Wall clock time and date at job start Wed Apr 1 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.30576 * 2 1 4 4 C 1.54391 * 110.43415 * 237.76256 * 2 1 3 5 5 N 1.48153 * 104.61363 * 264.95169 * 4 2 1 6 6 C 1.34771 * 127.83288 * 140.39340 * 5 4 2 7 7 O 1.21544 * 120.00272 * 354.47280 * 6 5 4 8 8 C 1.47979 * 119.99779 * 174.47295 * 6 5 4 9 9 C 1.39733 * 119.42690 * 184.85470 * 8 6 5 10 10 C 1.36987 * 119.59744 * 179.97438 * 9 8 6 11 11 C 1.39896 * 118.36168 * 0.02562 * 10 9 8 12 12 N 1.35428 * 133.81252 * 179.97438 * 11 10 9 13 13 C 1.30221 * 109.57689 * 180.02562 * 12 11 10 14 14 N 1.35990 * 110.17945 * 359.97438 * 13 12 11 15 15 H 0.97004 * 126.29834 * 179.97438 * 14 13 12 16 16 C 1.37945 * 107.41430 * 0.02562 * 14 13 12 17 17 N 1.31888 * 133.82803 * 180.30509 * 16 14 13 18 18 C 1.48138 * 104.32546 * 320.41227 * 5 4 2 19 19 C 1.54288 * 110.34190 * 122.17040 * 2 1 3 20 20 H 1.09000 * 110.34464 * 0.02562 * 19 2 1 21 21 C 1.53000 * 110.34334 * 237.84624 * 19 2 1 22 22 C 1.53004 * 109.47136 * 175.00049 * 21 19 2 23 23 N 1.46493 * 109.47157 * 180.02562 * 22 21 19 24 24 C 1.36939 * 119.99664 * 179.97438 * 23 22 21 25 25 H 1.07994 * 120.00602 * 0.02562 * 24 23 22 26 26 C 1.38820 * 119.99798 * 180.02562 * 24 23 22 27 27 N 1.31616 * 119.99893 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 120.00031 * 180.02562 * 26 24 23 29 29 H 1.48506 * 109.46947 * 59.99680 * 28 26 24 30 30 H 1.48496 * 109.47184 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47191 * 300.00016 * 28 26 24 32 32 H 1.09004 * 109.47515 * 297.82923 * 1 2 3 33 33 H 1.09007 * 109.47123 * 57.82542 * 1 2 3 34 34 H 1.08999 * 109.47169 * 177.82951 * 1 2 3 35 35 H 1.09001 * 110.40676 * 23.73492 * 4 2 1 36 36 H 1.08991 * 110.40717 * 146.16544 * 4 2 1 37 37 H 1.07998 * 120.20267 * 359.95619 * 9 8 6 38 38 H 1.07997 * 120.82043 * 179.97438 * 10 9 8 39 39 H 1.07997 * 124.91225 * 179.97438 * 13 12 11 40 40 H 1.08998 * 110.40769 * 280.80378 * 18 5 4 41 41 H 1.08993 * 110.40865 * 158.37137 * 18 5 4 42 42 H 1.08997 * 109.47163 * 55.00511 * 21 19 2 43 43 H 1.08994 * 109.47086 * 294.99714 * 21 19 2 44 44 H 1.09000 * 109.46753 * 300.00701 * 22 21 19 45 45 H 1.09007 * 109.46984 * 59.99720 * 22 21 19 46 46 H 0.96991 * 120.00234 * 0.02562 * 23 22 21 47 47 H 0.96999 * 119.99626 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2237 5 7 2.3177 -2.1430 -0.7210 6 6 2.0830 -3.3102 -1.3526 7 8 1.5195 -3.3160 -2.4294 8 6 2.5116 -4.5848 -0.7349 9 6 2.3548 -5.7784 -1.4444 10 6 2.7508 -6.9603 -0.8761 11 6 3.3033 -6.9277 0.4087 12 7 3.7859 -7.8763 1.2461 13 6 4.1930 -7.3179 2.3498 14 7 3.9993 -5.9730 2.2942 15 1 4.2185 -5.3321 2.9886 16 6 3.4327 -5.6877 1.0693 17 7 3.0428 -4.5739 0.4805 18 6 2.8823 -1.9400 0.6334 19 6 2.0663 -0.7703 1.2246 20 1 1.2398 -1.1490 1.8258 21 6 2.9670 0.1336 2.0687 22 6 3.3866 -0.6081 3.3395 23 7 4.2486 0.2575 4.1481 24 6 4.7492 -0.1953 5.3395 25 1 4.5089 -1.1906 5.6829 26 6 5.5655 0.6251 6.1060 27 7 5.8588 1.8380 5.6873 28 14 6.2491 0.0073 7.7310 29 1 7.0782 -1.2013 7.4917 30 1 7.0856 1.0661 8.3507 31 1 5.1272 -0.3345 8.6419 32 1 -0.3634 0.4798 0.9088 33 1 -0.3634 0.5473 -0.8699 34 1 -0.3633 -1.0269 -0.0389 35 1 1.3253 -0.7881 -2.0205 36 1 2.9968 -0.3226 -1.5778 37 1 1.9239 -5.7692 -2.4346 38 1 2.6384 -7.8943 -1.4066 39 1 4.6223 -7.8463 3.1881 40 1 3.9372 -1.6733 0.5694 41 1 2.7524 -2.8377 1.2378 42 1 2.4228 1.0384 2.3391 43 1 3.8541 0.4009 1.4945 44 1 2.4995 -0.8756 3.9137 45 1 3.9308 -1.5131 3.0691 46 1 4.4640 1.1516 3.8399 47 1 6.4295 2.4111 6.2228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104340608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:04 Heat of formation + Delta-G solvation = 49.041935 kcal Electronic energy + Delta-G solvation = -29767.190111 eV Core-core repulsion = 25757.385657 eV Total energy + Delta-G solvation = -4009.804454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43250 -41.41727 -39.67679 -38.67020 -36.81645 -34.97358 -34.42575 -33.52918 -32.32191 -31.75692 -31.09309 -28.42880 -27.80576 -26.14905 -25.44536 -24.39407 -23.94677 -22.64153 -22.15222 -21.20309 -20.69770 -19.70321 -19.12765 -18.68655 -18.18637 -17.18319 -17.06988 -16.62688 -16.58943 -16.10903 -15.95254 -15.49545 -15.41072 -15.20575 -15.05664 -14.61132 -14.54352 -14.25835 -14.17735 -13.91965 -13.60118 -13.43215 -13.14437 -12.98372 -12.87062 -12.75045 -12.37416 -12.34817 -12.26940 -12.20418 -12.15365 -11.86745 -11.58284 -11.47693 -11.39404 -11.24758 -10.89851 -10.20945 -10.06256 -9.87057 -9.59560 -8.98289 -7.93710 -5.22491 -0.69851 0.07897 1.34729 1.44370 1.47898 1.50958 1.57196 1.83061 1.90161 2.57084 2.71842 2.92714 3.17602 3.39858 3.40275 3.55349 3.62698 3.74464 3.83689 3.95918 4.12104 4.16785 4.23490 4.34144 4.47070 4.53297 4.54803 4.58149 4.66893 4.69619 4.74098 4.85674 4.86912 4.91952 4.97658 4.99633 5.08193 5.11751 5.19992 5.26109 5.37146 5.39247 5.45775 5.50728 5.56164 6.02401 6.28523 6.37810 6.51188 6.61477 6.94976 7.34712 8.12025 8.34674 9.29951 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.003419 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.061671 B = 8187.505584 C =11196.612239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.101 0.899 4 C 0.104 3.896 5 N -0.601 5.601 6 C 0.590 3.410 7 O -0.562 6.562 8 C 0.097 3.903 9 C -0.122 4.122 10 C -0.027 4.027 11 C 0.015 3.985 12 N -0.526 5.526 13 C 0.313 3.687 14 N -0.581 5.581 15 H 0.444 0.556 16 C 0.210 3.790 17 N -0.453 5.453 18 C 0.103 3.897 19 C -0.084 4.084 20 H 0.079 0.921 21 C -0.101 4.101 22 C 0.154 3.846 23 N -0.748 5.748 24 C -0.245 4.245 25 H 0.077 0.923 26 C -0.076 4.076 27 N -0.971 5.971 28 Si 0.973 3.027 29 H -0.275 1.275 30 H -0.298 1.298 31 H -0.278 1.278 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.278 0.722 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.022 0.978 46 H 0.373 0.627 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -16.148 -12.583 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.119 0.881 4 C -0.017 4.017 5 N -0.332 5.332 6 C 0.378 3.622 7 O -0.441 6.441 8 C -0.050 4.050 9 C -0.145 4.145 10 C -0.054 4.054 11 C -0.107 4.107 12 N -0.247 5.247 13 C 0.026 3.974 14 N -0.196 5.196 15 H 0.286 0.714 16 C -0.029 4.029 17 N -0.169 5.169 18 C -0.019 4.019 19 C -0.104 4.104 20 H 0.098 0.902 21 C -0.139 4.139 22 C 0.027 3.973 23 N -0.391 5.391 24 C -0.377 4.377 25 H 0.095 0.905 26 C -0.269 4.269 27 N -0.622 5.622 28 Si 0.801 3.199 29 H -0.201 1.201 30 H -0.224 1.224 31 H -0.204 1.204 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.293 0.707 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.040 0.960 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.898 -16.465 -12.830 22.318 hybrid contribution 0.710 0.826 1.119 1.561 sum -7.188 -15.638 -11.711 20.818 Atomic orbital electron populations 1.21787 0.93680 1.01318 1.02628 1.22175 0.96845 0.99871 0.92768 0.88089 1.22624 1.01602 0.80110 0.97394 1.48833 1.60740 1.05385 1.18233 1.17500 0.78656 0.82226 0.83771 1.90764 1.44149 1.86755 1.22444 1.20787 0.99732 0.94333 0.90186 1.21637 1.00208 0.90413 1.02277 1.20738 0.93789 0.99841 0.91041 1.20255 1.02926 0.90400 0.97137 1.70515 1.19576 1.31509 1.03076 1.26694 0.93679 0.78735 0.98261 1.43128 1.51540 1.10898 1.14068 0.71376 1.19296 1.01874 0.91693 0.90067 1.66364 1.11551 1.28733 1.10255 1.22948 0.96643 1.00189 0.82120 1.22080 0.97717 0.94824 0.95814 0.90214 1.21645 0.99048 0.98234 0.95015 1.20808 0.92236 0.93236 0.90974 1.42618 1.58347 1.16092 1.22019 1.19613 1.22528 0.98641 0.96921 0.90494 1.25579 1.01926 0.96625 1.02727 1.69810 1.42651 1.09256 1.40467 0.85226 0.77999 0.76960 0.79674 1.20064 1.22408 1.20378 0.91882 0.91280 0.93933 0.89761 0.89885 0.81515 0.80780 0.70698 0.91722 0.87205 0.91553 0.91861 0.96658 0.95985 0.79530 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.91 71.98 0.64 -1.93 16 2 C -0.10 -1.98 3.30 -9.89 -0.03 -2.01 16 3 H 0.10 1.87 7.71 -2.39 -0.02 1.86 16 4 C 0.10 2.27 6.62 86.53 0.57 2.85 16 5 N -0.60 -15.41 3.32 -811.21 -2.69 -18.10 16 6 C 0.59 16.57 7.88 86.83 0.68 17.25 16 7 O -0.56 -17.82 16.55 -3.85 -0.06 -17.88 16 8 C 0.10 2.48 6.73 41.97 0.28 2.76 16 9 C -0.12 -2.55 9.55 22.34 0.21 -2.33 16 10 C -0.03 -0.51 10.16 22.38 0.23 -0.28 16 11 C 0.01 0.32 7.25 39.69 0.29 0.61 16 12 N -0.53 -10.22 11.27 -191.66 -2.16 -12.38 16 13 C 0.31 3.78 12.96 180.04 2.33 6.12 16 14 N -0.58 -9.15 6.22 -195.69 -1.22 -10.36 16 15 H 0.44 5.40 8.96 -92.71 -0.83 4.57 16 16 C 0.21 4.80 8.46 134.06 1.13 5.93 16 17 N -0.45 -11.55 6.66 -181.82 -1.21 -12.76 16 18 C 0.10 2.63 5.24 86.54 0.45 3.08 16 19 C -0.08 -2.03 2.71 -9.88 -0.03 -2.06 16 20 H 0.08 1.97 7.71 -2.39 -0.02 1.95 16 21 C -0.10 -2.97 4.51 30.60 0.14 -2.83 16 22 C 0.15 5.78 6.13 86.38 0.53 6.31 16 23 N -0.75 -37.04 5.60 -343.45 -1.92 -38.96 16 24 C -0.25 -13.31 9.99 84.04 0.84 -12.47 16 25 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 26 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 27 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 28 Si 0.97 44.65 29.55 68.60 2.03 46.67 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 31 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.85 7.57 -2.39 -0.02 1.83 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.17 3.01 7.62 -2.91 -0.02 2.99 16 38 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.28 0.08 8.06 -2.91 -0.02 0.05 16 40 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 41 H 0.11 2.94 5.32 -2.39 -0.01 2.93 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 1.89 7.98 -2.39 -0.02 1.87 16 44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.02 0.82 7.59 -2.38 -0.02 0.80 16 46 H 0.37 19.73 7.67 -92.71 -0.71 19.02 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -75.26 386.44 1.27 -73.99 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.52 Total: 30.97 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 8.75 Total: 17.16 kcal Atomic # 7 Polarization: -141.99 SS G_CDS: -8.92 Total: -150.91 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.06 Total: -17.88 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.26 1.27 -73.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104340608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.034 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds