0.83951 0.77179 1.21486 1.21528 1.20544 1.20846 0.89893 0.96314 0.89995 0.92773 0.91081 0.92544 0.75474 0.78045 0.81769 0.82116 0.77724 0.92511 0.93066 0.93210 0.92805 0.96496 0.89609 0.93651 0.93294 0.96583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.13 37.16 0.34 -1.80 16 2 C 0.15 2.27 2.16 -67.93 -0.15 2.12 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 4 N -0.71 -11.01 4.47 -55.26 -0.25 -11.25 16 5 C 0.60 9.67 7.73 -13.07 -0.10 9.57 16 6 O -0.53 -9.70 16.57 5.13 0.09 -9.61 16 7 C -0.06 -0.86 7.10 -81.85 -0.58 -1.44 16 8 C 0.11 1.39 11.69 -17.18 -0.20 1.19 16 9 N -0.47 -6.18 11.25 -12.24 -0.14 -6.32 16 10 C 0.18 2.17 7.85 -156.07 -1.23 0.95 16 11 C -0.01 -0.04 10.11 -39.38 -0.40 -0.44 16 12 C -0.17 -0.97 10.03 -39.66 -0.40 -1.36 16 13 C 0.14 1.08 11.30 -17.37 -0.20 0.88 16 14 N -0.26 -3.13 10.04 30.62 0.31 -2.82 16 15 N -0.25 -3.38 4.05 -8.68 -0.04 -3.41 16 16 C -0.11 -1.88 1.97 -90.50 -0.18 -2.06 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.10 -1.68 4.85 -26.69 -0.13 -1.80 16 19 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 20 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 21 N -0.59 -14.74 2.99 -172.31 -0.52 -15.26 16 22 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 23 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 24 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 25 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 26 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 30 C 0.16 3.33 5.56 -3.71 -0.02 3.31 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 6.21 6.42 -40.82 -0.26 5.95 16 35 H 0.20 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.16 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 38 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.05 1.05 7.45 -51.93 -0.39 0.66 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -34.39 380.68 -9.50 -43.89 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.64 Total: 4.97 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.65 Total: 3.31 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.01 Total: -64.56 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.39 -9.50 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025553010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.445 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds