Wall clock time and date at job start Wed Apr 1 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21549 * 120.00485 * 0.02562 * 9 8 5 11 11 C 1.47863 * 119.99735 * 180.02562 * 9 8 5 12 12 C 1.39613 * 120.11357 * 359.72076 * 11 9 8 13 13 C 1.37982 * 119.98573 * 179.72060 * 12 11 9 14 14 C 1.38257 * 120.21516 * 0.55851 * 13 12 11 15 15 C 1.38913 * 120.23126 * 359.72349 * 14 13 12 16 16 N 1.40220 * 119.99975 * 180.02562 * 15 14 13 17 17 C 1.34727 * 126.83991 * 359.97438 * 16 15 14 18 18 N 1.30845 * 108.03241 * 180.02562 * 17 16 15 19 19 C 1.33258 * 109.84551 * 359.97438 * 18 17 16 20 20 N 1.30749 * 108.99943 * 359.72328 * 19 18 17 21 21 C 1.38594 * 120.00692 * 359.97438 * 15 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 38 38 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08007 * 120.00560 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.88726 * 180.27811 * 13 12 11 42 42 H 1.07997 * 119.88393 * 179.73718 * 14 13 12 43 43 H 1.07997 * 125.97932 * 359.97438 * 17 16 15 44 44 H 1.08003 * 125.50167 * 180.02562 * 19 18 17 45 45 H 1.08006 * 120.10949 * 179.97438 * 21 15 14 46 46 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4324 -0.5727 11 6 5.5476 2.6295 -1.2665 12 6 4.6598 3.5277 -1.8617 13 6 5.0209 4.8497 -2.0230 14 6 6.2649 5.2868 -1.6074 15 6 7.1575 4.3996 -1.0194 16 7 8.4178 4.8483 -0.5992 17 6 8.9035 6.1011 -0.6980 18 7 10.1109 6.1083 -0.1940 19 6 10.4296 4.8874 0.2346 20 7 9.4229 4.0827 0.0142 21 6 6.8022 3.0711 -0.8471 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.6547 -1.0591 -3.4193 37 1 5.1716 -1.3615 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4130 -1.9027 40 1 3.6889 3.1888 -2.1921 41 1 4.3311 5.5441 -2.4796 42 1 6.5436 6.3217 -1.7402 43 1 8.3869 6.9504 -1.1202 44 1 11.3661 4.6088 0.6948 45 1 7.4951 2.3797 -0.3905 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135438254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:37 Heat of formation + Delta-G solvation = 70.827092 kcal Electronic energy + Delta-G solvation = -29515.626926 eV Core-core repulsion = 25506.767148 eV Total energy + Delta-G solvation = -4008.859779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.39895 -41.42549 -39.78866 -38.41510 -36.34147 -35.38312 -34.19509 -32.95559 -32.36036 -31.75012 -30.39369 -30.12455 -27.68941 -25.75729 -25.50766 -25.06429 -23.36579 -22.59857 -22.15880 -21.50937 -21.37063 -19.87694 -19.43272 -17.89018 -17.56764 -17.16665 -16.97353 -16.73450 -16.38852 -16.12879 -16.10856 -15.68652 -15.46101 -15.19634 -15.06665 -14.79487 -14.66581 -14.50266 -13.98924 -13.58849 -13.48016 -13.42316 -13.17049 -12.94520 -12.89125 -12.82404 -12.56523 -12.54225 -12.20940 -11.96949 -11.92489 -11.88613 -11.59385 -11.25232 -11.20596 -11.09831 -11.06266 -10.93454 -10.30544 -10.03824 -9.55002 -9.06644 -8.36628 -5.27924 -0.49712 -0.17868 0.86642 1.09863 1.49283 1.60932 1.73451 1.74926 1.84892 2.07863 2.68320 2.71760 3.26830 3.32541 3.42368 3.58048 3.69411 3.72456 3.84248 3.89001 3.98064 4.02359 4.04797 4.27422 4.30101 4.43474 4.45022 4.59041 4.70400 4.74132 4.74646 4.84325 4.88618 4.94538 5.02063 5.09339 5.14692 5.17657 5.23908 5.25063 5.28469 5.32884 5.49103 5.54393 5.55408 5.63055 5.93343 6.50390 6.51904 6.88020 7.14208 7.19934 8.04879 8.15688 9.15988 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003167 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.278426 B = 8840.397894 C =10329.259003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.039 0.961 7 C -0.151 4.151 8 N -0.692 5.692 9 C 0.546 3.454 10 O -0.590 6.590 11 C -0.126 4.126 12 C -0.080 4.080 13 C -0.080 4.080 14 C -0.092 4.092 15 C 0.124 3.876 16 N -0.341 5.341 17 C 0.272 3.728 18 N -0.560 5.560 19 C 0.205 3.795 20 N -0.364 5.364 21 C -0.087 4.087 22 N -0.744 5.744 23 C -0.312 4.312 24 H 0.062 0.938 25 C -0.110 4.110 26 N -0.981 5.981 27 Si 1.119 2.881 28 H -0.299 1.299 29 H -0.267 1.267 30 H -0.291 1.291 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.164 0.836 41 H 0.195 0.805 42 H 0.186 0.814 43 H 0.277 0.723 44 H 0.247 0.753 45 H 0.104 0.896 46 H 0.355 0.645 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 20.316 -20.757 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.058 0.942 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.334 3.666 10 O -0.471 6.471 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.098 4.098 14 C -0.112 4.112 15 C 0.032 3.968 16 N -0.125 5.125 17 C -0.022 4.022 18 N -0.287 5.287 19 C -0.097 4.097 20 N -0.190 5.190 21 C -0.109 4.109 22 N -0.387 5.387 23 C -0.444 4.444 24 H 0.080 0.920 25 C -0.301 4.301 26 N -0.630 5.630 27 Si 0.946 3.054 28 H -0.227 1.227 29 H -0.192 1.192 30 H -0.218 1.218 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.182 0.818 41 H 0.212 0.788 42 H 0.203 0.797 43 H 0.292 0.708 44 H 0.263 0.737 45 H 0.122 0.878 46 H 0.187 0.813 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.988 19.387 -18.590 27.026 hybrid contribution -0.111 -0.889 -0.952 1.307 sum 2.877 18.499 -19.542 27.062 Atomic orbital electron populations 1.22287 0.97435 1.00834 1.00912 1.20495 0.92762 0.95225 0.85556 0.93831 1.22114 0.92302 1.02411 0.98818 1.20864 0.95883 0.80912 0.98228 0.94218 1.22090 1.00241 1.00320 0.98307 1.45676 1.15636 1.11648 1.61457 1.18732 0.82292 0.88202 0.77331 1.90788 1.53079 1.57845 1.45393 1.19762 0.95672 0.93225 1.04348 1.21827 0.99137 0.93701 0.95237 1.21537 0.95604 0.95169 0.97510 1.21579 0.92700 1.00577 0.96387 1.17682 0.83262 0.93707 1.02135 1.47817 1.11987 1.08605 1.44089 1.27257 0.90757 0.89090 0.95084 1.70660 1.14174 1.23523 1.20318 1.26780 0.99246 0.86542 0.97113 1.78261 0.99439 1.21337 1.19969 1.20798 0.96388 0.94863 0.98813 1.42641 1.79460 1.09351 1.07212 1.20279 1.38902 0.94893 0.90344 0.92007 1.26938 1.00415 0.97712 1.05076 1.70944 1.54596 1.09503 1.27958 0.82727 0.76208 0.73917 0.72580 1.22735 1.19163 1.21764 0.95369 0.89896 0.94081 0.90503 0.86711 0.89283 0.94756 0.91063 0.74714 0.81824 0.78753 0.79666 0.70806 0.73677 0.87827 0.81330 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.17 6.01 2.84 44.99 0.13 6.13 16 3 H 0.04 1.59 7.56 -2.38 -0.02 1.57 16 4 C -0.12 -3.20 4.29 30.60 0.13 -3.07 16 5 C 0.15 4.65 2.52 45.00 0.11 4.77 16 6 H 0.04 1.80 7.05 -2.39 -0.02 1.79 16 7 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 8 N -0.69 -19.45 4.40 -445.38 -1.96 -21.40 16 9 C 0.55 19.48 7.74 86.79 0.67 20.15 16 10 O -0.59 -28.41 16.01 -3.87 -0.06 -28.47 16 11 C -0.13 -3.45 5.87 -20.10 -0.12 -3.57 16 12 C -0.08 -1.20 9.54 22.54 0.21 -0.98 16 13 C -0.08 -0.65 10.02 22.21 0.22 -0.43 16 14 C -0.09 -0.95 9.47 22.44 0.21 -0.74 16 15 C 0.12 2.71 6.69 38.05 0.25 2.97 16 16 N -0.34 -7.88 3.82 -191.37 -0.73 -8.61 16 17 C 0.27 4.27 11.98 180.26 2.16 6.43 16 18 N -0.56 -11.66 11.19 -203.73 -2.28 -13.94 16 19 C 0.21 4.66 13.03 180.75 2.35 7.02 16 20 N -0.36 -10.60 12.05 -61.21 -0.74 -11.34 16 21 C -0.09 -2.66 9.23 22.65 0.21 -2.45 16 22 N -0.74 -37.21 4.49 -322.94 -1.45 -38.66 16 23 C -0.31 -17.98 9.93 84.03 0.83 -17.14 16 24 H 0.06 3.49 7.83 -2.91 -0.02 3.46 16 25 C -0.11 -6.75 5.50 84.86 0.47 -6.29 16 26 N -0.98 -64.88 13.70 21.65 0.30 -64.59 16 27 Si 1.12 55.88 29.92 68.60 2.05 57.93 16 28 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 30 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.41 7.69 6.63 -92.71 -0.61 7.08 16 40 H 0.16 1.38 6.40 -2.91 -0.02 1.36 16 41 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 42 H 0.19 0.03 6.79 -2.91 -0.02 0.01 16 43 H 0.28 0.64 7.09 -2.91 -0.02 0.62 16 44 H 0.25 3.73 8.06 -2.91 -0.02 3.70 16 45 H 0.10 4.08 7.33 -2.91 -0.02 4.06 16 46 H 0.36 19.06 6.63 -92.71 -0.61 18.45 16 47 H 0.24 16.00 6.77 -92.71 -0.63 15.38 16 Total: -1.00 -97.51 395.84 4.27 -93.24 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.08 Total: 30.55 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 9.22 Total: 5.30 kcal Atomic # 7 Polarization: -151.69 SS G_CDS: -6.86 Total: -158.55 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.06 Total: -28.47 kcal Atomic # 14 Polarization: 55.88 SS G_CDS: 2.05 Total: 57.93 kcal Total: -97.51 4.27 -93.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135438254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.063 kcal (2) G-P(sol) polarization free energy of solvation -97.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds