Wall clock time and date at job start Wed Apr 1 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46100 * 2 1 4 4 C 1.53045 * 109.44661 * 240.03801 * 2 1 3 5 5 C 1.52766 * 109.37974 * 301.22293 * 4 2 1 6 6 N 1.46922 * 109.01344 * 305.58973 * 5 4 2 7 7 C 1.34773 * 120.63178 * 233.58874 * 6 5 4 8 8 O 1.21587 * 119.99877 * 5.56812 * 7 6 5 9 9 C 1.47532 * 120.00057 * 185.57391 * 7 6 5 10 10 C 1.39409 * 120.75738 * 53.63578 * 9 7 6 11 11 N 1.31914 * 121.01962 * 179.97438 * 10 9 7 12 12 C 1.31795 * 122.59840 * 359.97438 * 11 10 9 13 13 C 1.39444 * 120.63290 * 0.02562 * 12 11 10 14 14 N 1.35702 * 134.43135 * 179.97438 * 13 12 11 15 15 C 1.30131 * 109.49742 * 180.02562 * 14 13 12 16 16 N 1.36261 * 110.06144 * 359.97438 * 15 14 13 17 17 H 0.97000 * 126.29778 * 179.97438 * 16 15 14 18 18 C 1.36921 * 107.39849 * 0.02562 * 16 15 14 19 19 C 1.46930 * 118.73600 * 53.30838 * 6 5 4 20 20 C 1.53041 * 109.46121 * 119.97781 * 2 1 3 21 21 H 1.08994 * 109.49488 * 178.59019 * 20 2 1 22 22 C 1.52997 * 109.52178 * 298.67094 * 20 2 1 23 23 N 1.46506 * 109.47249 * 184.85282 * 22 20 2 24 24 C 1.36936 * 120.00046 * 179.97438 * 23 22 20 25 25 H 1.07997 * 119.99994 * 0.02562 * 24 23 22 26 26 C 1.38809 * 119.99738 * 180.02562 * 24 23 22 27 27 N 1.31617 * 120.00151 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 120.00183 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47001 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.47434 * 119.99970 * 28 26 24 31 31 H 1.48498 * 109.47461 * 240.00570 * 28 26 24 32 32 H 1.09004 * 109.46818 * 300.02243 * 1 2 3 33 33 H 1.09001 * 109.47433 * 60.02288 * 1 2 3 34 34 H 1.09004 * 109.47491 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.49606 * 61.30185 * 4 2 1 36 36 H 1.08991 * 109.49480 * 181.36978 * 4 2 1 37 37 H 1.08999 * 109.50792 * 185.70455 * 5 4 2 38 38 H 1.09007 * 109.43012 * 65.43250 * 5 4 2 39 39 H 1.08005 * 119.48759 * 0.25820 * 10 9 7 40 40 H 1.07998 * 119.68368 * 180.02562 * 12 11 10 41 41 H 1.08003 * 124.96803 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.58450 * 66.43192 * 19 6 5 43 43 H 1.08999 * 109.58547 * 186.85515 * 19 6 5 44 44 H 1.08993 * 109.47244 * 304.85495 * 22 20 2 45 45 H 1.09008 * 109.47003 * 64.85595 * 22 20 2 46 46 H 0.96998 * 119.99339 * 0.02562 * 23 22 20 47 47 H 0.97003 * 119.99941 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7207 -1.2503 5 6 1.5039 -2.1513 -1.2644 6 7 1.8619 -2.8090 -0.0003 7 6 2.5156 -3.9876 -0.0005 8 8 2.9040 -4.4672 -1.0481 9 6 2.7598 -4.6959 1.2704 10 6 1.7086 -4.9833 2.1398 11 7 1.9210 -5.6168 3.2773 12 6 3.1196 -6.0117 3.6570 13 6 4.2345 -5.7702 2.8550 14 7 5.5596 -6.0422 2.9633 15 6 6.1829 -5.5902 1.9142 16 7 5.2980 -4.9988 1.0634 17 1 5.5092 -4.5841 0.2123 18 6 4.0560 -5.0966 1.6315 19 6 1.4993 -2.1543 1.2641 20 6 2.0399 -0.7210 1.2499 21 1 3.1295 -0.7433 1.2379 22 6 1.5579 0.0189 2.4993 23 7 2.1410 -0.6032 3.6907 24 6 1.8507 -0.1073 4.9337 25 1 1.1917 0.7422 5.0358 26 6 2.4036 -0.6964 6.0624 27 7 3.2071 -1.7314 5.9380 28 14 2.0072 -0.0204 7.7581 29 1 1.0862 1.1371 7.6266 30 1 1.3584 -1.0784 8.5736 31 1 3.2612 0.4173 8.4221 32 1 -0.3633 0.5142 0.8898 33 1 -0.3634 0.5135 -0.8902 34 1 -0.3634 -1.0277 0.0005 35 1 1.6954 -0.1933 -2.1399 36 1 3.1292 -0.7425 -1.2389 37 1 1.9455 -2.6972 -2.0981 38 1 0.4193 -2.1314 -1.3716 39 1 0.7042 -4.6867 1.8759 40 1 3.2396 -6.5274 4.5983 41 1 7.2460 -5.6725 1.7426 42 1 0.4144 -2.1346 1.3673 43 1 1.9379 -2.7020 2.0981 44 1 1.8678 1.0625 2.4458 45 1 0.4707 -0.0348 2.5566 46 1 2.7331 -1.3659 3.5989 47 1 3.5938 -2.1428 6.7267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132837043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:52 Heat of formation + Delta-G solvation = 61.115168 kcal Electronic energy + Delta-G solvation = -31330.915880 eV Core-core repulsion = 27321.634961 eV Total energy + Delta-G solvation = -4009.280919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39882 -40.46174 -38.48866 -37.96057 -34.84345 -33.84146 -33.22576 -32.09737 -31.08280 -30.06806 -29.66634 -27.71713 -25.61614 -25.39503 -24.03191 -23.24776 -23.00274 -22.09830 -21.11658 -20.04635 -18.81040 -18.19037 -17.62754 -17.19221 -16.90267 -16.21250 -15.66696 -15.35946 -15.07176 -14.96116 -14.88163 -14.73257 -14.32576 -13.97584 -13.78052 -13.58745 -13.34850 -12.98901 -12.89916 -12.71774 -12.50574 -12.38942 -11.95101 -11.74899 -11.37258 -11.09294 -10.99899 -10.87340 -10.83012 -10.72227 -10.52780 -10.34283 -10.25330 -10.15172 -9.94018 -9.65142 -9.37423 -9.03738 -8.88250 -8.60836 -8.26859 -6.92725 -5.75120 -3.04850 0.57297 1.46100 2.43233 2.70944 2.80969 3.00471 3.44298 3.49736 3.52237 3.93146 4.11952 4.29316 4.54314 4.57326 4.69126 4.77388 4.83650 4.85815 4.99854 5.06917 5.10018 5.26383 5.31204 5.36062 5.47120 5.58138 5.62700 5.65210 5.69996 5.71827 5.81921 5.87885 5.93864 5.97828 6.02066 6.22934 6.24067 6.26447 6.27477 6.40492 6.48764 6.54137 6.68963 6.80906 7.12959 7.32045 7.63972 7.71129 8.01623 8.09551 8.41814 9.53492 10.09060 10.43199 11.46869 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007586 B = 0.005541 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3690.276131 B = 5052.300527 C = 7775.607257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.599 5.599 7 C 0.571 3.429 8 O -0.549 6.549 9 C -0.178 4.178 10 C 0.148 3.852 11 N -0.478 5.478 12 C 0.207 3.793 13 C -0.008 4.008 14 N -0.472 5.472 15 C 0.262 3.738 16 N -0.589 5.589 17 H 0.428 0.572 18 C 0.123 3.877 19 C 0.108 3.892 20 C -0.101 4.101 21 H 0.071 0.929 22 C 0.160 3.840 23 N -0.732 5.732 24 C -0.243 4.243 25 H 0.070 0.930 26 C -0.009 4.009 27 N -0.926 5.926 28 Si 0.904 3.096 29 H -0.281 1.281 30 H -0.291 1.291 31 H -0.293 1.293 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.222 0.778 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.021 0.979 45 H 0.025 0.975 46 H 0.381 0.619 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -4.074 -15.545 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.012 4.012 6 N -0.330 5.330 7 C 0.358 3.642 8 O -0.428 6.428 9 C -0.187 4.187 10 C -0.004 4.004 11 N -0.187 5.187 12 C 0.042 3.958 13 C -0.129 4.129 14 N -0.191 5.191 15 C -0.026 4.026 16 N -0.199 5.199 17 H 0.267 0.733 18 C 0.003 3.997 19 C -0.014 4.014 20 C -0.121 4.121 21 H 0.089 0.911 22 C 0.032 3.968 23 N -0.376 5.376 24 C -0.374 4.374 25 H 0.088 0.912 26 C -0.206 4.206 27 N -0.574 5.574 28 Si 0.735 3.265 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.220 1.220 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.238 0.762 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.039 0.961 45 H 0.043 0.957 46 H 0.215 0.785 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.007 -4.808 -14.719 15.484 hybrid contribution 0.677 1.146 -0.583 1.453 sum 0.684 -3.662 -15.302 15.749 Atomic orbital electron populations 1.21990 0.95061 1.02026 1.01929 1.21085 0.96155 0.99420 0.93767 0.90755 1.21860 1.01092 0.95153 0.98473 1.21568 1.00131 0.93161 0.86357 1.48133 1.56507 1.20170 1.08221 1.18092 0.77321 0.80605 0.88144 1.90748 1.51917 1.67220 1.32916 1.19659 0.91766 1.08536 0.98709 1.22673 0.97820 0.92342 0.87578 1.67701 1.23109 1.12256 1.15677 1.22299 0.84488 0.91874 0.97159 1.20074 0.93283 1.04231 0.95270 1.70450 1.03372 1.23075 1.22200 1.25547 0.97472 0.93812 0.85789 1.43004 1.05760 1.49626 1.21531 0.73266 1.18560 0.86395 0.99692 0.95071 1.22076 1.00730 0.93775 0.84769 1.21675 1.00670 0.94165 0.95568 0.91087 1.20695 0.96145 0.94798 0.85181 1.42369 1.57010 1.37403 1.00847 1.19205 1.23546 1.11035 0.83647 0.91217 1.24718 0.99908 0.98220 0.97715 1.69657 1.35357 1.23995 1.28434 0.86175 0.77379 0.78013 0.84939 1.20646 1.21769 1.21972 0.91690 0.93034 0.92415 0.90723 0.91758 0.89294 0.91006 0.81936 0.81360 0.76206 0.90588 0.88514 0.96080 0.95709 0.78528 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 2 C -0.09 -1.00 2.71 -90.57 -0.25 -1.24 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.32 5.61 -26.83 -0.15 -1.47 16 5 C 0.11 1.23 5.95 -3.93 -0.02 1.21 16 6 N -0.60 -8.08 2.98 -174.26 -0.52 -8.60 16 7 C 0.57 8.71 7.20 -12.47 -0.09 8.62 16 8 O -0.55 -9.30 16.50 5.29 0.09 -9.21 16 9 C -0.18 -2.81 4.62 -104.86 -0.48 -3.29 16 10 C 0.15 2.33 8.95 -17.08 -0.15 2.18 16 11 N -0.48 -8.14 10.30 -12.64 -0.13 -8.27 16 12 C 0.21 3.42 11.25 -17.12 -0.19 3.23 16 13 C -0.01 -0.14 7.27 -84.74 -0.62 -0.76 16 14 N -0.47 -7.24 11.28 -12.01 -0.14 -7.37 16 15 C 0.26 3.00 12.97 -89.56 -1.16 1.84 16 16 N -0.59 -7.35 6.19 -11.51 -0.07 -7.42 16 17 H 0.43 4.39 8.96 -40.82 -0.37 4.03 16 18 C 0.12 1.95 7.11 -83.81 -0.60 1.35 16 19 C 0.11 1.60 4.20 -3.71 -0.02 1.58 16 20 C -0.10 -1.53 2.15 -90.50 -0.19 -1.72 16 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 22 C 0.16 3.00 5.19 -4.04 -0.02 2.98 16 23 N -0.73 -17.78 5.38 -59.91 -0.32 -18.11 16 24 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 25 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 26 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 27 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 28 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 32 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 38 H 0.07 0.71 6.70 -51.92 -0.35 0.36 16 39 H 0.16 2.20 7.75 -52.48 -0.41 1.79 16 40 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 41 H 0.22 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.08 1.06 6.69 -51.93 -0.35 0.71 16 43 H 0.10 1.70 4.58 -51.93 -0.24 1.46 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.03 0.46 6.73 -51.92 -0.35 0.11 16 46 H 0.38 9.89 6.89 -40.82 -0.28 9.61 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -34.40 373.32 -9.88 -44.28 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.23 Total: 12.62 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -3.89 Total: 6.03 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -0.45 Total: -76.65 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.40 -9.88 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132837043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.398 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds