Wall clock time and date at job start Wed Apr 1 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47431 * 2 1 4 4 N 1.46509 * 109.46820 * 240.01006 * 2 1 3 5 5 C 1.34772 * 120.00378 * 84.99555 * 4 2 1 6 6 O 1.21763 * 119.99439 * 0.02562 * 5 4 2 7 7 C 1.46184 * 120.00296 * 179.97438 * 5 4 2 8 8 C 1.38719 * 126.76679 * 179.68584 * 7 5 4 9 9 N 1.32279 * 108.18075 * 179.88983 * 8 7 5 10 10 C 1.33132 * 109.71386 * 0.38346 * 9 8 7 11 11 C 1.40628 * 132.28863 * 179.79793 * 10 9 8 12 12 C 1.36302 * 119.22593 * 179.97438 * 11 10 9 13 13 C 1.39883 * 120.12067 * 0.02562 * 12 11 10 14 14 N 1.30804 * 120.77311 * 359.97438 * 13 12 11 15 15 N 1.36651 * 108.62972 * 359.75965 * 10 9 8 16 16 C 1.52999 * 109.47661 * 120.00739 * 2 1 3 17 17 H 1.08998 * 109.49591 * 60.06382 * 16 2 1 18 18 C 1.53040 * 109.49593 * 300.00172 * 16 2 1 19 19 C 1.53040 * 109.53551 * 178.68151 * 18 16 2 20 20 C 1.53195 * 109.31258 * 61.36550 * 19 18 16 21 21 N 1.46931 * 108.77263 * 305.36025 * 20 19 18 22 22 C 1.36940 * 120.62913 * 233.58486 * 21 20 19 23 23 H 1.08000 * 119.99560 * 151.83521 * 22 21 20 24 24 C 1.38811 * 120.00116 * 331.84069 * 22 21 20 25 25 N 1.31621 * 119.99844 * 343.07340 * 24 22 21 26 26 Si 1.86794 * 119.99919 * 163.08078 * 24 22 21 27 27 H 1.48493 * 109.47564 * 89.99444 * 26 24 22 28 28 H 1.48505 * 109.47090 * 209.99651 * 26 24 22 29 29 H 1.48507 * 109.47183 * 329.99113 * 26 24 22 30 30 C 1.46922 * 118.73654 * 53.61655 * 21 20 19 31 31 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46658 * 299.99258 * 1 2 3 33 33 H 1.08995 * 109.47735 * 59.99099 * 1 2 3 34 34 H 0.97006 * 119.99448 * 264.99640 * 4 2 1 35 35 H 1.08002 * 125.91045 * 0.04522 * 8 7 5 36 36 H 1.08004 * 120.38678 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.94423 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.61415 * 180.02562 * 13 12 11 39 39 H 1.09004 * 109.45545 * 298.69670 * 18 16 2 40 40 H 1.08997 * 109.46101 * 58.67149 * 18 16 2 41 41 H 1.08999 * 109.49408 * 181.30987 * 19 18 16 42 42 H 1.08997 * 109.49752 * 301.38053 * 19 18 16 43 43 H 1.08997 * 109.58709 * 65.15276 * 20 19 18 44 44 H 1.09002 * 109.58232 * 185.57735 * 20 19 18 45 45 H 0.97004 * 119.99804 * 180.02562 * 25 24 22 46 46 H 1.09005 * 109.58619 * 186.60625 * 30 21 20 47 47 H 1.08997 * 109.58955 * 66.17494 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1964 5 6 2.1469 -0.0180 -2.3573 6 8 1.8577 1.1635 -2.4116 7 6 2.6346 -0.7068 -3.5509 8 6 2.8143 -0.1570 -4.8117 9 7 3.2718 -1.1042 -5.6137 10 6 3.3908 -2.2455 -4.9386 11 6 3.8208 -3.5293 -5.3187 12 6 3.8376 -4.5274 -4.3906 13 6 3.4302 -4.2716 -3.0771 14 7 3.0298 -3.0783 -2.7210 15 7 3.0006 -2.0311 -3.6466 16 6 2.0401 -0.7214 1.2491 17 1 1.6780 -1.7494 1.2488 18 6 1.5303 -0.0006 2.4992 19 6 2.0128 -0.7404 3.7490 20 6 3.5444 -0.7373 3.7799 21 7 4.0440 -1.2974 2.5167 22 6 4.9330 -2.3390 2.5185 23 1 4.9566 -3.0302 1.6890 24 6 5.8037 -2.5064 3.5866 25 7 6.0181 -1.5129 4.4228 26 14 6.6712 -4.1417 3.8368 27 1 7.9638 -4.1334 3.1059 28 1 6.9229 -4.3520 5.2852 29 1 5.8164 -5.2399 3.3184 30 6 3.5720 -0.7182 1.2516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 2.2490 -1.6317 -1.1529 35 1 2.6173 0.8679 -5.0897 36 1 4.1341 -3.7221 -6.3341 37 1 4.1653 -5.5178 -4.6700 38 1 3.4472 -5.0683 -2.3483 39 1 1.9127 1.0201 2.5111 40 1 0.4406 0.0199 2.4875 41 1 1.6301 -0.2398 4.6384 42 1 1.6509 -1.7683 3.7257 43 1 3.9056 0.2846 3.8947 44 1 3.8942 -1.3465 4.6134 45 1 6.6269 -1.6298 5.1690 46 1 3.9400 -1.3147 0.4168 47 1 3.9355 0.3054 1.1603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025553010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:02 Heat of formation + Delta-G solvation = 79.207749 kcal Electronic energy + Delta-G solvation = -30516.444061 eV Core-core repulsion = 26507.947695 eV Total energy + Delta-G solvation = -4008.496366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.68747 -40.95208 -39.49196 -38.94266 -36.74176 -35.03852 -34.52779 -32.69377 -32.35324 -32.13661 -30.65443 -29.83574 -27.17388 -26.10160 -25.36887 -24.54148 -23.66235 -23.35480 -21.94905 -21.63997 -20.83481 -19.66991 -18.69030 -18.55243 -17.56125 -17.41520 -17.19281 -16.89149 -16.70752 -15.93392 -15.89818 -15.39619 -15.29504 -15.00771 -14.97863 -14.74356 -14.67417 -14.16373 -14.06615 -13.83858 -13.81096 -13.72587 -13.29235 -13.02810 -12.79763 -12.66029 -12.37606 -12.28852 -12.26589 -12.18564 -11.98671 -11.81010 -11.55334 -11.43372 -11.25702 -11.13222 -11.01098 -10.64679 -10.54656 -10.20509 -9.40036 -8.69171 -7.87688 -5.34507 -0.64244 -0.29364 0.60956 1.14827 1.45629 1.47295 1.57205 2.03250 2.13129 2.21990 2.50129 2.86697 2.99194 3.26850 3.49774 3.60907 3.79721 3.86778 3.91036 3.96397 4.02099 4.15703 4.23356 4.32009 4.39406 4.43353 4.47886 4.59148 4.73174 4.80390 4.81455 4.82624 4.85020 4.89860 5.02260 5.06592 5.14888 5.20625 5.22737 5.29667 5.32630 5.41728 5.47284 5.54963 5.64921 5.76740 6.28087 6.34310 6.37532 6.51437 7.02738 7.13326 7.83755 8.37259 9.18660 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.003820 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.783441 B = 7328.052085 C = 9422.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.070 0.930 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.565 6.565 7 C -0.100 4.100 8 C 0.105 3.895 9 N -0.491 5.491 10 C 0.179 3.821 11 C -0.025 4.025 12 C -0.137 4.137 13 C 0.147 3.853 14 N -0.307 5.307 15 N -0.262 5.262 16 C -0.092 4.092 17 H 0.075 0.925 18 C -0.097 4.097 19 C -0.129 4.129 20 C 0.173 3.827 21 N -0.607 5.607 22 C -0.262 4.262 23 H 0.067 0.933 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.263 1.263 30 C 0.159 3.841 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.410 0.590 35 H 0.214 0.786 36 H 0.196 0.804 37 H 0.213 0.787 38 H 0.244 0.756 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.056 0.944 43 H -0.011 1.011 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.042 0.958 47 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -8.718 -17.111 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.088 0.912 4 N -0.359 5.359 5 C 0.382 3.618 6 O -0.445 6.445 7 C -0.218 4.218 8 C -0.057 4.057 9 N -0.211 5.211 10 C -0.067 4.067 11 C -0.053 4.053 12 C -0.163 4.163 13 C -0.043 4.043 14 N -0.120 5.120 15 N -0.032 5.032 16 C -0.112 4.112 17 H 0.094 0.906 18 C -0.135 4.135 19 C -0.168 4.168 20 C 0.048 3.952 21 N -0.330 5.330 22 C -0.393 4.393 23 H 0.084 0.916 24 C -0.247 4.247 25 N -0.583 5.583 26 Si 0.797 3.203 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.187 1.187 30 C 0.033 3.967 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.248 0.752 35 H 0.231 0.769 36 H 0.213 0.787 37 H 0.230 0.770 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.007 0.993 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -10.138 -7.349 -16.865 21.006 hybrid contribution 1.236 -0.993 0.610 1.699 sum -8.902 -8.342 -16.255 20.324 Atomic orbital electron populations 1.22127 0.93160 1.02793 1.02872 1.21035 0.95318 0.96256 0.82755 0.91220 1.46127 1.65799 1.14874 1.09057 1.16733 0.77289 0.85687 0.82066 1.90816 1.53084 1.15409 1.85159 1.21292 1.19252 0.82024 0.99282 1.23450 0.95906 1.00220 0.86102 1.70488 1.20893 0.98119 1.31637 1.22090 1.04474 0.98130 0.82001 1.21203 0.94286 0.85684 1.04081 1.22203 0.99719 1.03155 0.91176 1.25188 0.87579 0.92427 0.99149 1.75684 1.22715 0.97821 1.15735 1.46986 1.39930 1.07531 1.08722 1.21720 0.95939 0.99833 0.93735 0.90626 1.21452 1.01031 0.98178 0.92836 1.22004 0.96588 1.00238 0.97995 1.20650 0.91011 0.94705 0.88861 1.44307 1.49883 1.38046 1.00799 1.19488 1.11168 1.02639 1.05956 0.91563 1.25860 0.98322 1.00721 0.99822 1.70214 1.38710 1.31388 1.17999 0.85258 0.78346 0.80145 0.76595 1.21374 1.21989 1.18721 1.20875 0.92947 0.94468 0.88380 0.91596 0.89348 0.93121 0.75220 0.76940 0.78721 0.76975 0.74016 0.93010 0.89157 0.90947 0.92508 0.99301 0.92773 0.94167 0.93991 0.98859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.13 71.98 0.66 -3.11 16 2 C 0.15 4.65 2.16 44.99 0.10 4.75 16 3 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 4 N -0.71 -22.43 4.47 -446.93 -2.00 -24.43 16 5 C 0.59 20.22 7.73 86.31 0.67 20.89 16 6 O -0.56 -21.59 16.57 -4.55 -0.08 -21.66 16 7 C -0.10 -3.06 7.10 40.40 0.29 -2.78 16 8 C 0.11 2.92 11.69 84.74 0.99 3.91 16 9 N -0.49 -13.14 11.25 -192.62 -2.17 -15.31 16 10 C 0.18 4.19 7.85 134.00 1.05 5.24 16 11 C -0.03 -0.31 10.11 22.40 0.23 -0.08 16 12 C -0.14 -0.91 10.03 22.22 0.22 -0.68 16 13 C 0.15 1.71 11.30 85.24 0.96 2.67 16 14 N -0.31 -6.95 10.04 -57.04 -0.57 -7.52 16 15 N -0.26 -7.01 4.05 -181.38 -0.74 -7.75 16 16 C -0.09 -3.08 1.97 -10.72 -0.02 -3.11 16 17 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 18 C -0.10 -3.06 4.85 30.62 0.15 -2.91 16 19 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 20 C 0.17 8.48 5.30 86.36 0.46 8.94 16 21 N -0.61 -30.99 2.99 -699.08 -2.09 -33.08 16 22 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 23 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 24 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 25 N -0.94 -55.98 11.20 21.65 0.24 -55.73 16 26 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 29 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 30 C 0.16 6.96 5.56 86.36 0.48 7.44 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.09 1.88 6.40 -2.38 -0.02 1.87 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.41 12.62 6.42 -92.70 -0.60 12.02 16 35 H 0.21 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.21 -0.75 8.06 -2.91 -0.02 -0.78 16 38 H 0.24 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 2.22 6.36 -2.39 -0.02 2.20 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.04 1.85 7.45 -2.38 -0.02 1.83 16 47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -80.15 380.68 2.67 -77.48 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.40 Total: 21.51 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.64 Total: 20.53 kcal Atomic # 7 Polarization: -136.49 SS G_CDS: -7.32 Total: -143.82 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.08 Total: -21.66 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -80.15 2.67 -77.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025553010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.686 kcal (2) G-P(sol) polarization free energy of solvation -80.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds