Wall clock time and date at job start Wed Apr 1 2020 02:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49599 * 2 1 4 4 C 1.53187 * 109.50137 * 120.06795 * 2 1 3 5 5 N 1.46928 * 108.77731 * 174.61859 * 4 2 1 6 6 C 1.34776 * 120.62894 * 126.36600 * 5 4 2 7 7 O 1.21586 * 120.00323 * 4.32292 * 6 5 4 8 8 C 1.47530 * 119.99859 * 184.31870 * 6 5 4 9 9 C 1.39254 * 120.24569 * 304.42353 * 8 6 5 10 10 C 1.38439 * 120.27509 * 180.27896 * 9 8 6 11 11 C 1.37646 * 120.80049 * 359.46961 * 10 9 8 12 12 C 1.40080 * 120.14916 * 0.52851 * 11 10 9 13 13 N 1.35402 * 133.03343 * 179.76863 * 12 11 10 14 14 N 1.28664 * 110.10220 * 179.97438 * 13 12 11 15 15 N 1.40243 * 109.43480 * 359.97438 * 14 13 12 16 16 C 1.46502 * 126.66354 * 180.02562 * 15 14 13 17 17 C 1.36979 * 106.67549 * 0.02562 * 15 14 13 18 18 C 1.46916 * 118.73694 * 306.64046 * 5 4 2 19 19 C 1.52762 * 109.01135 * 53.30930 * 18 5 4 20 20 C 1.53039 * 109.52241 * 239.92179 * 2 1 3 21 21 H 1.09010 * 109.45700 * 298.68612 * 20 2 1 22 22 N 1.46506 * 109.46351 * 58.64308 * 20 2 1 23 23 C 1.36936 * 119.99965 * 205.00377 * 22 20 2 24 24 H 1.07995 * 120.00213 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99446 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00342 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99827 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47430 * 89.99371 * 27 25 23 29 29 H 1.48500 * 109.47284 * 209.99995 * 27 25 23 30 30 H 1.48500 * 109.46887 * 329.99538 * 27 25 23 31 31 H 1.09005 * 109.46648 * 299.93168 * 1 2 3 32 32 H 1.08994 * 109.47667 * 59.93674 * 1 2 3 33 33 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58673 * 54.82581 * 4 2 1 35 35 H 1.09002 * 109.58536 * 294.40437 * 4 2 1 36 36 H 1.07997 * 119.85882 * 359.97438 * 9 8 6 37 37 H 1.08000 * 119.60356 * 179.74484 * 10 9 8 38 38 H 1.08001 * 119.92346 * 180.26044 * 11 10 9 39 39 H 1.09008 * 109.46591 * 264.39264 * 16 15 14 40 40 H 1.09001 * 109.47411 * 24.39107 * 16 15 14 41 41 H 1.09002 * 109.47619 * 144.39209 * 16 15 14 42 42 H 1.08994 * 109.59063 * 173.14587 * 18 5 4 43 43 H 1.09004 * 109.59240 * 293.56829 * 18 5 4 44 44 H 1.08998 * 109.57125 * 185.55367 * 19 18 5 45 45 H 1.09003 * 109.38571 * 65.51166 * 19 18 5 46 46 H 0.96997 * 119.99051 * 24.99831 * 22 20 2 47 47 H 0.96999 * 120.00422 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5048 -0.8281 1.1700 6 6 4.2808 -0.3841 2.1785 7 8 3.7704 0.0363 3.1988 8 6 5.7498 -0.4082 2.0444 9 6 6.4073 -1.5985 1.7441 10 6 7.7863 -1.6230 1.6239 11 6 8.5285 -0.4753 1.7872 12 6 7.8936 0.7361 2.0899 13 7 8.3529 1.9915 2.3051 14 7 7.3710 2.7852 2.5527 15 7 6.1677 2.0660 2.5112 16 6 4.8218 2.5989 2.7369 17 6 6.4952 0.7685 2.2187 18 6 4.1062 -1.4203 -0.0325 19 6 3.5715 -0.6942 -1.2655 20 6 2.0414 -0.7229 -1.2482 21 1 1.6978 -1.7573 -1.2351 22 7 1.5271 -0.0531 -2.4454 23 6 1.3976 -0.7496 -3.6172 24 1 1.6749 -1.7925 -3.6591 25 6 0.9107 -0.1148 -4.7516 26 7 0.5732 1.1563 -4.7008 27 14 0.7333 -1.0650 -6.3501 28 1 -0.6183 -1.6766 -6.4150 29 1 0.9141 -0.1406 -7.4982 30 1 1.7633 -2.1332 -6.4078 31 1 -0.3633 0.5128 0.8907 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6057 -1.7215 1.2981 35 1 1.7634 -0.1577 2.1389 36 1 5.8395 -2.5072 1.6093 37 1 8.2854 -2.5529 1.3947 38 1 9.6032 -0.5098 1.6861 39 1 4.5364 2.4365 3.7763 40 1 4.8129 3.6672 2.5204 41 1 4.1148 2.0896 2.0821 42 1 5.1901 -1.3143 0.0109 43 1 3.8425 -2.4764 -0.0908 44 1 3.9344 -1.1887 -2.1665 45 1 3.9160 0.3399 -1.2542 46 1 1.2783 0.8836 -2.4077 47 1 0.2333 1.6000 -5.4935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036332935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:03 Heat of formation + Delta-G solvation = 74.981568 kcal Electronic energy + Delta-G solvation = -30785.359185 eV Core-core repulsion = 26776.679558 eV Total energy + Delta-G solvation = -4008.679627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.28329 -41.39773 -39.17560 -38.37295 -36.20727 -35.68967 -34.50873 -33.10320 -31.99403 -31.39666 -31.01481 -28.68929 -27.64156 -26.82662 -25.49987 -24.38407 -23.78893 -23.10606 -22.94792 -21.23422 -20.26620 -19.21609 -19.02772 -18.23983 -17.84704 -17.27205 -16.94066 -16.84972 -16.63886 -16.05422 -15.69030 -15.48117 -15.34646 -15.16364 -14.86722 -14.57622 -14.34117 -14.18525 -13.93353 -13.75851 -13.46115 -13.26629 -13.17168 -13.05513 -12.91705 -12.84820 -12.80613 -12.66342 -12.46009 -12.26105 -12.14102 -12.04222 -11.84291 -11.77225 -11.66378 -11.16184 -11.03885 -10.83320 -9.98981 -9.77006 -9.37442 -8.95543 -7.90743 -5.18153 -0.80036 0.16327 0.87884 0.99924 1.44445 1.49736 1.50101 1.58188 1.89380 2.50925 2.58751 2.92403 3.28180 3.37039 3.43427 3.62634 3.74628 3.79703 3.83684 4.00170 4.08821 4.11420 4.12876 4.25692 4.29246 4.38215 4.43272 4.48244 4.59199 4.65042 4.69423 4.77799 4.80273 4.81937 4.83864 4.97018 5.01774 5.15502 5.17463 5.22950 5.30036 5.39226 5.40723 5.49303 5.56644 5.61520 5.64063 6.25890 6.30861 6.79231 6.93682 7.37389 8.13861 8.36054 9.32917 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.003067 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.477687 B = 9126.843110 C = 9553.204686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.049 0.951 4 C 0.127 3.873 5 N -0.593 5.593 6 C 0.562 3.438 7 O -0.568 6.568 8 C -0.154 4.154 9 C -0.018 4.018 10 C -0.122 4.122 11 C -0.013 4.013 12 C -0.044 4.044 13 N -0.235 5.235 14 N -0.036 5.036 15 N -0.392 5.392 16 C 0.105 3.895 17 C 0.102 3.898 18 C 0.107 3.893 19 C -0.143 4.143 20 C 0.179 3.821 21 H 0.054 0.946 22 N -0.733 5.733 23 C -0.229 4.229 24 H 0.081 0.919 25 C -0.076 4.076 26 N -0.972 5.972 27 Si 0.966 3.034 28 H -0.290 1.290 29 H -0.303 1.303 30 H -0.266 1.266 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.176 0.824 37 H 0.192 0.808 38 H 0.170 0.830 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.369 0.631 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 -9.324 16.023 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.005 3.995 5 N -0.324 5.324 6 C 0.351 3.649 7 O -0.448 6.448 8 C -0.162 4.162 9 C -0.039 4.039 10 C -0.142 4.142 11 C -0.035 4.035 12 C -0.169 4.169 13 N -0.113 5.113 14 N -0.015 5.015 15 N -0.186 5.186 16 C -0.036 4.036 17 C -0.021 4.021 18 C -0.016 4.016 19 C -0.184 4.184 20 C 0.070 3.930 21 H 0.072 0.928 22 N -0.371 5.371 23 C -0.361 4.361 24 H 0.098 0.902 25 C -0.268 4.268 26 N -0.624 5.624 27 Si 0.796 3.204 28 H -0.218 1.218 29 H -0.230 1.230 30 H -0.191 1.191 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.193 0.807 37 H 0.210 0.790 38 H 0.188 0.812 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.200 0.800 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.924 -7.795 16.670 22.487 hybrid contribution -1.223 0.087 -1.377 1.844 sum 11.701 -7.708 15.293 20.741 Atomic orbital electron populations 1.21571 0.93850 1.02186 1.01157 1.21612 0.96725 0.98947 0.94720 0.93243 1.21684 0.78212 1.01939 0.97656 1.48148 1.07052 1.59394 1.17771 1.18296 0.86629 0.77005 0.82982 1.90770 1.75549 1.48771 1.29724 1.18848 0.92469 0.92731 1.12141 1.21866 0.95962 0.95832 0.90273 1.21462 0.92475 0.99570 1.00741 1.21123 1.02343 0.87563 0.92443 1.20427 0.90183 0.94506 1.11813 1.74777 1.22580 1.01278 1.12671 1.81575 0.85395 1.17330 1.17206 1.50202 1.08815 1.05634 1.53988 1.22169 0.75795 1.01712 1.03910 1.19348 0.95595 0.86451 1.00703 1.22071 0.99261 0.98242 0.81978 1.22403 0.98568 0.99593 0.97798 1.20457 0.91481 0.95614 0.85399 0.92777 1.42611 1.76837 1.10862 1.06820 1.19616 1.33552 0.94498 0.88415 0.90156 1.25470 1.03260 0.96830 1.01277 1.69815 1.52145 1.11200 1.29193 0.85244 0.77894 0.77536 0.79747 1.21755 1.23023 1.19064 0.91641 0.94317 0.92050 0.89038 0.89353 0.80684 0.79040 0.81235 0.89033 0.87065 0.90299 0.87969 0.87932 0.91284 0.94762 0.79956 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.03 71.98 0.65 -3.19 16 2 C -0.10 -2.94 2.46 -10.72 -0.03 -2.96 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.13 2.99 5.71 86.36 0.49 3.49 16 5 N -0.59 -13.38 2.98 -823.53 -2.45 -15.83 16 6 C 0.56 13.91 5.76 86.69 0.50 14.41 16 7 O -0.57 -17.00 14.46 -3.99 -0.06 -17.06 16 8 C -0.15 -3.35 4.84 -20.06 -0.10 -3.45 16 9 C -0.02 -0.22 7.45 22.56 0.17 -0.06 16 10 C -0.12 -1.10 9.98 22.18 0.22 -0.88 16 11 C -0.01 -0.18 10.09 22.58 0.23 0.04 16 12 C -0.04 -1.08 7.26 39.58 0.29 -0.79 16 13 N -0.24 -6.82 12.40 -52.19 -0.65 -7.46 16 14 N -0.04 -1.08 13.72 37.02 0.51 -0.57 16 15 N -0.39 -11.04 4.10 -360.42 -1.48 -12.51 16 16 C 0.10 2.48 9.95 127.77 1.27 3.76 16 17 C 0.10 2.68 6.85 39.40 0.27 2.95 16 18 C 0.11 2.12 5.56 86.22 0.48 2.60 16 19 C -0.14 -4.25 5.64 30.53 0.17 -4.07 16 20 C 0.18 6.11 2.20 45.02 0.10 6.21 16 21 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 22 N -0.73 -34.03 4.41 -322.80 -1.42 -35.45 16 23 C -0.23 -11.81 9.93 84.03 0.83 -10.97 16 24 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 26 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 27 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 30 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.04 1.42 7.37 -2.39 -0.02 1.41 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.16 7.03 -2.39 -0.02 2.15 16 36 H 0.18 1.16 7.48 -2.91 -0.02 1.14 16 37 H 0.19 0.05 8.06 -2.91 -0.02 0.02 16 38 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.09 2.10 7.96 -2.38 -0.02 2.08 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 2.02 6.38 -2.39 -0.02 2.00 16 42 H 0.10 1.69 4.82 -2.39 -0.01 1.68 16 43 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.37 19.15 7.50 -92.71 -0.70 18.46 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -73.41 378.21 3.08 -70.32 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.31 Total: 26.63 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.02 Total: 3.35 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.21 Total: -129.75 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -73.41 3.08 -70.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036332935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.303 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds