Wall clock time and date at job start Wed Apr 1 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.64732 * 2 1 4 4 C 1.54327 * 110.86771 * 236.75694 * 2 1 3 5 5 N 1.47029 * 107.26790 * 219.37342 * 4 2 1 6 6 C 1.36939 * 125.64542 * 178.99180 * 5 4 2 7 7 H 1.08001 * 119.99891 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00452 * 359.96960 * 6 5 4 9 9 N 1.31623 * 119.99639 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00533 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47193 * 89.99782 * 10 8 6 12 12 H 1.48496 * 109.47198 * 210.00144 * 10 8 6 13 13 H 1.48500 * 109.46476 * 329.99773 * 10 8 6 14 14 C 1.47418 * 108.70495 * 358.93814 * 5 4 2 15 15 C 1.54915 * 104.83107 * 24.13113 * 14 5 4 16 16 H 1.09002 * 111.00539 * 81.06145 * 15 14 5 17 17 C 1.53001 * 111.03575 * 204.90180 * 15 14 5 18 18 N 1.46501 * 109.46940 * 290.39053 * 17 15 14 19 19 C 1.34776 * 120.00110 * 180.02562 * 18 17 15 20 20 O 1.21579 * 119.99766 * 0.02562 * 19 18 17 21 21 C 1.47683 * 120.00287 * 179.97438 * 19 18 17 22 22 C 1.40186 * 120.40585 * 359.72683 * 21 19 18 23 23 N 1.31190 * 121.36905 * 179.77376 * 22 21 19 24 24 C 1.32930 * 121.84617 * 0.47935 * 23 22 21 25 25 C 1.41070 * 120.20489 * 359.78450 * 24 23 22 26 26 C 1.45975 * 106.43303 * 179.97438 * 25 24 23 27 27 N 1.30196 * 107.58760 * 0.02562 * 26 25 24 28 28 N 1.36635 * 133.26922 * 179.79574 * 24 23 22 29 29 C 1.46497 * 125.33716 * 0.02562 * 28 24 23 30 30 C 1.39512 * 120.41008 * 179.97438 * 21 19 18 31 31 H 1.08997 * 109.46655 * 296.85759 * 1 2 3 32 32 H 1.09001 * 109.47237 * 56.85205 * 1 2 3 33 33 H 1.08994 * 109.47195 * 176.85065 * 1 2 3 34 34 H 1.08993 * 109.88730 * 338.78933 * 4 2 1 35 35 H 1.08996 * 109.88624 * 99.80658 * 4 2 1 36 36 H 0.97001 * 119.99838 * 179.97438 * 9 8 6 37 37 H 1.08995 * 110.37279 * 265.29528 * 14 5 4 38 38 H 1.08997 * 110.36990 * 142.96726 * 14 5 4 39 39 H 1.08998 * 109.47255 * 50.39338 * 17 15 14 40 40 H 1.09002 * 109.46774 * 170.39389 * 17 15 14 41 41 H 0.97001 * 120.00007 * 0.02562 * 18 17 15 42 42 H 1.07991 * 119.31618 * 359.97438 * 22 21 19 43 43 H 1.08001 * 126.20561 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47598 * 269.95572 * 29 28 24 45 45 H 1.09006 * 109.47619 * 29.95917 * 29 28 24 46 46 H 1.09000 * 109.47011 * 149.95368 * 29 28 24 47 47 H 1.07994 * 121.02311 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0797 -0.7905 -1.2061 5 7 3.2494 -1.5471 -0.7355 6 6 4.0125 -2.3916 -1.4968 7 1 4.8555 -2.9029 -1.0559 8 6 3.7026 -2.5908 -2.8351 9 7 2.6755 -1.9674 -3.3726 10 14 4.7432 -3.7434 -3.8734 11 1 4.1861 -5.1177 -3.7966 12 1 4.7328 -3.2832 -5.2852 13 1 6.1379 -3.7454 -3.3636 14 6 3.4652 -1.2448 0.6911 15 6 2.0790 -0.7935 1.2150 16 1 1.4469 -1.6530 1.4382 17 6 2.2229 0.1108 2.4408 18 7 2.7011 -0.6801 3.5775 19 6 2.9024 -0.0895 4.7722 20 8 2.6866 1.0994 4.9066 21 6 3.3839 -0.8868 5.9183 22 6 3.6290 -2.2596 5.7746 23 7 4.0612 -2.9849 6.7787 24 6 4.2788 -2.4601 7.9805 25 6 4.0506 -1.0866 8.2070 26 6 4.3804 -0.8386 9.6073 27 7 4.7618 -1.9694 10.1278 28 7 4.7135 -2.9826 9.1658 29 6 5.0725 -4.3846 9.3929 30 6 3.5956 -0.2842 7.1586 31 1 -0.3632 0.4643 0.9168 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3633 -1.0261 -0.0565 34 1 1.3190 -1.4771 -1.5772 35 1 2.3749 -0.1016 -1.9975 36 1 2.4592 -2.1062 -4.3079 37 1 4.1929 -0.4411 0.8028 38 1 3.7993 -2.1365 1.2215 39 1 2.9373 0.9050 2.2245 40 1 1.2551 0.5490 2.6846 41 1 2.8729 -1.6287 3.4703 42 1 3.4617 -2.7292 4.8166 43 1 4.3198 0.1108 10.1185 44 1 4.1906 -4.9380 9.7153 45 1 5.4542 -4.8165 8.4676 46 1 5.8402 -4.4427 10.1645 47 1 3.4122 0.7702 7.3036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093087447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:03 Heat of formation + Delta-G solvation = 69.486648 kcal Electronic energy + Delta-G solvation = -28926.659397 eV Core-core repulsion = 24917.741493 eV Total energy + Delta-G solvation = -4008.917905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70664 -40.94776 -39.62923 -38.77098 -36.07933 -34.91225 -34.67903 -32.83575 -32.50556 -31.78748 -30.42296 -28.06859 -27.70316 -26.64120 -25.16308 -24.94222 -23.98684 -22.02128 -21.93968 -21.54339 -20.76192 -19.16155 -18.78967 -18.64441 -17.86787 -17.00998 -16.93724 -16.80028 -16.38794 -16.21969 -15.75808 -15.57925 -15.16849 -14.82434 -14.76828 -14.54188 -14.35425 -14.28708 -14.16694 -14.06743 -13.45837 -13.39719 -13.35020 -13.20665 -13.06005 -12.80816 -12.67129 -12.36652 -12.24846 -11.92175 -11.81155 -11.61275 -11.55562 -11.44308 -11.32983 -11.11100 -10.67634 -10.56506 -10.24013 -10.08355 -9.41409 -8.85545 -7.81985 -5.16970 -0.35460 -0.32399 1.06136 1.35052 1.47170 1.48632 1.57108 1.79276 2.10669 2.51396 2.72162 3.01323 3.17841 3.36100 3.49474 3.62108 3.64802 3.73686 3.85046 3.97424 3.99116 4.00960 4.25866 4.37063 4.39646 4.43044 4.48937 4.56453 4.64544 4.65695 4.78446 4.85342 4.90554 4.93689 5.02377 5.11074 5.14102 5.21190 5.33204 5.38433 5.42155 5.51023 5.52802 5.64233 5.76309 5.86229 6.23877 6.27546 6.51398 6.69580 7.13919 7.17725 7.82136 8.46292 9.28172 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002230 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.048126 B =12552.588210 C =14101.019080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.083 0.917 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.976 3.024 11 H -0.285 1.285 12 H -0.297 1.297 13 H -0.270 1.270 14 C 0.135 3.865 15 C -0.092 4.092 16 H 0.091 0.909 17 C 0.146 3.854 18 N -0.711 5.711 19 C 0.574 3.426 20 O -0.575 6.575 21 C -0.242 4.242 22 C 0.210 3.790 23 N -0.520 5.520 24 C 0.309 3.691 25 C -0.251 4.251 26 C 0.110 3.890 27 N -0.263 5.263 28 N -0.401 5.401 29 C 0.103 3.897 30 C 0.079 3.921 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.015 0.985 35 H -0.002 1.002 36 H 0.245 0.755 37 H 0.018 0.982 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.411 0.589 42 H 0.191 0.809 43 H 0.246 0.754 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 0.675 26.941 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.093 0.907 4 C 0.066 3.934 5 N -0.356 5.356 6 C -0.368 4.368 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.804 3.196 11 H -0.212 1.212 12 H -0.224 1.224 13 H -0.194 1.194 14 C 0.011 3.989 15 C -0.111 4.111 16 H 0.110 0.890 17 C 0.022 3.978 18 N -0.363 5.363 19 C 0.362 3.638 20 O -0.456 6.456 21 C -0.250 4.250 22 C 0.039 3.961 23 N -0.235 5.235 24 C 0.070 3.930 25 C -0.261 4.261 26 C -0.088 4.088 27 N -0.074 5.074 28 N -0.190 5.190 29 C -0.037 4.037 30 C 0.051 3.949 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.208 0.792 43 H 0.262 0.738 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.122 0.878 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.566 -0.283 27.913 27.920 hybrid contribution 0.240 0.046 -1.979 1.994 sum 0.806 -0.237 25.933 25.947 Atomic orbital electron populations 1.21642 0.93022 1.01646 1.02213 1.22310 0.96932 0.98611 0.94232 0.90694 1.20976 0.88080 0.91973 0.92348 1.44797 1.32465 1.51341 1.06951 1.19460 1.07691 1.17713 0.91890 0.89876 1.25634 0.99899 1.02320 0.98296 1.70194 1.30434 1.47139 1.12277 0.85113 0.78549 0.78305 0.77596 1.21199 1.22414 1.19449 1.21793 0.95160 0.97662 0.84331 1.22493 0.97014 0.98455 0.93148 0.89028 1.21202 1.00093 0.93186 0.83340 1.45836 1.67209 1.13739 1.09502 1.17940 0.76818 0.86436 0.82588 1.90767 1.53788 1.16486 1.84529 1.20556 1.12999 0.95857 0.95547 1.23238 0.87174 0.89066 0.96605 1.66727 1.18989 1.39801 0.98010 1.19498 0.94408 0.90720 0.88402 1.20688 1.13753 0.94369 0.97316 1.25834 0.94500 0.98353 0.90122 1.76746 1.20111 0.96704 1.13879 1.48477 1.56812 1.09837 1.03899 1.22079 1.02716 0.74156 1.04719 1.21338 0.84653 1.00683 0.88245 0.90390 0.92930 0.93325 0.96649 0.98398 0.94559 0.96397 0.93065 0.91996 0.90186 0.75174 0.79192 0.73849 0.89968 0.88795 0.87816 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.17 71.98 0.66 -2.95 16 2 C -0.10 -3.44 3.01 -9.61 -0.03 -3.46 16 3 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 4 C 0.19 9.21 4.97 86.73 0.43 9.64 16 5 N -0.63 -31.38 3.39 -691.99 -2.35 -33.73 16 6 C -0.24 -13.14 10.28 84.03 0.86 -12.27 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 9 N -0.95 -57.18 10.31 21.65 0.22 -56.95 16 10 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.14 5.03 6.56 86.86 0.57 5.60 16 15 C -0.09 -2.68 2.51 -9.40 -0.02 -2.70 16 16 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 17 C 0.15 3.54 5.13 86.38 0.44 3.98 16 18 N -0.71 -14.89 5.40 -466.12 -2.52 -17.41 16 19 C 0.57 13.33 7.77 86.74 0.67 14.01 16 20 O -0.57 -17.08 16.40 -3.96 -0.07 -17.15 16 21 C -0.24 -4.72 5.89 -20.00 -0.12 -4.84 16 22 C 0.21 3.79 10.69 85.26 0.91 4.70 16 23 N -0.52 -11.00 10.37 -191.96 -1.99 -12.99 16 24 C 0.31 6.49 7.96 134.17 1.07 7.56 16 25 C -0.25 -4.51 6.36 -20.24 -0.13 -4.64 16 26 C 0.11 1.47 12.30 86.94 1.07 2.54 16 27 N -0.26 -4.62 12.39 -53.08 -0.66 -5.28 16 28 N -0.40 -7.48 4.03 -366.43 -1.48 -8.96 16 29 C 0.10 1.23 11.43 127.77 1.46 2.69 16 30 C 0.08 1.41 9.76 22.92 0.22 1.63 16 31 H 0.08 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.02 0.83 7.02 -2.39 -0.02 0.81 16 35 H 0.00 -0.12 7.50 -2.39 -0.02 -0.14 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.02 0.69 7.96 -2.39 -0.02 0.67 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 41 H 0.41 6.85 6.47 -92.71 -0.60 6.25 16 42 H 0.19 2.38 6.38 -2.92 -0.02 2.36 16 43 H 0.25 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.17 2.48 7.72 -2.91 -0.02 2.46 16 Total: -1.00 -77.17 388.86 2.13 -75.04 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.40 Total: 11.76 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 8.54 Total: 18.07 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -8.77 Total: -135.32 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.07 Total: -17.15 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.17 2.13 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093087447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.527 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds