Wall clock time and date at job start Wed Apr 1 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46823 * 2 1 4 4 C 1.52992 * 109.47273 * 240.00271 * 2 1 3 5 5 C 1.52998 * 109.47243 * 175.00040 * 4 2 1 6 6 H 1.09007 * 109.47117 * 54.99401 * 5 4 2 7 7 C 1.53005 * 109.47366 * 174.99577 * 5 4 2 8 8 N 1.46502 * 109.47128 * 295.00034 * 5 4 2 9 9 C 1.34778 * 119.99984 * 154.99926 * 8 5 4 10 10 O 1.21513 * 120.00025 * 0.02562 * 9 8 5 11 11 C 1.48182 * 119.99498 * 179.97438 * 9 8 5 12 12 C 1.39122 * 119.68809 * 179.97438 * 11 9 8 13 13 C 1.39281 * 118.97329 * 180.02562 * 12 11 9 14 14 N 1.39968 * 120.81781 * 180.02562 * 13 12 11 15 15 C 1.37155 * 126.48007 * 180.02562 * 14 13 12 16 16 C 1.34623 * 106.83094 * 180.02562 * 15 14 13 17 17 N 1.34145 * 108.21003 * 359.97438 * 16 15 14 18 18 C 1.30482 * 109.36838 * 0.02562 * 17 16 15 19 19 C 1.39260 * 118.36040 * 0.27560 * 13 12 11 20 20 C 1.38349 * 119.27651 * 359.43956 * 19 13 12 21 21 N 1.31599 * 120.97328 * 0.57391 * 20 19 13 22 22 N 1.46496 * 109.47049 * 119.99651 * 2 1 3 23 23 C 1.36935 * 120.00339 * 275.00420 * 22 2 1 24 24 H 1.07997 * 120.00068 * 0.02562 * 23 22 2 25 25 C 1.38810 * 119.99900 * 179.97438 * 23 22 2 26 26 N 1.31614 * 120.00207 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99868 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46849 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47448 * 120.00360 * 27 25 23 30 30 H 1.48503 * 109.47009 * 240.00475 * 27 25 23 31 31 H 1.09000 * 109.47172 * 300.00123 * 1 2 3 32 32 H 1.09001 * 109.46739 * 60.00127 * 1 2 3 33 33 H 1.08992 * 109.47286 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47597 * 54.99936 * 4 2 1 35 35 H 1.09007 * 109.47001 * 294.99563 * 4 2 1 36 36 H 1.08996 * 109.47169 * 299.99853 * 7 5 4 37 37 H 1.08993 * 109.46929 * 59.99950 * 7 5 4 38 38 H 1.08998 * 109.46853 * 179.97438 * 7 5 4 39 39 H 0.96998 * 119.99280 * 334.99589 * 8 5 4 40 40 H 1.08004 * 120.51967 * 0.02650 * 12 11 9 41 41 H 1.08001 * 126.58161 * 359.76339 * 15 14 13 42 42 H 1.08005 * 125.89638 * 179.97438 * 16 15 14 43 43 H 1.08004 * 125.72604 * 179.97438 * 18 17 16 44 44 H 1.07996 * 120.36404 * 179.72387 * 19 13 12 45 45 H 1.07996 * 119.51458 * 180.31987 * 20 19 13 46 46 H 0.97000 * 119.99615 * 95.00287 * 22 2 1 47 47 H 0.97008 * 119.99918 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9954 -0.9921 -0.3867 7 6 4.0853 -1.4382 -2.4924 8 7 3.9480 0.7895 -1.4923 9 6 5.1612 1.2136 -1.0865 10 8 5.9375 0.4325 -0.5729 11 6 5.5489 2.6323 -1.2678 12 6 6.8026 3.0634 -0.8461 13 6 7.1513 4.4001 -1.0233 14 7 8.4026 4.8751 -0.6138 15 6 8.8648 6.1612 -0.7307 16 6 10.1080 6.1770 -0.2144 17 7 10.4023 4.9383 0.2080 18 6 9.3896 4.1494 -0.0256 19 6 6.2222 5.2535 -1.6130 20 6 4.9973 4.7487 -2.0116 21 7 4.6964 3.4803 -1.8310 22 7 2.0183 -0.6905 1.1962 23 6 2.1490 -0.0074 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6112 -0.6619 3.5093 26 7 2.9243 -1.9389 3.4502 27 14 2.7889 0.2698 5.1186 28 1 2.3751 1.6822 4.9211 29 1 1.9278 -0.3589 6.1523 30 1 4.2056 0.2269 5.5616 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6055 -0.2617 -2.1369 35 1 1.7517 -1.7715 -1.2055 36 1 3.8003 -2.4818 -2.3594 37 1 3.6547 -1.0593 -3.4192 38 1 5.1715 -1.3609 -2.5385 39 1 3.3284 1.4129 -1.9027 40 1 7.4949 2.3722 -0.3884 41 1 8.3348 6.9992 -1.1588 42 1 10.7565 7.0384 -0.1513 43 1 9.3434 3.0962 0.2091 44 1 6.4570 6.2971 -1.7619 45 1 4.2760 5.4059 -2.4741 46 1 2.2490 -1.6317 1.1526 47 1 3.2470 -2.3964 4.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:44 Heat of formation + Delta-G solvation = 77.868813 kcal Electronic energy + Delta-G solvation = -29514.923650 eV Core-core repulsion = 25506.369223 eV Total energy + Delta-G solvation = -4008.554427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75135 -40.73821 -39.13824 -36.84545 -35.28294 -34.47832 -32.31585 -31.96256 -31.09233 -30.32925 -29.78814 -28.57577 -26.33149 -25.19503 -24.54586 -23.59577 -22.41762 -21.38732 -21.03610 -20.40163 -19.69311 -19.17919 -17.39853 -17.04704 -16.56792 -16.34370 -16.00915 -15.69905 -15.08941 -14.97181 -14.74819 -14.56640 -14.24511 -14.06183 -13.94844 -13.81839 -13.68821 -13.48000 -12.96935 -12.71272 -12.37936 -12.15209 -11.99611 -11.72388 -11.62003 -11.59007 -11.05184 -10.83039 -10.63370 -10.57706 -10.43045 -10.29438 -10.18636 -9.86891 -9.76865 -9.68315 -9.60062 -9.45728 -8.94030 -8.86384 -8.74995 -6.89722 -5.71265 -2.98896 0.14988 0.43327 1.83313 2.10005 2.69973 2.79107 3.15223 3.46059 3.51272 3.53677 3.64273 3.87079 4.10436 4.14904 4.27981 4.44185 4.56315 4.63832 4.89235 4.98796 5.04680 5.12183 5.17058 5.30010 5.32385 5.40534 5.51007 5.63321 5.69593 5.85088 5.89683 5.94307 5.96524 6.03838 6.15252 6.27737 6.31020 6.34851 6.44817 6.58134 6.68614 6.72944 6.79897 6.92930 7.09901 7.30114 7.58266 7.75005 7.75980 8.37074 8.47347 9.58751 10.16221 10.50573 11.51538 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.003179 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.433149 B = 8804.803197 C =10305.339207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.141 3.859 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.690 5.690 9 C 0.568 3.432 10 O -0.521 6.521 11 C 0.124 3.876 12 C -0.132 4.132 13 C 0.176 3.824 14 N -0.416 5.416 15 C -0.055 4.055 16 C -0.018 4.018 17 N -0.482 5.482 18 C 0.201 3.799 19 C -0.174 4.174 20 C 0.129 3.871 21 N -0.462 5.462 22 N -0.720 5.720 23 C -0.233 4.233 24 H 0.067 0.933 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.900 3.100 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.406 0.594 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.214 0.786 44 H 0.147 0.853 45 H 0.174 0.826 46 H 0.383 0.617 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 15.078 -16.991 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.037 3.963 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.340 5.340 9 C 0.351 3.649 10 O -0.396 6.396 11 C -0.015 4.015 12 C -0.154 4.154 13 C 0.074 3.926 14 N -0.096 5.096 15 C -0.184 4.184 16 C -0.163 4.163 17 N -0.198 5.198 18 C -0.080 4.080 19 C -0.196 4.196 20 C -0.030 4.030 21 N -0.174 5.174 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.085 0.915 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.732 3.268 28 H -0.208 1.208 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.241 0.759 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.194 0.806 43 H 0.231 0.769 44 H 0.164 0.836 45 H 0.191 0.809 46 H 0.217 0.783 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.330 14.030 -16.382 22.478 hybrid contribution -0.128 1.223 0.746 1.438 sum 6.201 15.253 -15.636 22.707 Atomic orbital electron populations 1.22448 0.99493 1.00781 0.99786 1.20232 0.91616 0.95600 0.86493 0.93553 1.22170 0.93466 1.02325 0.98978 1.21146 0.95435 0.79592 1.00079 0.87412 1.22184 1.01503 1.00269 0.97977 1.45794 1.15732 1.11944 1.60574 1.17622 0.83008 0.85223 0.79018 1.90834 1.51400 1.54470 1.42887 1.21244 0.90036 0.94955 0.95287 1.21808 0.98580 0.93956 1.01078 1.17949 0.84581 0.93378 0.96651 1.43226 1.11574 1.09736 1.45029 1.22806 0.98342 0.87143 1.10071 1.22438 0.95042 0.96086 1.02783 1.70388 1.26046 1.02340 1.21056 1.25559 0.83438 0.99965 0.99019 1.22062 0.94830 1.01081 1.01659 1.22741 0.94107 0.91362 0.94802 1.67645 1.33424 1.03986 1.12366 1.42402 1.77984 1.10552 1.05278 1.19191 1.36219 0.93660 0.87335 0.91532 1.24679 1.02291 0.95927 0.97875 1.69652 1.51073 1.08574 1.28625 0.86215 0.77343 0.78767 0.84464 1.20775 1.21926 1.21919 0.92941 0.94674 0.93532 0.91888 0.90440 0.91496 0.93003 0.92508 0.75891 0.82437 0.80235 0.80574 0.76913 0.83565 0.80946 0.78345 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.17 3.22 2.84 -67.93 -0.19 3.03 16 3 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -1.97 4.29 -26.74 -0.11 -2.08 16 5 C 0.14 2.25 2.52 -67.93 -0.17 2.07 16 6 H 0.11 2.23 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.15 9.49 37.16 0.35 -1.79 16 8 N -0.69 -10.31 4.44 -54.64 -0.24 -10.55 16 9 C 0.57 9.36 7.78 -12.17 -0.09 9.27 16 10 O -0.52 -10.37 15.98 5.35 0.09 -10.28 16 11 C 0.12 1.67 6.75 -83.05 -0.56 1.11 16 12 C -0.13 -1.59 9.06 -38.87 -0.35 -1.95 16 13 C 0.18 1.78 6.67 -83.37 -0.56 1.22 16 14 N -0.42 -4.18 2.99 -61.91 -0.18 -4.37 16 15 C -0.05 -0.45 10.89 -16.45 -0.18 -0.63 16 16 C -0.02 -0.17 11.85 -17.82 -0.21 -0.38 16 17 N -0.48 -5.89 11.24 -14.47 -0.16 -6.05 16 18 C 0.20 2.22 11.95 -89.60 -1.07 1.15 16 19 C -0.17 -1.34 9.55 -39.16 -0.37 -1.71 16 20 C 0.13 1.05 11.17 -17.61 -0.20 0.85 16 21 N -0.46 -5.27 9.54 -9.86 -0.09 -5.36 16 22 N -0.72 -17.55 4.49 -53.43 -0.24 -17.79 16 23 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 24 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 25 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 27 Si 0.90 22.98 29.55 -169.99 -5.02 17.95 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.41 5.24 7.93 -40.82 -0.32 4.92 16 40 H 0.16 1.89 6.49 -52.48 -0.34 1.55 16 41 H 0.18 0.83 7.23 -52.49 -0.38 0.45 16 42 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.21 1.90 7.15 -52.48 -0.38 1.53 16 44 H 0.15 0.66 6.94 -52.49 -0.36 0.29 16 45 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -35.34 397.86 -9.39 -44.73 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.63 Total: 12.78 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.61 Total: 0.59 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -0.20 Total: -71.76 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.34 -9.39 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.595 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds