Wall clock time and date at job start Wed Apr 1 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47336 * 2 1 4 4 C 1.52994 * 109.47118 * 239.99680 * 2 1 3 5 5 C 1.53007 * 109.47322 * 176.87466 * 4 2 1 6 6 H 1.08998 * 109.46507 * 54.76496 * 5 4 2 7 7 C 1.53000 * 109.46868 * 294.76744 * 5 4 2 8 8 N 1.46496 * 109.47454 * 174.76415 * 5 4 2 9 9 C 1.36935 * 120.00098 * 204.93420 * 8 5 4 10 10 H 1.07992 * 120.00001 * 4.91131 * 9 8 5 11 11 C 1.38819 * 119.99956 * 184.91071 * 9 8 5 12 12 N 1.31620 * 119.99623 * 183.73842 * 11 9 8 13 13 Si 1.86795 * 119.99891 * 3.73164 * 11 9 8 14 14 H 1.48507 * 109.46744 * 91.99568 * 13 11 9 15 15 H 1.48496 * 109.47039 * 211.99205 * 13 11 9 16 16 H 1.48497 * 109.47504 * 331.99392 * 13 11 9 17 17 N 1.46499 * 109.47189 * 119.99571 * 2 1 3 18 18 C 1.34778 * 120.00381 * 274.28583 * 17 2 1 19 19 O 1.21575 * 119.99789 * 4.73444 * 18 17 2 20 20 C 1.47658 * 120.00271 * 184.74565 * 18 17 2 21 21 C 1.40233 * 120.49747 * 175.01105 * 20 18 17 22 22 C 1.38021 * 118.35456 * 179.72216 * 21 20 18 23 23 C 1.39155 * 119.25709 * 0.49153 * 22 21 20 24 24 N 1.39491 * 119.52922 * 179.76735 * 23 22 21 25 25 C 1.37229 * 126.49899 * 184.98210 * 24 23 22 26 26 C 1.34594 * 106.82589 * 180.14282 * 25 24 23 27 27 N 1.34167 * 108.23399 * 359.62326 * 26 25 24 28 28 C 1.30458 * 109.38961 * 0.23870 * 27 26 25 29 29 N 1.32429 * 120.94353 * 359.49698 * 23 22 21 30 30 C 1.31642 * 121.80112 * 0.24912 * 29 23 22 31 31 H 1.08999 * 109.47797 * 300.00372 * 1 2 3 32 32 H 1.09004 * 109.47420 * 60.00569 * 1 2 3 33 33 H 1.09003 * 109.47336 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47411 * 296.87339 * 4 2 1 35 35 H 1.09002 * 109.47534 * 56.87822 * 4 2 1 36 36 H 1.08998 * 109.46987 * 299.99633 * 7 5 4 37 37 H 1.08993 * 109.47039 * 60.00018 * 7 5 4 38 38 H 1.08998 * 109.46863 * 179.97438 * 7 5 4 39 39 H 0.97007 * 120.00007 * 24.92747 * 8 5 4 40 40 H 0.97001 * 119.99653 * 179.97438 * 12 11 9 41 41 H 0.97002 * 119.99854 * 94.27919 * 17 2 1 42 42 H 1.08004 * 120.82122 * 359.97276 * 21 20 18 43 43 H 1.07998 * 120.36916 * 180.26192 * 22 21 20 44 44 H 1.07997 * 126.58666 * 0.02562 * 25 24 23 45 45 H 1.07999 * 125.87948 * 179.88084 * 26 25 24 46 46 H 1.08000 * 125.72973 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.68046 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5680 -0.6536 -1.2891 6 1 3.9736 -1.0499 -0.3583 7 6 4.0096 0.8014 -1.4593 8 7 4.0628 -1.4491 -2.4154 9 6 5.3303 -1.9664 -2.3837 10 1 5.9366 -1.8558 -1.4970 11 6 5.8358 -2.6329 -3.4916 12 7 7.0252 -3.1938 -3.4359 13 14 4.8279 -2.7338 -5.0610 14 1 5.1787 -1.5960 -5.9485 15 1 5.1214 -4.0127 -5.7563 16 1 3.3825 -2.6730 -4.7260 17 7 2.0183 -0.6905 1.1962 18 6 2.1607 -0.0147 2.3536 19 8 1.8034 1.1449 2.4283 20 6 2.7510 -0.6826 3.5308 21 6 3.0001 0.0383 4.7075 22 6 3.5476 -0.6315 5.7830 23 6 3.8417 -1.9862 5.6625 24 7 4.3996 -2.6676 6.7443 25 6 4.8318 -3.9700 6.7536 26 6 5.2924 -4.2188 7.9936 27 7 5.1562 -3.1016 8.7240 28 6 4.6231 -2.1654 7.9883 29 7 3.5945 -2.6392 4.5372 30 6 3.0686 -2.0408 3.4891 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7231 -1.7639 -1.2216 35 1 1.6316 -0.2409 -2.1383 36 1 3.6039 1.1977 -2.3901 37 1 3.6415 1.3932 -0.6214 38 1 5.0982 0.8497 -1.4874 39 1 3.4925 -1.6095 -3.1835 40 1 7.3783 -3.6599 -4.2099 41 1 2.2391 -1.6342 1.1553 42 1 2.7656 1.0906 4.7720 43 1 3.7489 -0.1091 6.7066 44 1 4.8055 -4.6629 5.9256 45 1 5.7047 -5.1551 8.3396 46 1 4.3976 -1.1602 8.3125 47 1 2.8810 -2.6066 2.5886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135139071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:34 Heat of formation + Delta-G solvation = 84.291163 kcal Electronic energy + Delta-G solvation = -28985.738602 eV Core-core repulsion = 24977.462670 eV Total energy + Delta-G solvation = -4008.275933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.75170 -40.93788 -39.51496 -37.20250 -34.92825 -34.69176 -33.19140 -32.45326 -31.49651 -30.28190 -29.58498 -29.11277 -26.47665 -25.36366 -24.44226 -23.66786 -22.31138 -21.41549 -21.28038 -20.72376 -19.91328 -19.29490 -18.26518 -17.53331 -17.11807 -16.21663 -16.00150 -15.73508 -15.29838 -14.97002 -14.75533 -14.47945 -14.28656 -14.21857 -13.98688 -13.93981 -13.73344 -13.61813 -13.32927 -13.12522 -12.69277 -12.65680 -12.27651 -12.05202 -11.82328 -11.39645 -11.15657 -11.06992 -10.74219 -10.63462 -10.56133 -10.55458 -10.52431 -10.27459 -10.04106 -9.97351 -9.64262 -9.32331 -9.13771 -8.99700 -8.87356 -7.32903 -5.82261 -3.18222 -0.12922 0.61206 1.64198 1.97281 2.60880 2.74496 2.90916 3.30888 3.36056 3.38743 3.41333 3.65540 3.99874 4.22390 4.24145 4.30437 4.45978 4.53646 4.68664 4.74225 4.93592 5.04352 5.06232 5.17715 5.19590 5.36282 5.42334 5.45822 5.49769 5.56326 5.62680 5.72363 5.75195 5.79883 5.86584 6.01791 6.10001 6.15281 6.28128 6.30183 6.42188 6.46754 6.65656 6.75216 6.95801 7.18151 7.30421 7.56257 7.94655 7.96978 8.36821 9.15867 9.88128 10.08112 11.35985 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002603 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.998593 B =10755.621986 C =12781.072798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.178 3.822 6 H 0.053 0.947 7 C -0.168 4.168 8 N -0.750 5.750 9 C -0.243 4.243 10 H 0.088 0.912 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.888 3.112 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.711 5.711 18 C 0.567 3.433 19 O -0.535 6.535 20 C -0.195 4.195 21 C 0.012 3.988 22 C -0.188 4.188 23 C 0.367 3.633 24 N -0.414 5.414 25 C -0.021 4.021 26 C -0.030 4.030 27 N -0.477 5.477 28 C 0.194 3.806 29 N -0.498 5.498 30 C 0.176 3.824 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.401 0.599 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.185 0.815 45 H 0.178 0.822 46 H 0.213 0.787 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 4.308 18.908 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.113 0.887 4 C -0.177 4.177 5 C 0.069 3.931 6 H 0.071 0.929 7 C -0.228 4.228 8 N -0.394 5.394 9 C -0.373 4.373 10 H 0.106 0.894 11 C -0.192 4.192 12 N -0.581 5.581 13 Si 0.718 3.282 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.205 1.205 17 N -0.363 5.363 18 C 0.353 3.647 19 O -0.413 6.413 20 C -0.201 4.201 21 C -0.014 4.014 22 C -0.210 4.210 23 C 0.139 3.861 24 N -0.097 5.097 25 C -0.150 4.150 26 C -0.174 4.174 27 N -0.193 5.193 28 C -0.088 4.088 29 N -0.209 5.209 30 C 0.016 3.984 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.237 0.763 42 H 0.178 0.822 43 H 0.168 0.832 44 H 0.202 0.798 45 H 0.195 0.805 46 H 0.230 0.770 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.056 4.247 19.733 23.511 hybrid contribution -0.786 0.048 -2.147 2.287 sum -12.842 4.295 17.586 22.195 Atomic orbital electron populations 1.22179 0.95298 1.02135 1.02473 1.21107 0.93651 0.97905 0.83301 0.88687 1.22264 0.98056 1.00957 0.96444 1.20162 0.90087 0.90755 0.92134 0.92893 1.22471 1.02160 0.98412 0.99774 1.42854 1.15068 1.62160 1.19290 1.19037 0.89620 1.28266 1.00380 0.89399 1.24706 0.96347 1.00339 0.97767 1.69708 1.17479 1.40540 1.30324 0.86512 0.79596 0.77175 0.84886 1.21194 1.21832 1.20498 1.46039 1.66633 1.13863 1.09754 1.17789 0.78311 0.86093 0.82495 1.90787 1.49997 1.16640 1.83840 1.21084 1.06451 0.95803 0.96748 1.21606 0.89304 1.01094 0.89417 1.21538 1.05007 0.92651 1.01852 1.18377 0.92570 0.88515 0.86685 1.43159 1.45587 1.11510 1.09396 1.23058 1.04535 0.85847 1.01547 1.22449 1.05984 0.98352 0.90639 1.70336 1.16752 1.00363 1.31872 1.25401 1.02701 1.01094 0.79594 1.67020 1.15269 1.39405 0.99221 1.22874 0.89391 0.90995 0.95135 0.92186 0.91485 0.92459 0.91036 0.90423 0.93558 0.94105 0.92475 0.80520 0.93044 0.76289 0.82243 0.83173 0.79758 0.80480 0.77049 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.49 37.15 0.35 -1.24 16 2 C 0.14 1.64 2.40 -67.94 -0.16 1.48 16 3 H 0.10 1.22 5.92 -51.93 -0.31 0.91 16 4 C -0.14 -1.80 4.42 -26.73 -0.12 -1.92 16 5 C 0.18 3.06 2.90 -67.93 -0.20 2.87 16 6 H 0.05 0.94 7.47 -51.93 -0.39 0.55 16 7 C -0.17 -2.84 9.25 37.16 0.34 -2.49 16 8 N -0.75 -16.55 4.90 -53.43 -0.26 -16.81 16 9 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 10 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 11 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 13 Si 0.89 21.53 27.92 -169.99 -4.75 16.79 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.23 6.27 56.52 0.35 -5.87 16 17 N -0.71 -7.51 4.31 -54.81 -0.24 -7.75 16 18 C 0.57 6.55 7.73 -12.41 -0.10 6.45 16 19 O -0.53 -7.65 16.13 5.30 0.09 -7.57 16 20 C -0.19 -1.91 5.89 -104.81 -0.62 -2.52 16 21 C 0.01 0.10 9.70 -38.91 -0.38 -0.28 16 22 C -0.19 -1.40 9.48 -39.32 -0.37 -1.77 16 23 C 0.37 3.57 7.49 -154.51 -1.16 2.41 16 24 N -0.41 -4.02 2.98 -63.81 -0.19 -4.21 16 25 C -0.02 -0.20 11.16 -16.42 -0.18 -0.39 16 26 C -0.03 -0.29 11.85 -17.82 -0.21 -0.51 16 27 N -0.48 -5.18 11.24 -14.45 -0.16 -5.34 16 28 C 0.19 1.68 11.89 -89.53 -1.06 0.62 16 29 N -0.50 -5.32 9.87 -11.99 -0.12 -5.44 16 30 C 0.18 1.67 10.71 -17.14 -0.18 1.48 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.60 6.51 -51.93 -0.34 0.27 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.36 7.87 5.58 -40.82 -0.23 7.64 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 41 H 0.40 3.62 6.66 -40.82 -0.27 3.34 16 42 H 0.16 1.15 7.74 -52.48 -0.41 0.75 16 43 H 0.15 0.62 6.75 -52.49 -0.35 0.27 16 44 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.21 0.96 7.05 -52.49 -0.37 0.59 16 47 H 0.17 1.29 6.43 -52.49 -0.34 0.95 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -35.24 391.64 -9.66 -44.90 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.41 Total: 9.96 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.30 Total: -2.50 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.19 Total: -67.49 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.75 Total: 16.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.24 -9.66 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135139071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.195 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds