Wall clock time and date at job start Wed Apr 1 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21556 * 120.00253 * 359.97438 * 9 8 5 11 11 C 1.47859 * 119.99948 * 180.02562 * 9 8 5 12 12 C 1.39653 * 120.08758 * 359.72046 * 11 9 8 13 13 C 1.38022 * 120.09793 * 179.74614 * 12 11 9 14 14 C 1.38165 * 120.27187 * 0.55188 * 13 12 11 15 15 C 1.39409 * 120.16844 * 359.70486 * 14 13 12 16 16 C 1.48422 * 120.04523 * 180.02562 * 15 14 13 17 17 N 1.33968 * 125.65318 * 359.97438 * 16 15 14 18 18 C 1.30680 * 109.78434 * 179.97438 * 17 16 15 19 19 N 1.34524 * 108.28965 * 359.97438 * 18 17 16 20 20 H 0.97001 * 126.74538 * 180.02562 * 19 18 17 21 21 N 1.31493 * 125.64689 * 179.66705 * 16 15 14 22 22 C 1.39097 * 119.90429 * 0.02562 * 15 14 13 23 23 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 24 24 C 1.36936 * 120.00314 * 274.99849 * 23 2 1 25 25 H 1.08001 * 120.00159 * 0.02562 * 24 23 2 26 26 C 1.38811 * 119.99842 * 180.02562 * 24 23 2 27 27 N 1.31624 * 119.99540 * 179.72505 * 26 24 23 28 28 Si 1.86800 * 120.00451 * 0.02562 * 26 24 23 29 29 H 1.48501 * 109.46758 * 269.72270 * 28 26 24 30 30 H 1.48499 * 109.47026 * 29.72118 * 28 26 24 31 31 H 1.48496 * 109.47474 * 149.72153 * 28 26 24 32 32 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 33 33 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 35 35 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 36 36 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 37 37 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 38 38 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 39 39 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 40 40 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 41 41 H 1.07998 * 119.95237 * 0.02562 * 12 11 9 42 42 H 1.08003 * 119.86362 * 180.25576 * 13 12 11 43 43 H 1.07998 * 119.91390 * 179.72070 * 14 13 12 44 44 H 1.08000 * 125.85738 * 179.97438 * 18 17 16 45 45 H 1.07999 * 120.13678 * 179.97438 * 22 15 14 46 46 H 0.97000 * 120.00040 * 94.99981 * 23 2 1 47 47 H 0.96999 * 119.99889 * 180.27497 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9374 0.4324 -0.5721 11 6 5.5476 2.6294 -1.2667 12 6 4.6592 3.5274 -1.8620 13 6 5.0177 4.8502 -2.0253 14 6 6.2600 5.2912 -1.6119 15 6 7.1578 4.4033 -1.0211 16 6 8.4915 4.8802 -0.5775 17 7 8.9493 6.1342 -0.6893 18 6 10.1586 6.2089 -0.1998 19 7 10.5104 4.9888 0.2443 20 1 11.3525 4.7423 0.6580 21 7 9.4173 4.1429 -0.0044 22 6 6.8018 3.0698 -0.8479 23 7 2.0183 -0.6905 1.1962 24 6 2.1491 -0.0074 2.3757 25 1 1.8919 1.0404 2.4243 26 6 2.6123 -0.6617 3.5090 27 7 2.7431 -0.0037 4.6414 28 14 3.0578 -2.4738 3.4249 29 1 1.8628 -3.2929 3.7507 30 1 3.5267 -2.8052 2.0554 31 1 4.1381 -2.7639 4.4016 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.7517 -1.7715 -1.2056 36 1 1.6054 -0.2617 -2.1370 37 1 3.8001 -2.4819 -2.3594 38 1 3.6546 -1.0594 -3.4194 39 1 5.1715 -1.3610 -2.5385 40 1 3.3285 1.4129 -1.9028 41 1 3.6884 3.1873 -2.1911 42 1 4.3260 5.5423 -2.4825 43 1 6.5363 6.3266 -1.7466 44 1 10.7707 7.0978 -0.1587 45 1 7.4945 2.3786 -0.3910 46 1 2.2490 -1.6317 1.1527 47 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135167536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:41 Heat of formation + Delta-G solvation = 86.188868 kcal Electronic energy + Delta-G solvation = -29370.495401 eV Core-core repulsion = 25362.301759 eV Total energy + Delta-G solvation = -4008.193642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30999 -40.10024 -38.46717 -36.84100 -34.56825 -33.51086 -32.25446 -32.03226 -31.50587 -30.45822 -29.82180 -29.15183 -26.39153 -24.28607 -24.12952 -23.25025 -22.55961 -21.32089 -20.90294 -19.99125 -19.76689 -18.75713 -17.73698 -17.36944 -16.30986 -15.90530 -15.73195 -15.48207 -15.13316 -14.86732 -14.53610 -14.27511 -14.06468 -13.71231 -13.60931 -13.53455 -13.12294 -12.69641 -12.60084 -12.42261 -12.35239 -12.06151 -11.94405 -11.85594 -11.67973 -11.39649 -11.19093 -10.88322 -10.73635 -10.62813 -10.44192 -10.37131 -10.24227 -10.23200 -9.91238 -9.63250 -9.49843 -9.05641 -8.84695 -8.77985 -8.67393 -7.17855 -5.67662 -3.02392 0.60402 1.02474 1.53033 2.35096 2.60059 3.21262 3.34190 3.45540 3.48644 3.53653 3.72123 3.95721 4.30791 4.58807 4.68548 4.73840 4.83968 4.95716 5.03409 5.17102 5.28357 5.32982 5.39722 5.54824 5.56690 5.63924 5.78562 5.80321 5.85098 5.88173 5.91231 5.96047 6.04082 6.21314 6.22475 6.25314 6.30422 6.32949 6.37001 6.46171 6.58516 6.68091 6.72856 6.78354 6.87289 7.02310 7.73704 7.77542 8.07577 8.51047 8.52333 9.29768 10.02672 10.21583 11.50997 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.002988 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.143982 B = 9367.117426 C =10490.710391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.101 0.899 7 C -0.162 4.162 8 N -0.711 5.711 9 C 0.560 3.440 10 O -0.529 6.529 11 C -0.129 4.129 12 C -0.069 4.069 13 C -0.131 4.131 14 C -0.055 4.055 15 C -0.029 4.029 16 C 0.272 3.728 17 N -0.536 5.536 18 C 0.263 3.737 19 N -0.483 5.483 20 H 0.444 0.556 21 N -0.297 5.297 22 C -0.024 4.024 23 N -0.745 5.745 24 C -0.237 4.237 25 H 0.088 0.912 26 C 0.005 3.995 27 N -0.935 5.935 28 Si 0.882 3.118 29 H -0.286 1.286 30 H -0.276 1.276 31 H -0.292 1.292 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.394 0.606 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.225 0.775 45 H 0.144 0.856 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 11.980 -18.482 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.039 3.961 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.363 5.363 9 C 0.347 3.653 10 O -0.405 6.405 11 C -0.132 4.132 12 C -0.088 4.088 13 C -0.149 4.149 14 C -0.075 4.075 15 C -0.031 4.031 16 C -0.008 4.008 17 N -0.264 5.264 18 C -0.036 4.036 19 N -0.202 5.202 20 H 0.289 0.711 21 N -0.126 5.126 22 C -0.045 4.045 23 N -0.388 5.388 24 C -0.367 4.367 25 H 0.106 0.894 26 C -0.191 4.191 27 N -0.583 5.583 28 Si 0.713 3.287 29 H -0.213 1.213 30 H -0.202 1.202 31 H -0.219 1.219 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.229 0.771 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.241 0.759 45 H 0.162 0.838 46 H 0.192 0.808 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.231 11.103 -17.913 23.427 hybrid contribution 0.795 -0.871 0.379 1.238 sum 11.026 10.232 -17.534 23.102 Atomic orbital electron populations 1.22423 0.98983 1.00823 1.00318 1.20202 0.91754 0.95871 0.85518 0.92752 1.22226 0.93767 1.02192 0.99158 1.21029 0.95059 0.80279 0.99765 0.88091 1.22195 1.01728 1.00001 0.98087 1.45834 1.16275 1.11557 1.62601 1.18081 0.82121 0.87075 0.78040 1.90794 1.51218 1.55923 1.42596 1.19907 0.95544 0.94204 1.03518 1.21461 0.98501 0.93344 0.95543 1.21026 0.96578 0.95651 1.01648 1.21350 0.92356 0.99822 0.93955 1.17313 0.89316 0.93456 1.03040 1.22261 0.94605 0.87434 0.96464 1.70484 1.10019 1.20492 1.25365 1.26089 0.93149 0.90905 0.93481 1.48148 1.16158 1.07655 1.48226 0.71051 1.78365 0.95747 1.16056 1.22397 1.21305 0.95235 0.94232 0.93711 1.42771 1.79569 1.09344 1.07141 1.19004 1.36745 0.95403 0.85511 0.89445 1.24638 1.01407 0.97386 0.95628 1.69700 1.52737 1.35469 1.00421 0.86570 0.77921 0.87014 0.77184 1.21336 1.20211 1.21874 0.94365 0.93645 0.92416 0.90679 0.91516 0.91834 0.92876 0.92355 0.77071 0.85200 0.84708 0.84353 0.75882 0.83786 0.80763 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.49 37.16 0.35 -2.40 16 2 C 0.18 3.20 2.84 -67.93 -0.19 3.01 16 3 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 4 C -0.13 -1.92 4.29 -26.74 -0.11 -2.03 16 5 C 0.14 2.23 2.52 -67.93 -0.17 2.06 16 6 H 0.10 2.06 7.05 -51.93 -0.37 1.69 16 7 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 8 N -0.71 -10.38 4.40 -54.74 -0.24 -10.62 16 9 C 0.56 9.72 7.74 -12.32 -0.10 9.62 16 10 O -0.53 -11.44 16.00 5.32 0.09 -11.36 16 11 C -0.13 -1.89 5.87 -105.01 -0.62 -2.51 16 12 C -0.07 -0.76 9.54 -39.13 -0.37 -1.14 16 13 C -0.13 -1.28 10.02 -39.69 -0.40 -1.67 16 14 C -0.05 -0.61 9.68 -39.17 -0.38 -0.99 16 15 C -0.03 -0.39 5.87 -104.95 -0.62 -1.01 16 16 C 0.27 3.70 7.77 -156.63 -1.22 2.49 16 17 N -0.54 -6.13 10.81 -12.38 -0.13 -6.27 16 18 C 0.26 1.92 13.11 -90.70 -1.19 0.73 16 19 N -0.48 -4.02 7.44 29.52 0.22 -3.80 16 20 H 0.44 1.94 8.96 -182.34 -1.63 0.30 16 21 N -0.30 -4.01 12.42 32.10 0.40 -3.61 16 22 C -0.02 -0.37 9.22 -38.84 -0.36 -0.72 16 23 N -0.75 -17.48 4.30 -53.43 -0.23 -17.71 16 24 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 25 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 26 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 27 N -0.94 -30.34 13.97 55.49 0.78 -29.57 16 28 Si 0.88 23.13 27.74 -169.99 -4.72 18.41 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 30 H -0.28 -6.85 6.51 56.52 0.37 -6.48 16 31 H -0.29 -7.86 7.11 56.52 0.40 -7.45 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.39 4.44 6.63 -40.82 -0.27 4.17 16 41 H 0.13 1.08 6.39 -52.49 -0.34 0.74 16 42 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.14 1.34 7.82 -52.49 -0.41 0.93 16 44 H 0.23 0.35 8.06 -52.49 -0.42 -0.07 16 45 H 0.14 2.45 7.42 -52.49 -0.39 2.06 16 46 H 0.36 8.43 5.65 -40.82 -0.23 8.20 16 47 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -39.64 396.28 -10.99 -50.63 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.85 Total: 11.12 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -5.27 Total: -3.20 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: 0.79 Total: -71.58 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.72 Total: 18.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.64 -10.99 -50.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135167536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.822 kcal (2) G-P(sol) polarization free energy of solvation -39.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds