Wall clock time and date at job start Wed Apr 1 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47098 * 2 1 4 4 C 1.52995 * 109.47320 * 239.99732 * 2 1 3 5 5 C 1.53001 * 109.47290 * 175.00032 * 4 2 1 6 6 H 1.09005 * 109.46940 * 54.99945 * 5 4 2 7 7 C 1.53003 * 109.47128 * 175.00059 * 5 4 2 8 8 N 1.46499 * 109.47170 * 295.00173 * 5 4 2 9 9 C 1.34777 * 120.00438 * 155.00168 * 8 5 4 10 10 O 1.21620 * 119.99287 * 359.97438 * 9 8 5 11 11 C 1.47281 * 120.00423 * 179.97438 * 9 8 5 12 12 C 1.37968 * 126.80364 * 0.02562 * 11 9 8 13 13 N 1.34165 * 107.88400 * 179.97438 * 12 11 9 14 14 H 0.97001 * 125.15970 * 179.97438 * 13 12 11 15 15 N 1.39770 * 109.67071 * 0.24649 * 13 12 11 16 16 C 1.31364 * 109.08205 * 359.57506 * 15 13 12 17 17 C 1.48297 * 126.51010 * 180.18459 * 16 15 13 18 18 C 1.39811 * 120.54225 * 325.25976 * 17 16 15 19 19 C 1.38395 * 118.30863 * 180.02562 * 18 17 16 20 20 C 1.38326 * 119.28897 * 0.02562 * 19 18 17 21 21 N 1.31891 * 121.03667 * 359.97438 * 20 19 18 22 22 C 1.31739 * 121.85451 * 359.70225 * 21 20 19 23 23 N 1.46508 * 109.47096 * 119.99559 * 2 1 3 24 24 C 1.36939 * 120.00106 * 275.00329 * 23 2 1 25 25 H 1.08005 * 119.99519 * 359.97438 * 24 23 2 26 26 C 1.38805 * 119.99967 * 179.97438 * 24 23 2 27 27 N 1.31622 * 120.00073 * 359.97438 * 26 24 23 28 28 Si 1.86802 * 120.00069 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.46812 * 89.99795 * 28 26 24 30 30 H 1.48496 * 109.47168 * 210.00140 * 28 26 24 31 31 H 1.48499 * 109.46986 * 330.00302 * 28 26 24 32 32 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47408 * 300.00089 * 1 2 3 34 34 H 1.08998 * 109.47028 * 60.00273 * 1 2 3 35 35 H 1.08992 * 109.47239 * 54.99760 * 4 2 1 36 36 H 1.09005 * 109.47440 * 294.99788 * 4 2 1 37 37 H 1.09000 * 109.47135 * 299.99627 * 7 5 4 38 38 H 1.08993 * 109.47196 * 59.99773 * 7 5 4 39 39 H 1.09001 * 109.46707 * 180.02562 * 7 5 4 40 40 H 0.97003 * 119.99789 * 334.99382 * 8 5 4 41 41 H 1.07995 * 126.06306 * 359.92891 * 12 11 9 42 42 H 1.08008 * 120.84489 * 359.97438 * 18 17 16 43 43 H 1.08001 * 120.35829 * 180.02562 * 19 18 17 44 44 H 1.07998 * 119.47795 * 179.97438 * 20 19 18 45 45 H 1.08006 * 119.70735 * 180.31607 * 22 21 20 46 46 H 0.97000 * 119.99717 * 95.00071 * 23 2 1 47 47 H 0.96996 * 120.00024 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3866 7 6 4.0852 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1613 1.2136 -1.0867 10 8 5.9378 0.4319 -0.5717 11 6 5.5467 2.6236 -1.2669 12 6 4.7814 3.6242 -1.8297 13 7 5.4998 4.7569 -1.8027 14 1 5.1998 5.6167 -2.1368 15 7 6.7484 4.5086 -1.2257 16 6 6.8191 3.2423 -0.8835 17 6 7.9696 2.5660 -0.2369 18 6 9.2802 2.9421 -0.5461 19 6 10.3191 2.2797 0.0842 20 6 10.0304 1.2757 0.9909 21 7 8.7834 0.9427 1.2625 22 6 7.7620 1.5488 0.6926 23 7 2.0184 -0.6906 1.1963 24 6 2.1491 -0.0074 2.3759 25 1 1.8926 1.0407 2.4241 26 6 2.6113 -0.6618 3.5094 27 7 2.9234 -1.9391 3.4506 28 14 2.7903 0.2703 5.1183 29 1 1.5225 0.1802 5.8862 30 1 3.8944 -0.3235 5.9142 31 1 3.0962 1.6953 4.8334 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.6055 -0.2619 -2.1369 36 1 1.7518 -1.7716 -1.2055 37 1 3.8002 -2.4820 -2.3593 38 1 3.6547 -1.0595 -3.4192 39 1 5.1716 -1.3618 -2.5379 40 1 3.3285 1.4128 -1.9029 41 1 3.7815 3.5149 -2.2229 42 1 9.4769 3.7290 -1.2593 43 1 11.3443 2.5437 -0.1296 44 1 10.8387 0.7565 1.4842 45 1 6.7547 1.2514 0.9444 46 1 2.2491 -1.6317 1.1528 47 1 3.2467 -2.3963 4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135690921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:33 Heat of formation + Delta-G solvation = 81.648692 kcal Electronic energy + Delta-G solvation = -30291.694201 eV Core-core repulsion = 26283.303682 eV Total energy + Delta-G solvation = -4008.390519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33414 -39.67205 -39.12151 -36.71926 -34.43480 -33.40923 -32.20487 -31.84061 -31.29638 -30.13240 -29.43062 -28.52970 -26.28704 -24.16811 -23.71981 -23.52025 -23.12493 -21.17316 -20.35505 -19.86680 -19.67557 -18.54634 -17.16920 -16.94839 -16.37110 -16.01509 -15.70529 -15.52020 -15.04196 -14.68461 -14.30242 -13.96476 -13.93903 -13.81166 -13.60063 -13.56726 -13.00958 -12.88637 -12.75689 -12.62818 -12.10687 -11.97965 -11.81258 -11.69414 -11.57582 -11.14827 -10.95850 -10.77402 -10.55484 -10.45548 -10.37731 -10.17234 -9.84594 -9.67822 -9.55555 -9.48622 -9.25911 -9.01315 -8.81229 -8.60298 -8.45568 -6.85381 -5.65976 -2.93953 0.87405 1.40264 1.44410 2.25073 2.47387 3.48550 3.51016 3.56515 3.58956 3.66341 4.02780 4.13513 4.42387 4.68856 4.76007 4.86942 4.98053 5.06899 5.12923 5.16246 5.31777 5.34331 5.47110 5.53576 5.58635 5.68605 5.74462 5.93222 5.97273 5.99801 6.02308 6.04841 6.17008 6.22901 6.31678 6.34798 6.41173 6.48403 6.60547 6.77333 6.82383 6.87158 6.91174 6.99062 7.10265 7.27623 7.78549 7.87652 8.22673 8.52282 8.64250 9.63860 10.20704 10.54724 11.56681 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.004189 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.439508 B = 6683.260255 C = 8111.366611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.108 0.892 7 C -0.160 4.160 8 N -0.712 5.712 9 C 0.590 3.410 10 O -0.526 6.526 11 C -0.270 4.270 12 C 0.106 3.894 13 N -0.465 5.465 14 H 0.443 0.557 15 N -0.285 5.285 16 C 0.177 3.823 17 C -0.086 4.086 18 C -0.047 4.047 19 C -0.193 4.193 20 C 0.108 3.892 21 N -0.483 5.483 22 C 0.174 3.826 23 N -0.720 5.720 24 C -0.235 4.235 25 H 0.066 0.934 26 C -0.009 4.009 27 N -0.929 5.929 28 Si 0.900 3.100 29 H -0.292 1.292 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.389 0.611 41 H 0.189 0.811 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.181 0.819 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 11.700 -16.790 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.042 3.958 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.362 5.362 9 C 0.377 3.623 10 O -0.404 6.404 11 C -0.285 4.285 12 C -0.044 4.044 13 N -0.170 5.170 14 H 0.288 0.712 15 N -0.106 5.106 16 C 0.008 3.992 17 C -0.090 4.090 18 C -0.074 4.074 19 C -0.213 4.213 20 C -0.049 4.049 21 N -0.192 5.192 22 C 0.016 3.984 23 N -0.361 5.361 24 C -0.367 4.367 25 H 0.084 0.916 26 C -0.205 4.205 27 N -0.577 5.577 28 Si 0.731 3.269 29 H -0.220 1.220 30 H -0.217 1.217 31 H -0.209 1.209 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.222 0.778 41 H 0.205 0.795 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.171 0.829 45 H 0.198 0.802 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.989 11.680 -15.702 20.780 hybrid contribution -0.784 0.995 -0.182 1.279 sum 6.205 12.675 -15.884 21.247 Atomic orbital electron populations 1.22473 0.99716 1.00791 0.99635 1.20205 0.91422 0.95513 0.86624 0.93710 1.22169 0.93826 1.02238 0.98707 1.21031 0.94941 0.79849 0.99984 0.87373 1.22180 1.01608 1.00158 0.97928 1.45783 1.15944 1.11635 1.62811 1.17052 0.81903 0.85573 0.77738 1.90781 1.50768 1.55664 1.43147 1.21437 0.96039 0.95466 1.15527 1.23014 0.97718 0.86161 0.97513 1.45894 1.11619 1.10719 1.48795 0.71249 1.77310 0.99390 1.15902 1.17978 1.21570 0.92687 0.89664 0.95262 1.18708 0.90389 0.99354 1.00582 1.21550 0.91324 0.97348 0.97200 1.21969 0.99873 0.99393 1.00086 1.22969 0.94511 0.93626 0.93777 1.67919 0.99456 1.26802 1.24993 1.23648 0.99605 0.87047 0.88103 1.42385 1.77956 1.10564 1.05219 1.19109 1.36646 0.93580 0.87324 0.91637 1.24661 1.02104 0.95889 0.97827 1.69634 1.50765 1.08568 1.28750 0.86303 0.77170 0.78933 0.84468 1.21980 1.21697 1.20945 0.93547 0.92970 0.94846 0.92213 0.90631 0.91797 0.93328 0.92449 0.77785 0.79456 0.84962 0.84852 0.82898 0.80236 0.78315 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.04 0.82 7.56 -51.93 -0.39 0.43 16 4 C -0.13 -1.89 4.29 -26.73 -0.11 -2.00 16 5 C 0.15 2.26 2.52 -67.93 -0.17 2.08 16 6 H 0.11 2.24 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.79 16 8 N -0.71 -9.70 4.44 -54.92 -0.24 -9.95 16 9 C 0.59 9.52 7.65 -12.58 -0.10 9.43 16 10 O -0.53 -10.56 12.14 5.26 0.06 -10.49 16 11 C -0.27 -3.68 6.27 -102.95 -0.65 -4.33 16 12 C 0.11 0.95 11.50 -16.63 -0.19 0.76 16 13 N -0.46 -4.08 7.20 30.81 0.22 -3.86 16 14 H 0.44 2.10 8.96 -182.85 -1.64 0.46 16 15 N -0.28 -3.65 12.64 34.57 0.44 -3.22 16 16 C 0.18 2.61 6.96 -80.56 -0.56 2.05 16 17 C -0.09 -1.34 5.74 -104.76 -0.60 -1.95 16 18 C -0.05 -0.61 9.92 -38.94 -0.39 -0.99 16 19 C -0.19 -2.24 10.10 -39.49 -0.40 -2.64 16 20 C 0.11 1.47 11.17 -17.49 -0.20 1.28 16 21 N -0.48 -8.62 10.35 -12.96 -0.13 -8.75 16 22 C 0.17 3.16 8.96 -17.18 -0.15 3.01 16 23 N -0.72 -17.32 4.49 -53.42 -0.24 -17.56 16 24 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 25 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 26 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 27 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 28 Si 0.90 23.15 29.55 -169.99 -5.02 18.12 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 31 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.39 3.92 7.56 -40.82 -0.31 3.61 16 41 H 0.19 0.84 7.48 -52.49 -0.39 0.45 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.18 3.72 5.69 -52.48 -0.30 3.42 16 46 H 0.38 9.96 7.80 -40.82 -0.32 9.65 16 47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -36.41 395.06 -9.40 -45.82 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.91 Total: 13.21 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.25 Total: -1.57 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: 0.77 Total: -71.04 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.06 Total: -10.49 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.41 -9.40 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135690921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.465 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds