Wall clock time and date at job start Wed Apr 1 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49599 * 2 1 4 4 C 1.53187 * 109.50137 * 120.06795 * 2 1 3 5 5 N 1.46928 * 108.77731 * 174.61859 * 4 2 1 6 6 C 1.34776 * 120.62894 * 126.36600 * 5 4 2 7 7 O 1.21586 * 120.00323 * 4.32292 * 6 5 4 8 8 C 1.47530 * 119.99859 * 184.31870 * 6 5 4 9 9 C 1.39254 * 120.24569 * 304.42353 * 8 6 5 10 10 C 1.38439 * 120.27509 * 180.27896 * 9 8 6 11 11 C 1.37646 * 120.80049 * 359.46961 * 10 9 8 12 12 C 1.40080 * 120.14916 * 0.52851 * 11 10 9 13 13 N 1.35402 * 133.03343 * 179.76863 * 12 11 10 14 14 N 1.28664 * 110.10220 * 179.97438 * 13 12 11 15 15 N 1.40243 * 109.43480 * 359.97438 * 14 13 12 16 16 C 1.46502 * 126.66354 * 180.02562 * 15 14 13 17 17 C 1.36979 * 106.67549 * 0.02562 * 15 14 13 18 18 C 1.46916 * 118.73694 * 306.64046 * 5 4 2 19 19 C 1.52762 * 109.01135 * 53.30930 * 18 5 4 20 20 C 1.53039 * 109.52241 * 239.92179 * 2 1 3 21 21 H 1.09010 * 109.45700 * 298.68612 * 20 2 1 22 22 N 1.46506 * 109.46351 * 58.64308 * 20 2 1 23 23 C 1.36936 * 119.99965 * 205.00377 * 22 20 2 24 24 H 1.07995 * 120.00213 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99446 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00342 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99827 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47430 * 89.99371 * 27 25 23 29 29 H 1.48500 * 109.47284 * 209.99995 * 27 25 23 30 30 H 1.48500 * 109.46887 * 329.99538 * 27 25 23 31 31 H 1.09005 * 109.46648 * 299.93168 * 1 2 3 32 32 H 1.08994 * 109.47667 * 59.93674 * 1 2 3 33 33 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58673 * 54.82581 * 4 2 1 35 35 H 1.09002 * 109.58536 * 294.40437 * 4 2 1 36 36 H 1.07997 * 119.85882 * 359.97438 * 9 8 6 37 37 H 1.08000 * 119.60356 * 179.74484 * 10 9 8 38 38 H 1.08001 * 119.92346 * 180.26044 * 11 10 9 39 39 H 1.09008 * 109.46591 * 264.39264 * 16 15 14 40 40 H 1.09001 * 109.47411 * 24.39107 * 16 15 14 41 41 H 1.09002 * 109.47619 * 144.39209 * 16 15 14 42 42 H 1.08994 * 109.59063 * 173.14587 * 18 5 4 43 43 H 1.09004 * 109.59240 * 293.56829 * 18 5 4 44 44 H 1.08998 * 109.57125 * 185.55367 * 19 18 5 45 45 H 1.09003 * 109.38571 * 65.51166 * 19 18 5 46 46 H 0.96997 * 119.99051 * 24.99831 * 22 20 2 47 47 H 0.96999 * 120.00422 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5048 -0.8281 1.1700 6 6 4.2808 -0.3841 2.1785 7 8 3.7704 0.0363 3.1988 8 6 5.7498 -0.4082 2.0444 9 6 6.4073 -1.5985 1.7441 10 6 7.7863 -1.6230 1.6239 11 6 8.5285 -0.4753 1.7872 12 6 7.8936 0.7361 2.0899 13 7 8.3529 1.9915 2.3051 14 7 7.3710 2.7852 2.5527 15 7 6.1677 2.0660 2.5112 16 6 4.8218 2.5989 2.7369 17 6 6.4952 0.7685 2.2187 18 6 4.1062 -1.4203 -0.0325 19 6 3.5715 -0.6942 -1.2655 20 6 2.0414 -0.7229 -1.2482 21 1 1.6978 -1.7573 -1.2351 22 7 1.5271 -0.0531 -2.4454 23 6 1.3976 -0.7496 -3.6172 24 1 1.6749 -1.7925 -3.6591 25 6 0.9107 -0.1148 -4.7516 26 7 0.5732 1.1563 -4.7008 27 14 0.7333 -1.0650 -6.3501 28 1 -0.6183 -1.6766 -6.4150 29 1 0.9141 -0.1406 -7.4982 30 1 1.7633 -2.1332 -6.4078 31 1 -0.3633 0.5128 0.8907 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6057 -1.7215 1.2981 35 1 1.7634 -0.1577 2.1389 36 1 5.8395 -2.5072 1.6093 37 1 8.2854 -2.5529 1.3947 38 1 9.6032 -0.5098 1.6861 39 1 4.5364 2.4365 3.7763 40 1 4.8129 3.6672 2.5204 41 1 4.1148 2.0896 2.0821 42 1 5.1901 -1.3143 0.0109 43 1 3.8425 -2.4764 -0.0908 44 1 3.9344 -1.1887 -2.1665 45 1 3.9160 0.3399 -1.2542 46 1 1.2783 0.8836 -2.4077 47 1 0.2333 1.6000 -5.4935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036332935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:04 Heat of formation + Delta-G solvation = 96.016039 kcal Electronic energy + Delta-G solvation = -30784.447062 eV Core-core repulsion = 26776.679558 eV Total energy + Delta-G solvation = -4007.767504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38710 -40.35399 -38.01259 -37.50637 -34.78289 -34.73340 -33.03981 -31.61710 -31.13109 -30.57366 -29.41575 -27.75268 -26.54671 -25.40642 -24.36873 -23.06059 -22.90219 -22.03520 -21.71559 -20.02398 -19.19181 -18.32298 -17.34962 -17.17633 -16.85050 -16.34368 -15.96343 -15.86005 -15.21369 -15.00582 -14.48004 -14.30236 -13.97653 -13.85038 -13.66666 -13.41853 -13.33165 -13.07934 -12.77773 -12.57393 -12.52255 -12.36400 -12.20920 -11.98491 -11.76837 -11.68352 -11.32388 -11.27338 -11.00214 -10.89304 -10.88201 -10.73137 -10.52335 -10.26138 -10.00810 -9.82904 -9.71706 -9.16815 -8.96787 -8.72876 -8.51981 -7.04327 -5.84405 -3.13598 0.01538 0.95839 1.78628 1.88504 2.42925 2.84846 3.28228 3.37615 3.42966 3.44901 3.76457 4.15003 4.25235 4.39588 4.50891 4.52904 4.80348 4.92506 4.96650 5.03513 5.11447 5.14549 5.22667 5.25847 5.34987 5.41081 5.44533 5.51050 5.57316 5.59137 5.67591 5.81214 5.83589 5.91233 5.95361 6.03220 6.18667 6.21018 6.25446 6.32805 6.33443 6.38763 6.49465 6.70492 6.81231 6.94123 7.26319 7.61835 7.74843 7.92883 8.33496 9.45200 10.01618 10.36248 11.37971 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003067 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.477687 B = 9126.843110 C = 9553.204686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.119 3.881 5 N -0.594 5.594 6 C 0.559 3.441 7 O -0.541 6.541 8 C -0.126 4.126 9 C -0.035 4.035 10 C -0.141 4.141 11 C -0.014 4.014 12 C -0.024 4.024 13 N -0.218 5.218 14 N -0.005 5.005 15 N -0.384 5.384 16 C 0.102 3.898 17 C 0.124 3.876 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -5.571 15.368 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.325 5.325 6 C 0.346 3.654 7 O -0.420 6.420 8 C -0.133 4.133 9 C -0.057 4.057 10 C -0.162 4.162 11 C -0.036 4.036 12 C -0.148 4.148 13 N -0.097 5.097 14 N 0.015 4.985 15 N -0.177 5.177 16 C -0.038 4.038 17 C 0.000 4.000 18 C -0.026 4.026 19 C -0.193 4.193 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.307 -4.003 15.980 19.981 hybrid contribution -0.780 -0.977 -1.235 1.758 sum 10.527 -4.980 14.745 18.789 Atomic orbital electron populations 1.21657 0.93882 1.01909 1.01921 1.21751 0.96753 0.99894 0.94596 0.91416 1.21795 0.77764 1.01292 0.99436 1.48145 1.07281 1.59390 1.17679 1.18101 0.85989 0.77877 0.83405 1.90788 1.74872 1.47794 1.28540 1.18785 0.93307 0.91902 1.09336 1.21345 0.94928 0.96234 0.93199 1.20925 0.93238 0.98607 1.03397 1.20616 1.00699 0.88555 0.93742 1.19893 0.90061 0.93916 1.10906 1.74865 1.22208 1.00244 1.12380 1.81652 0.84867 1.16684 1.15293 1.50057 1.08710 1.05119 1.53783 1.22164 0.76522 1.00953 1.04210 1.18940 0.94809 0.86218 1.00012 1.22053 0.98404 0.97571 0.84534 1.22619 1.00437 1.00394 0.95875 1.20196 0.90268 0.95769 0.86416 0.93287 1.42398 1.76459 1.11430 1.05744 1.19202 1.36171 0.94126 0.87678 0.91201 1.24726 1.01923 0.95983 0.98060 1.69651 1.49818 1.09506 1.28971 0.86229 0.77806 0.78705 0.83660 1.21722 1.21814 1.20766 0.93790 0.90659 0.92934 0.91107 0.89248 0.83782 0.83702 0.83904 0.89106 0.88537 0.89195 0.89863 0.90940 0.90320 0.92423 0.78241 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 2 C -0.11 -1.64 2.46 -90.50 -0.22 -1.86 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.52 5.71 -3.71 -0.02 1.50 16 5 N -0.59 -7.42 2.98 -174.27 -0.52 -7.93 16 6 C 0.56 7.39 5.76 -12.47 -0.07 7.32 16 7 O -0.54 -8.31 14.46 5.29 0.08 -8.24 16 8 C -0.13 -1.50 4.84 -104.93 -0.51 -2.01 16 9 C -0.03 -0.30 7.45 -39.13 -0.29 -0.60 16 10 C -0.14 -1.01 9.98 -39.72 -0.40 -1.41 16 11 C -0.01 -0.12 10.09 -39.11 -0.39 -0.52 16 12 C -0.02 -0.30 7.26 -84.76 -0.62 -0.92 16 13 N -0.22 -3.13 12.40 32.15 0.40 -2.73 16 14 N 0.00 -0.07 13.72 60.35 0.83 0.76 16 15 N -0.38 -5.25 4.10 -65.27 -0.27 -5.52 16 16 C 0.10 1.16 9.95 59.85 0.60 1.76 16 17 C 0.12 1.66 6.85 -83.92 -0.57 1.08 16 18 C 0.10 1.14 5.56 -3.94 -0.02 1.11 16 19 C -0.15 -2.36 5.64 -26.83 -0.15 -2.52 16 20 C 0.18 3.22 2.20 -67.89 -0.15 3.07 16 21 H 0.05 0.88 8.08 -51.92 -0.42 0.46 16 22 N -0.72 -16.50 4.41 -53.38 -0.24 -16.73 16 23 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 27 Si 0.90 21.51 29.55 -169.99 -5.02 16.48 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.35 7.37 -51.93 -0.38 0.97 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.16 7.03 -51.93 -0.36 0.80 16 36 H 0.14 0.94 7.48 -52.49 -0.39 0.55 16 37 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.09 0.99 7.96 -51.92 -0.41 0.57 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.09 6.38 -51.93 -0.33 0.76 16 42 H 0.08 0.86 4.82 -51.93 -0.25 0.61 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.38 9.57 7.50 -40.82 -0.31 9.26 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -31.91 378.21 -7.69 -39.59 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.63 Total: 7.37 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.73 Total: -2.44 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.93 Total: -58.47 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.91 -7.69 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036332935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.608 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds