Wall clock time and date at job start Wed Apr 1 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21549 * 120.00485 * 0.02562 * 9 8 5 11 11 C 1.47863 * 119.99735 * 180.02562 * 9 8 5 12 12 C 1.39613 * 120.11357 * 359.72076 * 11 9 8 13 13 C 1.37982 * 119.98573 * 179.72060 * 12 11 9 14 14 C 1.38257 * 120.21516 * 0.55851 * 13 12 11 15 15 C 1.38913 * 120.23126 * 359.72349 * 14 13 12 16 16 N 1.40220 * 119.99975 * 180.02562 * 15 14 13 17 17 C 1.34727 * 126.83991 * 359.97438 * 16 15 14 18 18 N 1.30845 * 108.03241 * 180.02562 * 17 16 15 19 19 C 1.33258 * 109.84551 * 359.97438 * 18 17 16 20 20 N 1.30749 * 108.99943 * 359.72328 * 19 18 17 21 21 C 1.38594 * 120.00692 * 359.97438 * 15 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 38 38 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08007 * 120.00560 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.88726 * 180.27811 * 13 12 11 42 42 H 1.07997 * 119.88393 * 179.73718 * 14 13 12 43 43 H 1.07997 * 125.97932 * 359.97438 * 17 16 15 44 44 H 1.08003 * 125.50167 * 180.02562 * 19 18 17 45 45 H 1.08006 * 120.10949 * 179.97438 * 21 15 14 46 46 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4324 -0.5727 11 6 5.5476 2.6295 -1.2665 12 6 4.6598 3.5277 -1.8617 13 6 5.0209 4.8497 -2.0230 14 6 6.2649 5.2868 -1.6074 15 6 7.1575 4.3996 -1.0194 16 7 8.4178 4.8483 -0.5992 17 6 8.9035 6.1011 -0.6980 18 7 10.1109 6.1083 -0.1940 19 6 10.4296 4.8874 0.2346 20 7 9.4229 4.0827 0.0142 21 6 6.8022 3.0711 -0.8471 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.6547 -1.0591 -3.4193 37 1 5.1716 -1.3615 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4130 -1.9027 40 1 3.6889 3.1888 -2.1921 41 1 4.3311 5.5441 -2.4796 42 1 6.5436 6.3217 -1.7402 43 1 8.3869 6.9504 -1.1202 44 1 11.3661 4.6088 0.6948 45 1 7.4951 2.3797 -0.3905 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135438254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:38 Heat of formation + Delta-G solvation = 96.393783 kcal Electronic energy + Delta-G solvation = -29514.518271 eV Core-core repulsion = 25506.767148 eV Total energy + Delta-G solvation = -4007.751124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61583 -40.33620 -38.79582 -36.92430 -34.75233 -34.49350 -32.43749 -32.01851 -31.37398 -30.73373 -29.47794 -28.31541 -26.42986 -24.83057 -24.23576 -23.40962 -22.47974 -21.66822 -21.09467 -20.38980 -19.92873 -18.91584 -17.38863 -16.92975 -16.65768 -16.15692 -16.09105 -15.58566 -15.06486 -14.95823 -14.67404 -14.50614 -14.16471 -14.10008 -13.84086 -13.56498 -13.31727 -13.20554 -12.92690 -12.70437 -12.22242 -12.16873 -12.13660 -11.73700 -11.72760 -11.69478 -11.18741 -11.05076 -10.72044 -10.51341 -10.45876 -10.43150 -10.20408 -10.12263 -9.96649 -9.78850 -9.41466 -9.12060 -8.87520 -8.84234 -8.75931 -6.97720 -6.03460 -3.03154 0.24559 0.68024 1.60396 1.82808 2.58200 2.82825 3.20268 3.54568 3.60811 3.65771 3.72936 3.87808 4.06869 4.34920 4.45279 4.54935 4.69780 4.71884 4.77305 4.96675 5.06275 5.12424 5.30017 5.35949 5.44643 5.57352 5.65200 5.69525 5.77816 5.82207 5.85198 5.89970 5.91187 5.99844 6.02042 6.07039 6.17808 6.19328 6.26908 6.34152 6.44306 6.56773 6.63388 6.69954 6.82018 6.98351 7.64318 7.66021 7.85506 8.37802 8.81908 9.28571 10.14663 10.28995 11.45054 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003167 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.278426 B = 8840.397894 C =10329.259003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.556 3.444 10 O -0.521 6.521 11 C -0.100 4.100 12 C -0.089 4.089 13 C -0.099 4.099 14 C -0.114 4.114 15 C 0.139 3.861 16 N -0.328 5.328 17 C 0.258 3.742 18 N -0.538 5.538 19 C 0.204 3.796 20 N -0.305 5.305 21 C -0.053 4.053 22 N -0.731 5.731 23 C -0.326 4.326 24 H 0.061 0.939 25 C -0.043 4.043 26 N -0.943 5.943 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.288 1.288 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.394 0.606 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.223 0.777 44 H 0.224 0.776 45 H 0.153 0.847 46 H 0.365 0.635 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 15.745 -17.533 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.122 0.878 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.342 3.658 10 O -0.397 6.397 11 C -0.103 4.103 12 C -0.108 4.108 13 C -0.118 4.118 14 C -0.135 4.135 15 C 0.046 3.954 16 N -0.112 5.112 17 C -0.037 4.037 18 N -0.264 5.264 19 C -0.098 4.098 20 N -0.130 5.130 21 C -0.074 4.074 22 N -0.374 5.374 23 C -0.458 4.458 24 H 0.079 0.921 25 C -0.241 4.241 26 N -0.589 5.589 27 Si 0.909 3.091 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.214 1.214 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.228 0.772 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.239 0.761 44 H 0.240 0.760 45 H 0.171 0.829 46 H 0.199 0.801 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.798 14.760 -15.289 22.028 hybrid contribution -0.950 0.403 -1.828 2.099 sum 4.848 15.163 -17.117 23.375 Atomic orbital electron populations 1.22444 0.99443 1.00762 0.99875 1.20155 0.91574 0.95495 0.86081 0.93563 1.22204 0.93660 1.02281 0.99007 1.21050 0.95122 0.79851 0.99912 0.87849 1.22190 1.01665 1.00179 0.97946 1.45844 1.16040 1.11808 1.62293 1.18012 0.82405 0.86867 0.78526 1.90830 1.51032 1.55687 1.42166 1.19978 0.94639 0.94562 1.01161 1.21464 0.99121 0.93266 0.96939 1.20907 0.95443 0.95772 0.99633 1.20943 0.93757 0.99176 0.99641 1.17408 0.82552 0.94224 1.01206 1.47748 1.11998 1.07907 1.43575 1.26181 0.91382 0.89008 0.97129 1.70624 1.12916 1.23685 1.19182 1.26226 0.98950 0.86569 0.98034 1.78294 0.97932 1.19044 1.17750 1.21049 0.96194 0.93659 0.96463 1.42399 1.79133 1.09663 1.06242 1.19964 1.41789 0.94875 0.89123 0.92103 1.25654 0.99435 0.97488 1.01487 1.70841 1.51436 1.08210 1.28400 0.83266 0.75807 0.74198 0.75815 1.22395 1.22287 1.21392 0.92823 0.94606 0.93642 0.90609 0.91841 0.92973 0.92387 0.91634 0.77165 0.84703 0.83981 0.84642 0.76101 0.75970 0.82926 0.80116 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.18 3.29 2.84 -67.93 -0.19 3.10 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 5 C 0.14 2.27 2.52 -67.93 -0.17 2.10 16 6 H 0.10 2.16 7.05 -51.93 -0.37 1.80 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.71 -10.02 4.40 -54.74 -0.24 -10.26 16 9 C 0.56 9.25 7.74 -12.32 -0.10 9.16 16 10 O -0.52 -11.14 16.01 5.32 0.09 -11.05 16 11 C -0.10 -1.32 5.87 -104.99 -0.62 -1.94 16 12 C -0.09 -0.81 9.54 -39.16 -0.37 -1.19 16 13 C -0.10 -0.69 10.02 -39.67 -0.40 -1.09 16 14 C -0.11 -0.86 9.47 -39.32 -0.37 -1.24 16 15 C 0.14 1.56 6.69 -83.64 -0.56 1.00 16 16 N -0.33 -3.83 3.82 -11.84 -0.05 -3.88 16 17 C 0.26 2.35 11.98 -90.37 -1.08 1.27 16 18 N -0.54 -5.89 11.19 -15.75 -0.18 -6.07 16 19 C 0.20 2.25 13.03 -91.77 -1.20 1.05 16 20 N -0.31 -4.13 12.05 29.30 0.35 -3.78 16 21 C -0.05 -0.74 9.23 -38.99 -0.36 -1.10 16 22 N -0.73 -17.79 4.49 -53.43 -0.24 -18.03 16 23 C -0.33 -9.18 9.93 -15.06 -0.15 -9.33 16 24 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 25 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 26 N -0.94 -29.77 13.70 55.49 0.76 -29.01 16 27 Si 1.08 27.01 29.92 -169.99 -5.09 21.92 16 28 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.39 4.20 6.63 -40.82 -0.27 3.93 16 40 H 0.14 0.91 6.40 -52.48 -0.34 0.57 16 41 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.14 0.53 6.79 -52.49 -0.36 0.17 16 43 H 0.22 0.88 7.09 -52.49 -0.37 0.50 16 44 H 0.22 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.15 2.53 7.33 -52.48 -0.38 2.14 16 46 H 0.37 9.32 6.63 -40.82 -0.27 9.05 16 47 H 0.26 7.89 6.77 -40.82 -0.28 7.62 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -38.46 395.84 -10.16 -48.61 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.46 Total: 11.48 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -5.07 Total: -5.89 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: 0.41 Total: -71.03 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 27.01 SS G_CDS: -5.09 Total: 21.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.46 -10.16 -48.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135438254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.008 kcal (2) G-P(sol) polarization free energy of solvation -38.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds