Wall clock time and date at job start Wed Apr 1 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.07995 * 120.00281 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47464 * 119.99742 * 10 8 6 13 13 H 1.48496 * 109.47378 * 240.00268 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00494 * 81.01141 * 15 14 5 17 17 N 1.46494 * 111.00587 * 204.82382 * 15 14 5 18 18 C 1.34787 * 120.00004 * 273.54798 * 17 15 14 19 19 O 1.21641 * 119.99620 * 359.97438 * 18 17 15 20 20 C 1.47109 * 119.99776 * 179.97438 * 18 17 15 21 21 C 1.36689 * 126.96185 * 0.02733 * 20 18 17 22 22 N 1.34642 * 108.66416 * 180.02562 * 21 20 18 23 23 H 0.97005 * 124.74886 * 180.02562 * 22 21 20 24 24 C 1.36448 * 110.50032 * 359.97438 * 22 21 20 25 25 C 1.35609 * 108.67043 * 359.71496 * 24 22 21 26 26 C 1.48521 * 126.95808 * 180.30454 * 25 24 22 27 27 C 1.40815 * 126.21466 * 129.84829 * 26 25 24 28 28 N 1.30703 * 108.12839 * 179.81007 * 27 26 25 29 29 N 1.40016 * 108.51371 * 0.44566 * 28 27 26 30 30 C 1.46501 * 125.90780 * 179.74812 * 29 28 27 31 31 C 1.34974 * 108.18387 * 359.70977 * 29 28 27 32 32 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 33 33 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 34 34 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 35 35 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 36 36 H 1.08999 * 109.88411 * 99.95540 * 4 2 1 37 37 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 38 38 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 39 39 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 40 40 H 0.96999 * 120.00536 * 93.54386 * 17 15 14 41 41 H 1.08006 * 125.67043 * 0.02562 * 21 20 18 42 42 H 1.07997 * 125.66456 * 180.02562 * 24 22 21 43 43 H 1.07999 * 125.93556 * 359.97438 * 27 26 25 44 44 H 1.08996 * 109.47420 * 269.95692 * 30 29 28 45 45 H 1.09005 * 109.47167 * 29.95835 * 30 29 28 46 46 H 1.09006 * 109.47161 * 149.95557 * 30 29 28 47 47 H 1.07996 * 126.20716 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 3.7759 -2.5515 -2.5353 8 6 5.0977 -3.0518 -0.9245 9 7 5.3893 -2.8615 0.3449 10 14 6.1403 -4.2055 -1.9595 11 1 5.6068 -4.2461 -3.3449 12 1 7.5430 -3.7186 -1.9829 13 1 6.0994 -5.5694 -1.3738 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4468 -1.6529 1.4384 17 7 2.2174 0.0720 2.3890 18 6 2.3108 -0.4708 3.6192 19 8 2.2798 -1.6792 3.7546 20 6 2.4504 0.3982 4.7979 21 6 2.5003 1.7642 4.8107 22 7 2.6330 2.1786 6.0849 23 1 2.6913 3.1066 6.3613 24 6 2.6729 1.1105 6.9331 25 6 2.5581 -0.0272 6.2041 26 6 2.5468 -1.4203 6.7190 27 6 1.5997 -2.4147 6.4076 28 7 1.9286 -3.5048 7.0493 29 7 3.0837 -3.2486 7.7981 30 6 3.7766 -4.2063 8.6635 31 6 3.4488 -1.9670 7.5839 32 1 -0.3634 0.4643 0.9168 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0563 35 1 1.3191 -1.4773 -1.5770 36 1 2.3776 -0.1016 -1.9963 37 1 6.1459 -3.3201 0.7426 38 1 4.1929 -0.4409 0.8030 39 1 3.8001 -2.1352 1.2232 40 1 2.2419 1.0357 2.2811 41 1 2.4427 2.4046 3.9430 42 1 2.7737 1.1627 8.0071 43 1 0.7507 -2.2978 5.7504 44 1 3.3684 -4.1459 9.6723 45 1 3.6365 -5.2150 8.2746 46 1 4.8406 -3.9707 8.6873 47 1 4.3004 -1.4651 8.0188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079686239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:05 Heat of formation + Delta-G solvation = 123.199398 kcal Electronic energy + Delta-G solvation = -29950.769085 eV Core-core repulsion = 25944.180340 eV Total energy + Delta-G solvation = -4006.588745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23502 -40.48663 -38.87469 -37.12419 -33.73653 -33.28888 -32.50391 -31.58168 -30.26948 -30.05102 -28.45691 -27.34895 -26.34372 -25.53877 -23.79651 -22.42200 -21.78982 -20.82310 -20.09692 -19.89709 -19.28324 -18.72395 -18.35684 -16.78746 -16.37397 -15.90194 -15.48789 -15.24512 -14.83788 -14.54167 -14.20050 -13.89259 -13.70817 -13.60801 -13.50569 -13.25842 -12.87848 -12.75114 -12.74703 -12.57411 -12.42407 -12.33440 -12.10687 -11.81869 -11.59810 -11.11153 -10.99049 -10.72275 -10.51603 -10.47260 -10.24094 -9.87176 -9.67242 -9.59255 -9.31579 -9.15180 -8.96566 -8.55018 -8.43643 -8.15510 -7.67847 -6.72573 -5.51983 -2.96238 1.92414 1.98691 2.43602 2.71321 3.17692 3.32761 3.47121 3.51701 3.55135 3.81452 4.09368 4.58276 4.64791 4.89272 4.98006 5.07837 5.10636 5.18475 5.24140 5.34705 5.40460 5.42986 5.54522 5.60968 5.65928 5.83214 5.87068 5.94506 5.99170 6.07032 6.15501 6.26316 6.30757 6.39648 6.48764 6.62859 6.74598 6.76804 6.87306 6.97641 7.00526 7.14415 7.19309 7.40152 7.64575 7.72688 7.98582 8.02442 8.22455 8.52070 8.99330 9.32324 9.93556 10.57633 11.49966 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.003462 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.921621 B = 8085.320361 C = 9918.820561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.141 3.859 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.915 5.915 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.126 3.874 16 H 0.088 0.912 17 N -0.716 5.716 18 C 0.580 3.420 19 O -0.525 6.525 20 C -0.204 4.204 21 C 0.038 3.962 22 N -0.551 5.551 23 H 0.415 0.585 24 C -0.022 4.022 25 C -0.030 4.030 26 C -0.155 4.155 27 C 0.100 3.900 28 N -0.306 5.306 29 N -0.382 5.382 30 C 0.106 3.894 31 C 0.056 3.944 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.022 0.978 37 H 0.251 0.749 38 H 0.011 0.989 39 H 0.112 0.888 40 H 0.388 0.612 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 12.376 17.464 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.015 3.985 5 N -0.330 5.330 6 C -0.354 4.354 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.563 5.563 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.367 5.367 18 C 0.368 3.632 19 O -0.401 6.401 20 C -0.214 4.214 21 C -0.097 4.097 22 N -0.145 5.145 23 H 0.252 0.748 24 C -0.150 4.150 25 C -0.038 4.038 26 C -0.167 4.167 27 C -0.087 4.087 28 N -0.126 5.126 29 N -0.164 5.164 30 C -0.036 4.036 31 C -0.090 4.090 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.130 0.870 40 H 0.221 0.779 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.196 0.804 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.778 10.097 17.956 21.686 hybrid contribution 1.088 1.344 -0.762 1.890 sum -5.690 11.440 17.194 21.421 Atomic orbital electron populations 1.21736 0.95044 1.01875 1.00768 1.22407 0.95105 0.99066 0.96481 0.91017 1.21377 0.90278 0.93171 0.93716 1.44475 1.30665 1.50547 1.07351 1.19088 1.06124 1.17258 0.92903 0.90399 1.24818 0.98847 1.00576 0.96328 1.69844 1.29836 1.45959 1.10627 0.86034 0.80045 0.80584 0.79044 1.20531 1.21855 1.21744 1.22220 0.89540 1.01134 0.84813 1.22577 1.00699 0.92249 0.82446 0.89369 1.45720 1.75462 1.09345 1.06132 1.17304 0.76551 0.87532 0.81862 1.90825 1.49325 1.14167 1.85790 1.20582 1.15412 0.91917 0.93536 1.21834 1.05469 0.94976 0.87448 1.41356 1.57958 1.08936 1.06255 0.74839 1.21693 1.12216 0.85436 0.95680 1.18264 1.05209 0.89997 0.90320 1.17982 0.99577 0.93967 1.05169 1.23803 0.99220 0.89195 0.96483 1.77260 1.00486 1.23251 1.11610 1.48270 1.22086 1.09081 1.36981 1.21760 0.96102 0.93034 0.92681 1.22382 1.00195 0.85889 1.00560 0.93051 0.93054 0.92490 0.95546 0.96024 0.93806 0.97144 0.87017 0.77944 0.81274 0.81550 0.80380 0.91224 0.89434 0.89809 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.17 37.16 0.34 -1.58 16 2 C -0.11 -1.91 3.16 -88.79 -0.28 -2.19 16 3 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 4 C 0.14 3.00 6.86 -2.92 -0.02 2.98 16 5 N -0.60 -16.16 3.40 -169.86 -0.58 -16.74 16 6 C -0.23 -6.55 10.28 -15.06 -0.15 -6.71 16 7 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.91 -28.45 10.09 55.49 0.56 -27.89 16 10 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 C 0.15 3.86 5.58 -2.53 -0.01 3.85 16 15 C 0.13 2.54 2.76 -65.79 -0.18 2.36 16 16 H 0.09 1.99 7.64 -51.92 -0.40 1.59 16 17 N -0.72 -12.02 5.22 -52.90 -0.28 -12.29 16 18 C 0.58 10.72 7.80 -12.66 -0.10 10.62 16 19 O -0.53 -12.04 14.37 5.24 0.08 -11.97 16 20 C -0.20 -2.98 6.30 -103.17 -0.65 -3.63 16 21 C 0.04 0.38 11.38 -16.88 -0.19 0.19 16 22 N -0.55 -4.22 5.89 -12.61 -0.07 -4.29 16 23 H 0.42 1.57 8.96 -40.82 -0.37 1.20 16 24 C -0.02 -0.21 11.87 -16.44 -0.20 -0.41 16 25 C -0.03 -0.41 6.18 -102.91 -0.64 -1.05 16 26 C -0.15 -2.37 5.47 -105.35 -0.58 -2.95 16 27 C 0.10 1.71 10.40 -17.06 -0.18 1.53 16 28 N -0.31 -5.27 12.54 30.80 0.39 -4.89 16 29 N -0.38 -5.33 4.01 -67.86 -0.27 -5.60 16 30 C 0.11 0.95 11.46 59.85 0.69 1.63 16 31 C 0.06 0.74 11.45 -16.83 -0.19 0.54 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.03 0.56 7.78 -51.93 -0.40 0.16 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 3.44 5.86 -51.93 -0.30 3.14 16 40 H 0.39 5.06 7.45 -40.82 -0.30 4.76 16 41 H 0.17 1.16 7.44 -52.48 -0.39 0.77 16 42 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.18 3.00 7.86 -52.49 -0.41 2.59 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -39.73 390.32 -8.52 -48.25 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.76 Total: 6.71 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.44 Total: 4.81 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -0.25 Total: -71.71 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.73 -8.52 -48.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079686239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.453 kcal (2) G-P(sol) polarization free energy of solvation -39.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds