Wall clock time and date at job start Wed Apr 1 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08998 * 109.47038 * 305.00130 * 5 4 2 7 7 C 1.53008 * 109.46949 * 185.00342 * 5 4 2 8 8 N 1.46501 * 109.46895 * 65.00576 * 5 4 2 9 9 C 1.36940 * 119.99699 * 204.99678 * 8 5 4 10 10 H 1.08003 * 120.00062 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00140 * 179.97438 * 9 8 5 12 12 N 1.31620 * 119.99491 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47453 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.47216 * 120.00069 * 13 11 9 16 16 H 1.48500 * 109.47514 * 240.00124 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21540 * 120.00160 * 0.02562 * 18 17 2 20 20 C 1.47977 * 120.00076 * 180.02562 * 18 17 2 21 21 C 1.39443 * 119.65446 * 179.73109 * 20 18 17 22 22 C 1.38344 * 119.14195 * 179.71126 * 21 20 18 23 23 C 1.39292 * 118.43093 * 0.54910 * 22 21 20 24 24 N 1.39880 * 120.38596 * 179.75213 * 23 22 21 25 25 C 1.37156 * 126.48047 * 179.97438 * 24 23 22 26 26 C 1.34621 * 106.83005 * 179.97438 * 25 24 23 27 27 N 1.34153 * 108.21277 * 0.02562 * 26 25 24 28 28 C 1.30488 * 109.36487 * 359.75750 * 27 26 25 29 29 C 1.39269 * 119.22491 * 359.73186 * 23 22 21 30 30 N 1.31391 * 120.79577 * 359.97438 * 29 23 22 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 34 34 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 35 35 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 36 36 H 1.08997 * 109.46840 * 300.00259 * 7 5 4 37 37 H 1.09001 * 109.46854 * 59.99669 * 7 5 4 38 38 H 1.08994 * 109.46921 * 180.02562 * 7 5 4 39 39 H 0.96996 * 120.00242 * 24.99305 * 8 5 4 40 40 H 0.97003 * 119.99576 * 180.02562 * 12 11 9 41 41 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 42 42 H 1.08005 * 120.43113 * 359.97438 * 21 20 18 43 43 H 1.07995 * 120.78612 * 180.27808 * 22 21 20 44 44 H 1.07998 * 126.58681 * 359.93658 * 25 24 23 45 45 H 1.07999 * 125.89354 * 179.97438 * 26 25 24 46 46 H 1.08003 * 125.71864 * 180.23076 * 28 27 26 47 47 H 1.07994 * 119.60321 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3944 -0.9857 0.2808 10 1 5.9386 -0.1790 -0.1877 11 6 5.9521 -1.6683 1.3531 12 7 5.2885 -2.6511 1.9243 13 14 7.6447 -1.1933 1.9843 14 1 8.1760 -0.0663 1.1763 15 1 7.5441 -0.7778 3.4065 16 1 8.5596 -2.3576 1.8723 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8575 1.1609 2.4118 20 6 2.6407 -0.7156 3.5653 21 6 2.7764 -0.0116 4.7613 22 6 3.2332 -0.6755 5.8857 23 6 3.5522 -2.0268 5.7742 24 7 4.0226 -2.7367 6.8839 25 6 4.3717 -4.0627 6.9156 26 6 4.7679 -4.3316 8.1738 27 7 4.6653 -3.2053 8.8953 28 6 4.2247 -2.2419 8.1334 29 6 3.3970 -2.6629 4.5450 30 7 2.9549 -2.0041 3.4977 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.7517 -1.7715 -1.2055 35 1 1.6055 -0.2618 -2.1369 36 1 3.7724 -2.2741 -2.6698 37 1 3.6265 -0.6887 -3.4656 38 1 5.1509 -1.1485 -2.6696 39 1 3.6647 -2.0585 0.2388 40 1 5.6781 -3.1279 2.6739 41 1 2.2490 -1.6318 1.1527 42 1 2.5241 1.0374 4.8102 43 1 3.3440 -0.1573 6.8267 44 1 4.3352 -4.7579 6.0899 45 1 5.1086 -5.2889 8.5394 46 1 4.0482 -1.2227 8.4442 47 1 3.6421 -3.7106 4.4518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135916607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:01 Heat of formation + Delta-G solvation = 87.971896 kcal Electronic energy + Delta-G solvation = -30787.398248 eV Core-core repulsion = 26779.281924 eV Total energy + Delta-G solvation = -4008.116324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34229 -40.17928 -38.78403 -36.79099 -34.50519 -34.21715 -32.40569 -32.00391 -30.86542 -29.70212 -29.26520 -28.49118 -26.35924 -24.76175 -23.79828 -23.65808 -21.97227 -20.85591 -20.85024 -20.23342 -19.74380 -18.58343 -17.52758 -17.18571 -16.40523 -15.60207 -15.55782 -14.88573 -14.83326 -14.69935 -14.55687 -14.16708 -13.85266 -13.77524 -13.69555 -13.45972 -13.25248 -12.93753 -12.84169 -12.64870 -12.39808 -12.15423 -11.90335 -11.75697 -11.67769 -11.06224 -10.90994 -10.88323 -10.74937 -10.40177 -10.25646 -10.24517 -9.92049 -9.77526 -9.67323 -9.62905 -9.12529 -8.97344 -8.76423 -8.46431 -8.24093 -6.92553 -5.76970 -3.01879 0.55207 1.37951 2.17307 2.60539 3.05569 3.25074 3.36630 3.44436 3.46329 3.65180 4.25242 4.50734 4.52167 4.55744 4.63517 4.68294 4.87289 5.00932 5.10131 5.35724 5.36773 5.41620 5.50247 5.55259 5.55377 5.66484 5.73916 5.86028 5.87089 5.93212 5.98877 6.05425 6.13865 6.23010 6.25880 6.33539 6.39607 6.52252 6.55056 6.59772 6.64788 6.84323 7.03653 7.12351 7.16374 7.69785 7.90940 7.97188 8.26813 8.37815 8.79547 9.50369 10.05648 10.41490 11.40865 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.004119 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.131849 B = 6796.118200 C = 8298.593366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.228 4.228 10 H 0.065 0.935 11 C -0.006 4.006 12 N -0.903 5.903 13 Si 0.889 3.111 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.294 1.294 17 N -0.673 5.673 18 C 0.582 3.418 19 O -0.559 6.559 20 C 0.084 3.916 21 C -0.097 4.097 22 C -0.106 4.106 23 C 0.080 3.920 24 N -0.401 5.401 25 C -0.045 4.045 26 C -0.029 4.029 27 N -0.488 5.488 28 C 0.184 3.816 29 C 0.118 3.882 30 N -0.367 5.367 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.381 0.619 40 H 0.247 0.753 41 H 0.416 0.584 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.182 0.818 45 H 0.174 0.826 46 H 0.207 0.793 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -0.377 3.667 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.058 3.942 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.359 4.359 10 H 0.083 0.917 11 C -0.203 4.203 12 N -0.551 5.551 13 Si 0.721 3.279 14 H -0.208 1.208 15 H -0.225 1.225 16 H -0.221 1.221 17 N -0.325 5.325 18 C 0.367 3.633 19 O -0.438 6.438 20 C -0.055 4.055 21 C -0.119 4.119 22 C -0.133 4.133 23 C -0.016 4.016 24 N -0.080 5.080 25 C -0.175 4.175 26 C -0.175 4.175 27 N -0.205 5.205 28 C -0.097 4.097 29 C -0.045 4.045 30 N -0.077 5.077 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.216 0.784 40 H 0.057 0.943 41 H 0.256 0.744 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.199 0.801 45 H 0.191 0.809 46 H 0.223 0.777 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.894 0.191 3.631 9.608 hybrid contribution 1.349 -0.133 0.441 1.425 sum -7.545 0.059 4.072 8.574 Atomic orbital electron populations 1.22207 0.96105 1.01755 1.01999 1.20880 0.92622 0.97756 0.84509 0.89789 1.22215 0.97868 1.00686 0.96464 1.20288 0.89668 0.95873 0.88324 0.93524 1.22418 1.01498 1.00354 0.98057 1.42482 1.18657 1.40054 1.34593 1.19159 0.93214 1.13012 1.10546 0.91726 1.24558 0.97706 0.98981 0.99068 1.69711 1.36569 1.23830 1.25004 0.86393 0.85553 0.77542 0.78400 1.20835 1.22477 1.22093 1.45837 1.63630 1.15076 1.07940 1.17563 0.77218 0.85653 0.82867 1.90708 1.52514 1.15285 1.85297 1.21275 0.99219 0.91017 0.94019 1.21908 0.96882 1.01660 0.91405 1.21083 1.00414 0.91743 1.00067 1.19177 1.01447 0.92819 0.88112 1.43068 1.46838 1.09267 1.08790 1.22904 1.07983 0.85183 1.01458 1.22327 1.06494 0.98155 0.90491 1.70299 1.18156 0.99612 1.32446 1.25235 1.03772 1.00711 0.79989 1.22504 0.96368 1.00512 0.85068 1.67741 1.05093 1.07420 1.27421 0.92013 0.92708 0.92382 0.91645 0.90733 0.93603 0.94629 0.92915 0.78351 0.94319 0.74442 0.83179 0.84128 0.80118 0.80889 0.77682 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 2 C 0.15 2.29 2.57 -67.93 -0.17 2.11 16 3 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 5 C 0.17 3.05 2.89 -67.92 -0.20 2.85 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 8 N -0.71 -15.70 3.84 -53.42 -0.21 -15.90 16 9 C -0.23 -5.81 9.93 -15.06 -0.15 -5.96 16 10 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 11 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 12 N -0.90 -22.93 11.95 55.49 0.66 -22.27 16 13 Si 0.89 21.79 29.55 -169.99 -5.02 16.76 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 N -0.67 -11.95 3.79 -54.71 -0.21 -12.16 16 18 C 0.58 11.26 7.77 -12.27 -0.10 11.17 16 19 O -0.56 -11.64 15.98 5.33 0.09 -11.55 16 20 C 0.08 1.54 6.75 -83.01 -0.56 0.98 16 21 C -0.10 -1.52 9.62 -39.09 -0.38 -1.90 16 22 C -0.11 -1.44 9.57 -39.15 -0.37 -1.81 16 23 C 0.08 1.18 6.66 -83.41 -0.56 0.63 16 24 N -0.40 -5.49 2.98 -61.93 -0.18 -5.68 16 25 C -0.04 -0.57 10.86 -16.45 -0.18 -0.75 16 26 C -0.03 -0.37 11.85 -17.82 -0.21 -0.58 16 27 N -0.49 -7.04 11.24 -14.47 -0.16 -7.20 16 28 C 0.18 2.39 11.93 -89.60 -1.07 1.32 16 29 C 0.12 1.92 10.56 -17.36 -0.18 1.74 16 30 N -0.37 -6.70 8.50 -9.66 -0.08 -6.78 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.38 8.63 5.70 -40.82 -0.23 8.40 16 40 H 0.25 6.27 8.31 -40.82 -0.34 5.93 16 41 H 0.42 7.71 5.83 -40.82 -0.24 7.48 16 42 H 0.15 2.16 7.63 -52.48 -0.40 1.76 16 43 H 0.14 1.41 6.88 -52.49 -0.36 1.05 16 44 H 0.18 1.88 7.16 -52.49 -0.38 1.51 16 45 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 46 H 0.21 1.93 7.12 -52.48 -0.37 1.56 16 47 H 0.16 2.38 6.82 -52.49 -0.36 2.02 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -30.10 391.16 -9.36 -39.46 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -6.50 Total: 16.08 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.63 Total: 3.35 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.18 Total: -69.99 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.10 -9.36 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135916607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.428 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds