Wall clock time and date at job start Wed Apr 1 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21556 * 120.00253 * 359.97438 * 9 8 5 11 11 C 1.47859 * 119.99948 * 180.02562 * 9 8 5 12 12 C 1.39653 * 120.08758 * 359.72046 * 11 9 8 13 13 C 1.38022 * 120.09793 * 179.74614 * 12 11 9 14 14 C 1.38165 * 120.27187 * 0.55188 * 13 12 11 15 15 C 1.39409 * 120.16844 * 359.70486 * 14 13 12 16 16 C 1.48422 * 120.04523 * 180.02562 * 15 14 13 17 17 N 1.33968 * 125.65318 * 359.97438 * 16 15 14 18 18 C 1.30680 * 109.78434 * 179.97438 * 17 16 15 19 19 N 1.34524 * 108.28965 * 359.97438 * 18 17 16 20 20 H 0.97001 * 126.74538 * 180.02562 * 19 18 17 21 21 N 1.31493 * 125.64689 * 179.66705 * 16 15 14 22 22 C 1.39097 * 119.90429 * 0.02562 * 15 14 13 23 23 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 24 24 C 1.36936 * 120.00314 * 274.99849 * 23 2 1 25 25 H 1.08001 * 120.00159 * 0.02562 * 24 23 2 26 26 C 1.38811 * 119.99842 * 180.02562 * 24 23 2 27 27 N 1.31624 * 119.99540 * 179.72505 * 26 24 23 28 28 Si 1.86800 * 120.00451 * 0.02562 * 26 24 23 29 29 H 1.48501 * 109.46758 * 269.72270 * 28 26 24 30 30 H 1.48499 * 109.47026 * 29.72118 * 28 26 24 31 31 H 1.48496 * 109.47474 * 149.72153 * 28 26 24 32 32 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 33 33 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 35 35 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 36 36 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 37 37 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 38 38 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 39 39 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 40 40 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 41 41 H 1.07998 * 119.95237 * 0.02562 * 12 11 9 42 42 H 1.08003 * 119.86362 * 180.25576 * 13 12 11 43 43 H 1.07998 * 119.91390 * 179.72070 * 14 13 12 44 44 H 1.08000 * 125.85738 * 179.97438 * 18 17 16 45 45 H 1.07999 * 120.13678 * 179.97438 * 22 15 14 46 46 H 0.97000 * 120.00040 * 94.99981 * 23 2 1 47 47 H 0.96999 * 119.99889 * 180.27497 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9374 0.4324 -0.5721 11 6 5.5476 2.6294 -1.2667 12 6 4.6592 3.5274 -1.8620 13 6 5.0177 4.8502 -2.0253 14 6 6.2600 5.2912 -1.6119 15 6 7.1578 4.4033 -1.0211 16 6 8.4915 4.8802 -0.5775 17 7 8.9493 6.1342 -0.6893 18 6 10.1586 6.2089 -0.1998 19 7 10.5104 4.9888 0.2443 20 1 11.3525 4.7423 0.6580 21 7 9.4173 4.1429 -0.0044 22 6 6.8018 3.0698 -0.8479 23 7 2.0183 -0.6905 1.1962 24 6 2.1491 -0.0074 2.3757 25 1 1.8919 1.0404 2.4243 26 6 2.6123 -0.6617 3.5090 27 7 2.7431 -0.0037 4.6414 28 14 3.0578 -2.4738 3.4249 29 1 1.8628 -3.2929 3.7507 30 1 3.5267 -2.8052 2.0554 31 1 4.1381 -2.7639 4.4016 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.7517 -1.7715 -1.2056 36 1 1.6054 -0.2617 -2.1370 37 1 3.8001 -2.4819 -2.3594 38 1 3.6546 -1.0594 -3.4194 39 1 5.1715 -1.3610 -2.5385 40 1 3.3285 1.4129 -1.9028 41 1 3.6884 3.1873 -2.1911 42 1 4.3260 5.5423 -2.4825 43 1 6.5363 6.3266 -1.7466 44 1 10.7707 7.0978 -0.1587 45 1 7.4945 2.3786 -0.3910 46 1 2.2490 -1.6317 1.1527 47 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135167536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:41 Heat of formation + Delta-G solvation = 57.749559 kcal Electronic energy + Delta-G solvation = -29371.728622 eV Core-core repulsion = 25362.301759 eV Total energy + Delta-G solvation = -4009.426863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08768 -41.30145 -39.55716 -38.32072 -36.16914 -34.45781 -34.01181 -32.96785 -32.71983 -31.60713 -31.03215 -30.64406 -27.59647 -25.48712 -25.17025 -25.03709 -23.37921 -22.33626 -22.10495 -21.36382 -21.05288 -19.76731 -19.46561 -18.52668 -17.51768 -16.97590 -16.71170 -16.53978 -16.33953 -16.16307 -16.03450 -15.64408 -15.30283 -15.07071 -14.79114 -14.61891 -14.56112 -14.31560 -14.02379 -13.73929 -13.41306 -13.23283 -13.20760 -12.99515 -12.80117 -12.76559 -12.62625 -12.39075 -12.35372 -11.99124 -11.86167 -11.67909 -11.54550 -11.43236 -11.20900 -11.07763 -11.00836 -10.94228 -10.17148 -9.90805 -9.64339 -9.25938 -8.01568 -5.30997 -0.33118 -0.00787 0.80702 1.31755 1.37618 1.42515 1.69151 1.72136 2.08152 2.19507 2.47665 2.91082 2.96594 3.31703 3.53059 3.67131 3.70164 3.85243 3.92114 4.00196 4.10172 4.17909 4.23149 4.36382 4.48597 4.53226 4.65708 4.68415 4.78550 4.84044 4.88543 4.92450 5.02166 5.06266 5.10420 5.10848 5.20853 5.28192 5.33825 5.37656 5.40287 5.42263 5.60054 5.64125 5.80339 5.81303 6.20499 6.23690 6.59528 6.96316 7.11757 7.28319 7.91261 8.06005 9.20825 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.002988 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.143982 B = 9367.117426 C =10490.710391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.044 0.956 4 C -0.120 4.120 5 C 0.139 3.861 6 H 0.046 0.954 7 C -0.152 4.152 8 N -0.696 5.696 9 C 0.551 3.449 10 O -0.589 6.589 11 C -0.151 4.151 12 C -0.061 4.061 13 C -0.115 4.115 14 C -0.048 4.048 15 C -0.043 4.043 16 C 0.254 3.746 17 N -0.562 5.562 18 C 0.283 3.717 19 N -0.475 5.475 20 H 0.459 0.541 21 N -0.349 5.349 22 C -0.050 4.050 23 N -0.749 5.749 24 C -0.210 4.210 25 H 0.055 0.945 26 C -0.070 4.070 27 N -0.988 5.988 28 Si 0.947 3.053 29 H -0.273 1.273 30 H -0.257 1.257 31 H -0.305 1.305 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.413 0.587 41 H 0.164 0.836 42 H 0.181 0.819 43 H 0.157 0.843 44 H 0.283 0.717 45 H 0.108 0.892 46 H 0.361 0.639 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.421 13.315 -22.212 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.062 0.938 4 C -0.158 4.158 5 C 0.035 3.965 6 H 0.065 0.935 7 C -0.210 4.210 8 N -0.348 5.348 9 C 0.340 3.660 10 O -0.470 6.470 11 C -0.154 4.154 12 C -0.080 4.080 13 C -0.132 4.132 14 C -0.068 4.068 15 C -0.045 4.045 16 C -0.026 4.026 17 N -0.290 5.290 18 C -0.015 4.015 19 N -0.195 5.195 20 H 0.308 0.692 21 N -0.179 5.179 22 C -0.071 4.071 23 N -0.393 5.393 24 C -0.342 4.342 25 H 0.073 0.927 26 C -0.261 4.261 27 N -0.640 5.640 28 Si 0.776 3.224 29 H -0.199 1.199 30 H -0.182 1.182 31 H -0.233 1.233 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.252 0.748 41 H 0.181 0.819 42 H 0.198 0.802 43 H 0.175 0.825 44 H 0.298 0.702 45 H 0.126 0.874 46 H 0.194 0.806 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.682 12.447 -21.729 26.504 hybrid contribution 1.313 -1.081 1.479 2.253 sum 9.995 11.366 -20.251 25.282 Atomic orbital electron populations 1.22277 0.96969 1.01418 1.00921 1.20551 0.93023 0.95459 0.85243 0.93808 1.22158 0.92190 1.02898 0.98597 1.20980 0.96076 0.80849 0.98597 0.93548 1.22099 1.00294 1.00395 0.98218 1.45714 1.15643 1.11797 1.61608 1.18623 0.82297 0.87934 0.77176 1.90752 1.53085 1.57672 1.45482 1.19838 0.96330 0.93457 1.05800 1.21810 0.98844 0.93322 0.94000 1.21530 0.96353 0.95548 0.99791 1.21669 0.92374 1.00151 0.92630 1.17524 0.90358 0.93034 1.03612 1.22396 0.94769 0.88459 0.96976 1.70460 1.11960 1.19522 1.27076 1.27202 0.92214 0.91666 0.90382 1.48078 1.15802 1.07581 1.48055 0.69180 1.78266 0.97442 1.18374 1.23799 1.21122 0.95543 0.94905 0.95533 1.42848 1.79771 1.09442 1.07232 1.18976 1.33763 0.94143 0.87282 0.92742 1.25425 1.03012 1.02124 0.95526 1.69882 1.55403 1.37419 1.01302 0.85502 0.77540 0.81726 0.77625 1.19861 1.18212 1.23285 0.89963 0.93041 0.95617 0.89453 0.86598 0.90658 0.89534 0.94718 0.74815 0.81860 0.80169 0.82499 0.70152 0.87394 0.80593 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.49 71.98 0.68 -4.04 16 2 C 0.16 5.66 2.84 44.99 0.13 5.79 16 3 H 0.04 1.60 7.56 -2.39 -0.02 1.59 16 4 C -0.12 -2.97 4.29 30.59 0.13 -2.84 16 5 C 0.14 4.20 2.52 44.99 0.11 4.31 16 6 H 0.05 1.94 7.05 -2.39 -0.02 1.92 16 7 C -0.15 -3.68 9.48 71.98 0.68 -3.00 16 8 N -0.70 -19.72 4.40 -445.38 -1.96 -21.68 16 9 C 0.55 20.09 7.74 86.79 0.67 20.76 16 10 O -0.59 -27.84 16.00 -3.89 -0.06 -27.91 16 11 C -0.15 -4.61 5.87 -20.12 -0.12 -4.73 16 12 C -0.06 -1.21 9.54 22.56 0.22 -1.00 16 13 C -0.11 -1.86 10.02 22.20 0.22 -1.64 16 14 C -0.05 -1.00 9.68 22.53 0.22 -0.78 16 15 C -0.04 -1.21 5.87 -20.08 -0.12 -1.33 16 16 C 0.25 7.21 7.77 137.48 1.07 8.28 16 17 N -0.56 -12.43 10.81 -193.08 -2.09 -14.52 16 18 C 0.28 3.62 13.11 180.37 2.37 5.99 16 19 N -0.48 -7.82 7.44 -60.52 -0.45 -8.27 16 20 H 0.46 3.83 8.96 -213.10 -1.91 1.92 16 21 N -0.35 -10.10 12.42 -52.35 -0.65 -10.75 16 22 C -0.05 -1.67 9.22 22.75 0.21 -1.46 16 23 N -0.75 -35.04 4.30 -322.95 -1.39 -36.42 16 24 C -0.21 -12.38 10.41 84.03 0.87 -11.51 16 25 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 26 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 27 N -0.99 -67.11 13.97 21.65 0.30 -66.81 16 28 Si 0.95 49.23 27.74 68.60 1.90 51.13 16 29 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 30 H -0.26 -12.37 6.51 99.48 0.65 -11.72 16 31 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.41 8.10 6.63 -92.71 -0.61 7.49 16 41 H 0.16 2.04 6.39 -2.91 -0.02 2.03 16 42 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.16 2.66 7.82 -2.91 -0.02 2.64 16 44 H 0.28 -0.28 8.06 -2.91 -0.02 -0.30 16 45 H 0.11 4.30 7.42 -2.91 -0.02 4.28 16 46 H 0.36 16.64 5.65 -92.71 -0.52 16.11 16 47 H 0.25 16.53 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -97.54 396.28 1.34 -96.20 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -2.08 Total: 30.15 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 7.81 Total: 8.88 kcal Atomic # 7 Polarization: -152.22 SS G_CDS: -6.23 Total: -158.45 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.90 Total: 51.13 kcal Total: -97.54 1.34 -96.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135167536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.951 kcal (2) G-P(sol) polarization free energy of solvation -97.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds