Wall clock time and date at job start Wed Apr 1 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47336 * 2 1 4 4 C 1.52994 * 109.47118 * 239.99680 * 2 1 3 5 5 C 1.53007 * 109.47322 * 176.87466 * 4 2 1 6 6 H 1.08998 * 109.46507 * 54.76496 * 5 4 2 7 7 C 1.53000 * 109.46868 * 294.76744 * 5 4 2 8 8 N 1.46496 * 109.47454 * 174.76415 * 5 4 2 9 9 C 1.36935 * 120.00098 * 204.93420 * 8 5 4 10 10 H 1.07992 * 120.00001 * 4.91131 * 9 8 5 11 11 C 1.38819 * 119.99956 * 184.91071 * 9 8 5 12 12 N 1.31620 * 119.99623 * 183.73842 * 11 9 8 13 13 Si 1.86795 * 119.99891 * 3.73164 * 11 9 8 14 14 H 1.48507 * 109.46744 * 91.99568 * 13 11 9 15 15 H 1.48496 * 109.47039 * 211.99205 * 13 11 9 16 16 H 1.48497 * 109.47504 * 331.99392 * 13 11 9 17 17 N 1.46499 * 109.47189 * 119.99571 * 2 1 3 18 18 C 1.34778 * 120.00381 * 274.28583 * 17 2 1 19 19 O 1.21575 * 119.99789 * 4.73444 * 18 17 2 20 20 C 1.47658 * 120.00271 * 184.74565 * 18 17 2 21 21 C 1.40233 * 120.49747 * 175.01105 * 20 18 17 22 22 C 1.38021 * 118.35456 * 179.72216 * 21 20 18 23 23 C 1.39155 * 119.25709 * 0.49153 * 22 21 20 24 24 N 1.39491 * 119.52922 * 179.76735 * 23 22 21 25 25 C 1.37229 * 126.49899 * 184.98210 * 24 23 22 26 26 C 1.34594 * 106.82589 * 180.14282 * 25 24 23 27 27 N 1.34167 * 108.23399 * 359.62326 * 26 25 24 28 28 C 1.30458 * 109.38961 * 0.23870 * 27 26 25 29 29 N 1.32429 * 120.94353 * 359.49698 * 23 22 21 30 30 C 1.31642 * 121.80112 * 0.24912 * 29 23 22 31 31 H 1.08999 * 109.47797 * 300.00372 * 1 2 3 32 32 H 1.09004 * 109.47420 * 60.00569 * 1 2 3 33 33 H 1.09003 * 109.47336 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47411 * 296.87339 * 4 2 1 35 35 H 1.09002 * 109.47534 * 56.87822 * 4 2 1 36 36 H 1.08998 * 109.46987 * 299.99633 * 7 5 4 37 37 H 1.08993 * 109.47039 * 60.00018 * 7 5 4 38 38 H 1.08998 * 109.46863 * 179.97438 * 7 5 4 39 39 H 0.97007 * 120.00007 * 24.92747 * 8 5 4 40 40 H 0.97001 * 119.99653 * 179.97438 * 12 11 9 41 41 H 0.97002 * 119.99854 * 94.27919 * 17 2 1 42 42 H 1.08004 * 120.82122 * 359.97276 * 21 20 18 43 43 H 1.07998 * 120.36916 * 180.26192 * 22 21 20 44 44 H 1.07997 * 126.58666 * 0.02562 * 25 24 23 45 45 H 1.07999 * 125.87948 * 179.88084 * 26 25 24 46 46 H 1.08000 * 125.72973 * 180.02562 * 28 27 26 47 47 H 1.07997 * 119.68046 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5680 -0.6536 -1.2891 6 1 3.9736 -1.0499 -0.3583 7 6 4.0096 0.8014 -1.4593 8 7 4.0628 -1.4491 -2.4154 9 6 5.3303 -1.9664 -2.3837 10 1 5.9366 -1.8558 -1.4970 11 6 5.8358 -2.6329 -3.4916 12 7 7.0252 -3.1938 -3.4359 13 14 4.8279 -2.7338 -5.0610 14 1 5.1787 -1.5960 -5.9485 15 1 5.1214 -4.0127 -5.7563 16 1 3.3825 -2.6730 -4.7260 17 7 2.0183 -0.6905 1.1962 18 6 2.1607 -0.0147 2.3536 19 8 1.8034 1.1449 2.4283 20 6 2.7510 -0.6826 3.5308 21 6 3.0001 0.0383 4.7075 22 6 3.5476 -0.6315 5.7830 23 6 3.8417 -1.9862 5.6625 24 7 4.3996 -2.6676 6.7443 25 6 4.8318 -3.9700 6.7536 26 6 5.2924 -4.2188 7.9936 27 7 5.1562 -3.1016 8.7240 28 6 4.6231 -2.1654 7.9883 29 7 3.5945 -2.6392 4.5372 30 6 3.0686 -2.0408 3.4891 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7231 -1.7639 -1.2216 35 1 1.6316 -0.2409 -2.1383 36 1 3.6039 1.1977 -2.3901 37 1 3.6415 1.3932 -0.6214 38 1 5.0982 0.8497 -1.4874 39 1 3.4925 -1.6095 -3.1835 40 1 7.3783 -3.6599 -4.2099 41 1 2.2391 -1.6342 1.1553 42 1 2.7656 1.0906 4.7720 43 1 3.7489 -0.1091 6.7066 44 1 4.8055 -4.6629 5.9256 45 1 5.7047 -5.1551 8.3396 46 1 4.3976 -1.1602 8.3125 47 1 2.8810 -2.6066 2.5886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135139071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:34 Heat of formation + Delta-G solvation = 62.602258 kcal Electronic energy + Delta-G solvation = -28986.679104 eV Core-core repulsion = 24977.462670 eV Total energy + Delta-G solvation = -4009.216434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44466 -41.71615 -40.37642 -38.44219 -36.30960 -35.43965 -34.11505 -33.86648 -32.71387 -31.21538 -30.68603 -30.19481 -27.62933 -26.14452 -25.48167 -25.09256 -23.20572 -22.37774 -22.01805 -21.69211 -21.20572 -19.99070 -19.71858 -18.85147 -17.91109 -16.99907 -16.82303 -16.70326 -16.39844 -16.17084 -15.87200 -15.72171 -15.29027 -14.97478 -14.89980 -14.78154 -14.75147 -14.60408 -14.38766 -14.26457 -13.91658 -13.82312 -13.44396 -13.34387 -12.98183 -12.84483 -12.71592 -12.25131 -12.04068 -11.90422 -11.83184 -11.60128 -11.47383 -11.38390 -11.29498 -11.20984 -10.98224 -10.79305 -10.18154 -9.92369 -9.57679 -9.29894 -8.00141 -5.33136 -0.84927 -0.04131 0.92776 1.30087 1.38383 1.43834 1.50569 1.78891 2.02782 2.07804 2.50588 2.64753 2.99011 3.31809 3.37542 3.44216 3.54304 3.60477 3.67022 3.82138 3.99914 4.03823 4.14649 4.22551 4.36474 4.40188 4.46314 4.50561 4.59070 4.65277 4.71261 4.79847 4.83721 4.92707 4.97941 5.04047 5.05874 5.11750 5.14409 5.35033 5.39518 5.45672 5.59345 5.60302 5.80808 5.98779 6.24182 6.43754 6.50391 6.86681 7.09699 7.11928 7.88421 8.07806 9.21564 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002603 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.998593 B =10755.621986 C =12781.072798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.044 0.956 7 C -0.161 4.161 8 N -0.751 5.751 9 C -0.223 4.223 10 H 0.052 0.948 11 C -0.068 4.068 12 N -0.987 5.987 13 Si 0.957 3.043 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.243 1.243 17 N -0.708 5.708 18 C 0.569 3.431 19 O -0.565 6.565 20 C -0.204 4.204 21 C 0.012 3.988 22 C -0.174 4.174 23 C 0.352 3.648 24 N -0.420 5.420 25 C -0.040 4.040 26 C -0.037 4.037 27 N -0.510 5.510 28 C 0.201 3.799 29 N -0.521 5.521 30 C 0.171 3.829 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.367 0.633 40 H 0.256 0.744 41 H 0.409 0.591 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.187 0.813 45 H 0.194 0.806 46 H 0.252 0.748 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 5.402 19.103 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.395 5.395 9 C -0.354 4.354 10 H 0.070 0.930 11 C -0.259 4.259 12 N -0.638 5.638 13 Si 0.785 3.215 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.167 1.167 17 N -0.360 5.360 18 C 0.356 3.644 19 O -0.445 6.445 20 C -0.210 4.210 21 C -0.015 4.015 22 C -0.195 4.195 23 C 0.124 3.876 24 N -0.103 5.103 25 C -0.169 4.169 26 C -0.181 4.181 27 N -0.227 5.227 28 C -0.080 4.080 29 N -0.233 5.233 30 C 0.012 3.988 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.201 0.799 40 H 0.065 0.935 41 H 0.246 0.754 42 H 0.190 0.810 43 H 0.205 0.795 44 H 0.204 0.796 45 H 0.211 0.789 46 H 0.268 0.732 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.637 5.351 19.952 25.317 hybrid contribution 0.044 -0.240 -2.064 2.079 sum -14.593 5.110 17.887 23.644 Atomic orbital electron populations 1.22105 0.93575 1.02950 1.02697 1.21014 0.94865 0.96909 0.82713 0.89962 1.22118 0.94252 1.02068 0.97897 1.20391 0.93155 0.90031 0.90047 0.93796 1.22356 1.00042 0.98457 1.01177 1.42844 1.13299 1.62503 1.20852 1.18967 0.91008 1.26735 0.98721 0.93035 1.25541 0.97755 1.00951 1.01663 1.69901 1.19998 1.42586 1.31281 0.85372 0.79867 0.76395 0.79853 1.21289 1.22715 1.16714 1.46035 1.66229 1.14238 1.09474 1.17985 0.77767 0.85705 0.82955 1.90768 1.51467 1.17877 1.84394 1.21031 1.07198 0.96001 0.96782 1.21833 0.88867 1.01666 0.89094 1.21861 1.03212 0.91603 1.02860 1.18682 0.92947 0.89451 0.86507 1.43287 1.45693 1.11518 1.09781 1.23212 1.05370 0.86428 1.01843 1.22788 1.05734 0.98917 0.90613 1.70348 1.18316 1.01225 1.32858 1.26206 1.00837 1.02094 0.78830 1.66986 1.16067 1.40316 0.99949 1.23039 0.89304 0.91103 0.95387 0.93036 0.90207 0.91339 0.90094 0.89034 0.92696 0.91990 0.95647 0.79902 0.93533 0.75410 0.81012 0.79532 0.79566 0.78927 0.73244 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.49 71.98 0.68 -1.91 16 2 C 0.15 3.04 2.40 44.99 0.11 3.15 16 3 H 0.08 1.94 5.92 -2.39 -0.01 1.92 16 4 C -0.12 -2.88 4.42 30.59 0.14 -2.75 16 5 C 0.17 5.66 2.90 44.99 0.13 5.80 16 6 H 0.04 1.54 7.47 -2.39 -0.02 1.52 16 7 C -0.16 -5.23 9.25 71.98 0.67 -4.56 16 8 N -0.75 -32.10 4.90 -322.94 -1.58 -33.68 16 9 C -0.22 -12.18 10.41 84.04 0.87 -11.31 16 10 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 11 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 12 N -0.99 -62.54 13.97 21.65 0.30 -62.23 16 13 Si 0.96 44.07 27.92 68.60 1.92 45.98 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 15 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.24 -9.62 6.27 99.48 0.62 -9.00 16 17 N -0.71 -13.91 4.31 -445.60 -1.92 -15.83 16 18 C 0.57 12.51 7.73 86.73 0.67 13.18 16 19 O -0.56 -15.55 16.13 -3.95 -0.06 -15.62 16 20 C -0.20 -3.79 5.89 -19.99 -0.12 -3.90 16 21 C 0.01 0.18 9.70 22.70 0.22 0.40 16 22 C -0.17 -2.18 9.48 22.44 0.21 -1.96 16 23 C 0.35 6.42 7.49 132.89 1.00 7.42 16 24 N -0.42 -7.73 2.98 -355.78 -1.06 -8.79 16 25 C -0.04 -0.78 11.16 83.01 0.93 0.15 16 26 C -0.04 -0.72 11.85 83.50 0.99 0.27 16 27 N -0.51 -10.62 11.24 -199.64 -2.24 -12.86 16 28 C 0.20 3.14 11.89 179.97 2.14 5.28 16 29 N -0.52 -10.94 9.87 -191.85 -1.89 -12.84 16 30 C 0.17 3.16 10.71 85.04 0.91 4.07 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.75 6.51 -2.39 -0.02 1.73 16 38 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.37 14.90 5.58 -92.70 -0.52 14.39 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.41 6.80 6.66 -92.71 -0.62 6.18 16 42 H 0.17 2.12 7.74 -2.91 -0.02 2.10 16 43 H 0.19 0.82 6.75 -2.91 -0.02 0.80 16 44 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 46 H 0.25 1.41 7.05 -2.91 -0.02 1.39 16 47 H 0.18 2.67 6.43 -2.91 -0.02 2.65 16 Total: -1.00 -78.25 391.64 3.26 -74.99 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.20 Total: 31.00 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 10.01 Total: 9.88 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -8.40 Total: -146.23 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.06 Total: -15.62 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.92 Total: 45.98 kcal Total: -78.25 3.26 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135139071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.588 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds