Wall clock time and date at job start Wed Apr 1 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.52993 * 109.47378 * 120.00021 * 2 1 3 5 5 C 1.53001 * 109.47633 * 184.99736 * 4 2 1 6 6 H 1.09004 * 109.47324 * 305.00569 * 5 4 2 7 7 C 1.52999 * 109.47568 * 185.00128 * 5 4 2 8 8 N 1.46503 * 109.46529 * 64.99828 * 5 4 2 9 9 C 1.34779 * 119.99542 * 204.99871 * 8 5 4 10 10 O 1.21569 * 120.00682 * 0.02562 * 9 8 5 11 11 C 1.47673 * 119.99548 * 180.02562 * 9 8 5 12 12 C 1.40230 * 120.49463 * 180.02562 * 11 9 8 13 13 C 1.38033 * 118.35486 * 179.97438 * 12 11 9 14 14 C 1.39157 * 119.25653 * 0.02562 * 13 12 11 15 15 N 1.39484 * 119.52942 * 180.02562 * 14 13 12 16 16 C 1.35922 * 126.10819 * 179.97438 * 15 14 13 17 17 C 1.35236 * 107.60571 * 179.70392 * 16 15 14 18 18 C 1.40001 * 107.97427 * 0.43186 * 17 16 15 19 19 N 1.30801 * 108.37460 * 359.55796 * 18 17 16 20 20 N 1.32450 * 120.93878 * 0.27094 * 14 13 12 21 21 C 1.31623 * 121.80068 * 359.43397 * 20 14 13 22 22 N 1.46503 * 109.46930 * 240.00135 * 2 1 3 23 23 C 1.36936 * 120.00087 * 85.00001 * 22 2 1 24 24 H 1.08004 * 119.99892 * 0.02562 * 23 22 2 25 25 C 1.38806 * 120.00252 * 179.97438 * 23 22 2 26 26 N 1.31620 * 119.99941 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00164 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.46587 * 90.00556 * 27 25 23 29 29 H 1.48502 * 109.46892 * 210.00102 * 27 25 23 30 30 H 1.48497 * 109.47112 * 330.00293 * 27 25 23 31 31 H 1.09000 * 109.47474 * 59.99556 * 1 2 3 32 32 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47326 * 299.99691 * 1 2 3 34 34 H 1.09002 * 109.47167 * 65.00067 * 4 2 1 35 35 H 1.08998 * 109.47297 * 305.00478 * 4 2 1 36 36 H 1.09003 * 109.47051 * 300.00003 * 7 5 4 37 37 H 1.08998 * 109.46812 * 60.00193 * 7 5 4 38 38 H 1.08998 * 109.46964 * 180.02562 * 7 5 4 39 39 H 0.97000 * 120.00366 * 25.00498 * 8 5 4 40 40 H 1.08002 * 120.81858 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.36837 * 179.97438 * 13 12 11 42 42 H 1.08005 * 126.19187 * 0.02562 * 16 15 14 43 43 H 1.08006 * 126.01432 * 180.29108 * 17 16 15 44 44 H 1.08002 * 125.81619 * 179.83036 * 18 17 16 45 45 H 1.07996 * 119.68216 * 180.28877 * 21 20 14 46 46 H 0.97001 * 120.00029 * 264.99331 * 22 2 1 47 47 H 0.97007 * 120.00194 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9954 -0.9922 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9375 0.4322 0.5719 11 6 5.5475 2.6273 1.2673 12 6 6.8070 3.0799 0.8485 13 6 7.1218 4.4104 1.0383 14 6 6.1876 5.2520 1.6344 15 7 6.4997 6.5976 1.8285 16 6 5.6922 7.5336 2.3936 17 6 6.3672 8.7055 2.4008 18 6 7.6199 8.4861 1.8154 19 7 7.7015 7.2254 1.4764 20 7 5.0082 4.7925 2.0245 21 6 4.6649 3.5328 1.8576 22 7 2.0182 -0.6906 -1.1962 23 6 2.1490 -0.0075 -2.3758 24 1 1.8925 1.0406 -2.4242 25 6 2.6121 -0.6616 -3.5091 26 7 2.9251 -1.9387 -3.4500 27 14 2.7898 0.2701 -5.1184 28 1 4.1517 0.8560 -5.2032 29 1 2.5801 -0.6616 -6.2555 30 1 1.7790 1.3565 -5.1756 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7516 -1.7715 1.2055 35 1 1.6053 -0.2618 2.1369 36 1 3.6546 -1.0594 3.4193 37 1 3.8001 -2.4820 2.3593 38 1 5.1714 -1.3611 2.5385 39 1 3.3284 1.4129 1.9027 40 1 7.5130 2.4042 0.3888 41 1 8.0828 4.7936 0.7284 42 1 4.6945 7.3698 2.7733 43 1 6.0030 9.6458 2.7877 44 1 8.3897 9.2300 1.6725 45 1 3.6923 3.1958 2.1845 46 1 2.2490 -1.6318 -1.1527 47 1 3.2485 -2.3960 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135160849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:25 Heat of formation + Delta-G solvation = 73.806628 kcal Electronic energy + Delta-G solvation = -29293.342418 eV Core-core repulsion = 25284.611842 eV Total energy + Delta-G solvation = -4008.730576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65837 -41.56911 -40.26252 -38.29397 -36.10853 -34.90541 -34.04614 -33.74898 -32.39505 -31.34922 -30.53129 -30.17466 -27.57242 -26.00650 -25.62309 -25.07649 -23.15995 -22.22039 -21.86631 -21.56395 -21.18014 -19.65885 -19.32926 -18.76510 -17.90300 -16.94073 -16.74864 -16.55412 -16.33834 -16.03331 -15.81749 -15.60660 -15.41753 -15.16780 -14.71188 -14.52632 -14.51041 -14.33120 -14.20328 -13.93572 -13.70304 -13.57445 -13.34108 -13.16031 -12.94559 -12.79240 -12.64198 -12.25107 -12.18393 -11.94567 -11.80979 -11.59521 -11.53914 -11.40174 -11.35692 -11.19985 -10.91379 -10.79986 -10.30298 -10.04359 -9.41049 -8.93366 -7.91796 -5.16409 -0.84167 -0.05983 0.81610 0.99092 1.41423 1.43847 1.50438 1.79116 1.84656 2.12465 2.55833 2.66203 3.02524 3.31692 3.42867 3.51467 3.65872 3.77737 3.87080 4.01270 4.03515 4.06697 4.16087 4.33375 4.42427 4.49146 4.57426 4.64332 4.71431 4.77208 4.82578 4.85729 4.87097 4.96585 5.01784 5.07492 5.13236 5.13872 5.26222 5.38273 5.43973 5.51794 5.55419 5.63427 5.67191 5.93193 6.20038 6.31913 6.54618 6.67248 7.23965 7.37732 8.19071 8.37780 9.31968 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.002815 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.656417 B = 9945.634285 C =11045.949438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.045 0.955 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.049 0.951 7 C -0.152 4.152 8 N -0.695 5.695 9 C 0.562 3.438 10 O -0.578 6.578 11 C -0.207 4.207 12 C 0.002 3.998 13 C -0.176 4.176 14 C 0.383 3.617 15 N -0.346 5.346 16 C 0.062 3.938 17 C -0.254 4.254 18 C 0.071 3.929 19 N -0.323 5.323 20 N -0.512 5.512 21 C 0.184 3.816 22 N -0.731 5.731 23 C -0.222 4.222 24 H 0.069 0.931 25 C -0.078 4.078 26 N -0.968 5.968 27 Si 0.957 3.043 28 H -0.297 1.297 29 H -0.296 1.296 30 H -0.268 1.268 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.412 0.588 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.199 0.801 43 H 0.190 0.810 44 H 0.229 0.771 45 H 0.205 0.795 46 H 0.370 0.630 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 18.916 20.143 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.063 0.937 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.067 0.933 7 C -0.210 4.210 8 N -0.347 5.347 9 C 0.349 3.651 10 O -0.458 6.458 11 C -0.213 4.213 12 C -0.025 4.025 13 C -0.198 4.198 14 C 0.155 3.845 15 N -0.124 5.124 16 C -0.077 4.077 17 C -0.282 4.282 18 C -0.117 4.117 19 N -0.141 5.141 20 N -0.225 5.225 21 C 0.024 3.976 22 N -0.372 5.372 23 C -0.354 4.354 24 H 0.087 0.913 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.788 3.212 28 H -0.225 1.225 29 H -0.222 1.222 30 H -0.193 1.193 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.170 0.830 41 H 0.176 0.824 42 H 0.215 0.785 43 H 0.207 0.793 44 H 0.245 0.755 45 H 0.221 0.779 46 H 0.202 0.798 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.652 18.127 19.547 26.907 hybrid contribution 0.262 -0.020 -1.463 1.486 sum 3.914 18.106 18.084 25.888 Atomic orbital electron populations 1.22312 0.97745 1.00855 1.00748 1.20553 0.92638 0.95374 0.86033 0.93702 1.22099 0.92511 1.02451 0.98620 1.20892 0.95803 0.80481 0.98599 0.93276 1.22090 1.00433 1.00300 0.98175 1.45731 1.15613 1.11886 1.61454 1.18153 0.82414 0.87051 0.77526 1.90797 1.52756 1.57190 1.45098 1.20961 0.97828 0.94930 1.07602 1.21720 0.95025 0.94711 0.90996 1.21579 1.01956 0.92902 1.03385 1.18080 0.90691 0.82526 0.93201 1.45902 1.13209 1.05478 1.47838 1.23478 0.98833 0.88517 0.96896 1.22149 0.95353 1.00030 1.10620 1.24951 0.99088 0.93149 0.94549 1.77486 1.01739 1.09955 1.24968 1.66963 1.16367 1.17352 1.21847 1.23135 0.99005 0.85296 0.90129 1.42612 1.78163 1.10121 1.06270 1.19482 1.33745 0.93714 0.88505 0.91293 1.25396 1.03749 0.96816 1.01075 1.69791 1.53178 1.10006 1.29002 0.85360 0.77467 0.77729 0.80634 1.22523 1.22226 1.19330 0.95348 0.93983 0.90282 0.90436 0.87075 0.89684 0.91132 0.94352 0.75002 0.83030 0.82392 0.78454 0.79328 0.75451 0.77889 0.79808 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.63 2.84 44.99 0.13 5.76 16 3 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 4 C -0.12 -3.09 4.29 30.59 0.13 -2.96 16 5 C 0.15 4.39 2.52 44.99 0.11 4.50 16 6 H 0.05 2.10 7.05 -2.38 -0.02 2.09 16 7 C -0.15 -3.72 9.48 71.98 0.68 -3.04 16 8 N -0.70 -18.13 4.40 -445.56 -1.96 -20.09 16 9 C 0.56 18.10 7.74 86.74 0.67 18.77 16 10 O -0.58 -24.65 16.08 -3.93 -0.06 -24.71 16 11 C -0.21 -5.42 5.89 -19.98 -0.12 -5.54 16 12 C 0.00 0.05 9.70 22.71 0.22 0.27 16 13 C -0.18 -4.28 9.68 22.44 0.22 -4.07 16 14 C 0.38 9.29 7.55 132.89 1.00 10.30 16 15 N -0.35 -7.79 3.80 -192.18 -0.73 -8.52 16 16 C 0.06 1.04 11.09 83.37 0.92 1.96 16 17 C -0.25 -3.12 10.80 22.00 0.24 -2.88 16 18 C 0.07 1.00 12.02 85.27 1.02 2.02 16 19 N -0.32 -7.02 11.81 -56.95 -0.67 -7.69 16 20 N -0.51 -11.36 9.83 -191.85 -1.89 -13.25 16 21 C 0.18 3.74 10.71 85.04 0.91 4.65 16 22 N -0.73 -35.57 4.49 -322.96 -1.45 -37.02 16 23 C -0.22 -12.36 9.93 84.03 0.83 -11.53 16 24 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 25 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 26 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 27 Si 0.96 48.21 29.55 68.60 2.03 50.24 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 30 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 7.20 6.66 -92.71 -0.62 6.58 16 40 H 0.15 4.07 7.73 -2.91 -0.02 4.05 16 41 H 0.16 3.58 7.67 -2.91 -0.02 3.56 16 42 H 0.20 2.51 8.05 -2.91 -0.02 2.49 16 43 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.20 2.49 6.41 -2.91 -0.02 2.48 16 46 H 0.37 19.75 7.80 -92.71 -0.72 19.03 16 47 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -81.51 399.87 3.34 -78.17 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.34 Total: 33.79 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 8.13 Total: 9.86 kcal Atomic # 7 Polarization: -140.92 SS G_CDS: -6.42 Total: -147.34 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -81.51 3.34 -78.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135160849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.976 kcal (2) G-P(sol) polarization free energy of solvation -81.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds