Wall clock time and date at job start Wed Apr 1 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.88541 * 2 1 4 4 C 1.54914 * 111.00210 * 236.12272 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.88127 * 4 2 1 6 6 C 1.34777 * 125.64500 * 204.16642 * 5 4 2 7 7 O 1.21591 * 120.00027 * 179.97438 * 6 5 4 8 8 C 1.47580 * 120.00037 * 359.95357 * 6 5 4 9 9 C 1.36475 * 125.91637 * 180.02562 * 8 6 5 10 10 N 1.36196 * 107.01287 * 180.02562 * 9 8 6 11 11 C 1.36669 * 132.44223 * 180.02562 * 10 9 8 12 12 C 1.35483 * 119.09766 * 180.02562 * 11 10 9 13 13 C 1.40299 * 119.35897 * 359.95991 * 12 11 10 14 14 N 1.31143 * 120.41428 * 0.02562 * 13 12 11 15 15 C 1.34281 * 120.94609 * 0.02562 * 14 13 12 16 16 N 1.32209 * 131.66633 * 180.33623 * 15 14 13 17 17 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 18 18 C 1.54325 * 107.40412 * 358.86539 * 17 5 4 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 5 20 20 C 1.52995 * 110.72304 * 219.52316 * 18 17 5 21 21 C 1.52996 * 109.46978 * 293.54583 * 20 18 17 22 22 N 1.46500 * 109.47407 * 180.02562 * 21 20 18 23 23 C 1.36936 * 120.00053 * 180.02562 * 22 21 20 24 24 H 1.07997 * 120.00360 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99695 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00109 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99762 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47335 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47012 * 120.00060 * 27 25 23 30 30 H 1.48505 * 109.47003 * 239.99478 * 27 25 23 31 31 H 1.08997 * 109.47394 * 182.42055 * 1 2 3 32 32 H 1.08994 * 109.47153 * 302.42553 * 1 2 3 33 33 H 1.09004 * 109.47185 * 62.42533 * 1 2 3 34 34 H 1.08999 * 110.37121 * 86.03862 * 4 2 1 35 35 H 1.09003 * 110.36718 * 323.71766 * 4 2 1 36 36 H 1.07998 * 126.49768 * 359.97438 * 9 8 6 37 37 H 1.07993 * 120.45243 * 359.96148 * 11 10 9 38 38 H 1.08003 * 120.31658 * 179.97438 * 12 11 10 39 39 H 1.07994 * 119.79404 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.88241 * 118.36067 * 17 5 4 41 41 H 1.09000 * 109.88049 * 239.37196 * 17 5 4 42 42 H 1.08999 * 109.47410 * 53.54449 * 20 18 17 43 43 H 1.08997 * 109.47486 * 173.54242 * 20 18 17 44 44 H 1.09003 * 109.47054 * 299.99653 * 21 20 18 45 45 H 1.08997 * 109.47291 * 59.99539 * 21 20 18 46 46 H 0.97007 * 119.99965 * 359.97438 * 22 21 20 47 47 H 0.97002 * 119.99588 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4274 -1.2420 -0.7742 6 6 4.4482 -1.5586 -1.5954 7 8 5.5166 -1.9067 -1.1309 8 6 4.2691 -1.4831 -3.0583 9 6 5.2159 -1.7750 -3.9969 10 7 4.6429 -1.5757 -5.2163 11 6 5.1163 -1.7118 -6.4911 12 6 4.2948 -1.4343 -7.5321 13 6 2.9801 -1.0154 -7.2782 14 7 2.5488 -0.8925 -6.0459 15 6 3.3509 -1.1627 -5.0034 16 7 3.1417 -1.1180 -3.6987 17 6 3.4683 -1.2733 0.6950 18 6 2.0887 -0.8064 1.2052 19 1 1.4496 -1.6613 1.4260 20 6 2.2414 0.0894 2.4360 21 6 2.7945 -0.7341 3.6008 22 7 2.9402 0.1235 4.7795 23 6 3.4218 -0.3982 5.9505 24 1 3.6938 -1.4419 6.0052 25 6 3.5604 0.4146 7.0672 26 7 3.2294 1.6868 7.0004 27 14 4.2166 -0.2971 8.6647 28 1 4.5125 -1.7404 8.4790 29 1 5.4595 0.4178 9.0515 30 1 3.1990 -0.1345 9.7340 31 1 -0.3634 -1.0267 0.0434 32 1 -0.3633 0.5510 0.8674 33 1 -0.3634 0.4757 -0.9110 34 1 2.1553 -0.1714 -2.0840 35 1 1.4521 -1.6702 -1.4028 36 1 6.2280 -2.1013 -3.8085 37 1 6.1317 -2.0353 -6.6663 38 1 4.6486 -1.5349 -8.5476 39 1 2.3192 -0.7927 -8.1027 40 1 3.6665 -2.2886 1.0388 41 1 4.2451 -0.6007 1.0587 42 1 2.9284 0.9047 2.2091 43 1 1.2693 0.4993 2.7101 44 1 2.1074 -1.5494 3.8278 45 1 3.7666 -1.1440 3.3267 46 1 2.6963 1.0611 4.7303 47 1 3.3266 2.2548 7.7807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104384822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:21 Heat of formation + Delta-G solvation = 65.211038 kcal Electronic energy + Delta-G solvation = -28899.094352 eV Core-core repulsion = 24889.991043 eV Total energy + Delta-G solvation = -4009.103309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.15525 -41.26992 -39.48619 -38.77267 -36.88180 -35.74106 -34.64867 -33.48106 -32.24262 -31.69834 -30.56231 -28.83341 -27.38165 -26.56869 -25.61159 -24.36931 -24.25800 -23.44927 -21.91815 -21.09558 -20.66445 -19.38290 -19.14838 -18.77437 -17.81941 -17.63628 -17.32548 -16.87190 -16.64865 -16.34535 -15.84668 -15.48144 -15.39917 -15.24301 -15.16964 -14.98934 -14.47471 -14.33575 -13.92018 -13.87901 -13.66278 -13.45241 -13.32459 -13.10207 -12.95121 -12.88698 -12.65112 -12.55228 -12.31016 -12.08153 -11.93311 -11.84639 -11.62217 -11.57237 -11.32969 -11.15970 -10.93937 -10.81981 -10.29015 -9.79630 -9.37896 -9.00747 -7.96270 -5.25271 -0.55649 -0.05474 0.81632 1.19656 1.46065 1.47468 1.57807 1.80902 2.13665 2.42400 2.54298 2.55274 3.17944 3.37138 3.40218 3.50949 3.56226 3.63367 3.67355 3.90670 4.08411 4.12958 4.23841 4.29778 4.30141 4.42165 4.50499 4.54259 4.60861 4.68151 4.69119 4.73762 4.80431 4.85714 4.93396 4.98659 5.02668 5.15869 5.17075 5.27019 5.29789 5.34451 5.40236 5.48940 5.49611 5.52041 6.26635 6.28207 6.35434 6.71408 6.95157 7.32344 8.08639 8.32228 9.27610 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.001915 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.809139 B =14619.416507 C =15486.334147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.605 3.395 7 O -0.571 6.571 8 C -0.009 4.009 9 C -0.001 4.001 10 N -0.404 5.404 11 C 0.100 3.900 12 C -0.184 4.184 13 C 0.189 3.811 14 N -0.484 5.484 15 C 0.364 3.636 16 N -0.477 5.477 17 C 0.112 3.888 18 C -0.077 4.077 19 H 0.099 0.901 20 C -0.098 4.098 21 C 0.149 3.851 22 N -0.748 5.748 23 C -0.247 4.247 24 H 0.074 0.926 25 C -0.078 4.078 26 N -0.969 5.969 27 Si 0.976 3.024 28 H -0.267 1.267 29 H -0.293 1.293 30 H -0.290 1.290 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.222 0.778 37 H 0.219 0.781 38 H 0.219 0.781 39 H 0.225 0.775 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.015 0.985 46 H 0.374 0.626 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -7.508 -40.095 40.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.332 5.332 6 C 0.393 3.607 7 O -0.452 6.452 8 C -0.141 4.141 9 C -0.138 4.138 10 N -0.081 5.081 11 C -0.029 4.029 12 C -0.206 4.206 13 C 0.002 3.998 14 N -0.197 5.197 15 C 0.014 3.986 16 N -0.202 5.202 17 C -0.011 4.011 18 C -0.096 4.096 19 H 0.118 0.882 20 C -0.137 4.137 21 C 0.023 3.977 22 N -0.391 5.391 23 C -0.379 4.379 24 H 0.092 0.908 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.804 3.196 28 H -0.192 1.192 29 H -0.220 1.220 30 H -0.217 1.217 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.238 0.762 37 H 0.235 0.765 38 H 0.236 0.764 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.033 0.967 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.225 -7.404 -38.933 39.650 hybrid contribution 1.885 -0.242 0.924 2.113 sum 0.660 -7.646 -38.008 38.776 Atomic orbital electron populations 1.21644 0.91827 1.02877 1.02761 1.22484 0.97716 0.98790 0.92453 0.90187 1.22638 0.80911 0.98960 0.98061 1.48361 1.13235 1.64685 1.06968 1.16823 0.82568 0.77196 0.84083 1.90790 1.26887 1.50506 1.76975 1.20363 0.91835 1.08251 0.93628 1.22824 1.01503 1.08374 0.81071 1.44010 1.13704 1.42927 1.07467 1.23259 1.03351 0.96866 0.79402 1.22510 0.93892 1.02004 1.02207 1.24367 0.95562 0.87318 0.92506 1.68090 1.33087 1.19502 0.99061 1.22169 0.81033 1.02518 0.92911 1.70747 1.25135 1.23436 1.00845 1.22094 0.98884 1.01412 0.78671 1.22224 0.94391 0.98963 0.94069 0.88234 1.21541 1.01518 0.97612 0.92986 1.20856 0.97038 0.93363 0.86433 1.42607 1.78247 1.09814 1.08384 1.19697 1.33848 0.94747 0.89588 0.90792 1.25612 1.03446 0.96235 1.01706 1.69829 1.56131 1.05781 1.30293 0.85041 0.77173 0.77870 0.79486 1.19151 1.21965 1.21669 0.91633 0.91802 0.91186 0.88756 0.90819 0.76161 0.76460 0.76418 0.75839 0.91612 0.92583 0.92598 0.90679 0.95842 0.96721 0.79418 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.30 71.98 0.67 -1.88 16 2 C -0.10 -2.25 3.09 -9.31 -0.03 -2.28 16 3 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 4 C 0.12 2.96 5.60 86.86 0.49 3.45 16 5 N -0.60 -18.31 3.33 -815.47 -2.71 -21.03 16 6 C 0.60 19.62 7.85 86.71 0.68 20.30 16 7 O -0.57 -21.48 17.20 -4.00 -0.07 -21.55 16 8 C -0.01 -0.24 6.78 40.76 0.28 0.04 16 9 C 0.00 -0.02 11.47 83.60 0.96 0.94 16 10 N -0.40 -6.24 2.93 -356.82 -1.05 -7.29 16 11 C 0.10 0.38 11.05 83.30 0.92 1.30 16 12 C -0.18 0.15 10.06 22.13 0.22 0.38 16 13 C 0.19 0.91 11.27 85.30 0.96 1.87 16 14 N -0.48 -8.45 10.48 -197.17 -2.07 -10.51 16 15 C 0.36 8.06 8.90 261.35 2.33 10.38 16 16 N -0.48 -13.06 8.37 -188.82 -1.58 -14.64 16 17 C 0.11 3.49 5.61 86.73 0.49 3.97 16 18 C -0.08 -2.10 2.47 -9.52 -0.02 -2.12 16 19 H 0.10 2.50 8.02 -2.39 -0.02 2.48 16 20 C -0.10 -3.28 4.72 30.59 0.14 -3.14 16 21 C 0.15 6.32 6.11 86.38 0.53 6.85 16 22 N -0.75 -40.31 5.60 -343.46 -1.92 -42.24 16 23 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 24 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 25 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 26 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 27 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 28 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 29 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 30 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 2.56 6.14 -2.39 -0.01 2.54 16 35 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 36 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.22 -1.08 8.06 -2.91 -0.02 -1.10 16 38 H 0.22 -2.39 8.06 -2.91 -0.02 -2.41 16 39 H 0.23 -0.97 8.06 -2.91 -0.02 -0.99 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 1.97 7.75 -2.39 -0.02 1.95 16 42 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.01 0.64 7.49 -2.39 -0.02 0.63 16 46 H 0.37 21.19 7.67 -92.70 -0.71 20.48 16 47 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -87.96 390.03 3.10 -84.86 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.28 Total: 21.39 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 9.92 Total: 22.14 kcal Atomic # 7 Polarization: -147.77 SS G_CDS: -9.05 Total: -156.82 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -87.96 3.10 -84.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104384822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.070 kcal (2) G-P(sol) polarization free energy of solvation -87.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds