Wall clock time and date at job start Wed Apr 1 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08998 * 109.47038 * 305.00130 * 5 4 2 7 7 C 1.53008 * 109.46949 * 185.00342 * 5 4 2 8 8 N 1.46501 * 109.46895 * 65.00576 * 5 4 2 9 9 C 1.36940 * 119.99699 * 204.99678 * 8 5 4 10 10 H 1.08003 * 120.00062 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00140 * 179.97438 * 9 8 5 12 12 N 1.31620 * 119.99491 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00156 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47453 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.47216 * 120.00069 * 13 11 9 16 16 H 1.48500 * 109.47514 * 240.00124 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21540 * 120.00160 * 0.02562 * 18 17 2 20 20 C 1.47977 * 120.00076 * 180.02562 * 18 17 2 21 21 C 1.39443 * 119.65446 * 179.73109 * 20 18 17 22 22 C 1.38344 * 119.14195 * 179.71126 * 21 20 18 23 23 C 1.39292 * 118.43093 * 0.54910 * 22 21 20 24 24 N 1.39880 * 120.38596 * 179.75213 * 23 22 21 25 25 C 1.37156 * 126.48047 * 179.97438 * 24 23 22 26 26 C 1.34621 * 106.83005 * 179.97438 * 25 24 23 27 27 N 1.34153 * 108.21277 * 0.02562 * 26 25 24 28 28 C 1.30488 * 109.36487 * 359.75750 * 27 26 25 29 29 C 1.39269 * 119.22491 * 359.73186 * 23 22 21 30 30 N 1.31391 * 120.79577 * 359.97438 * 29 23 22 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 34 34 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 35 35 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 36 36 H 1.08997 * 109.46840 * 300.00259 * 7 5 4 37 37 H 1.09001 * 109.46854 * 59.99669 * 7 5 4 38 38 H 1.08994 * 109.46921 * 180.02562 * 7 5 4 39 39 H 0.96996 * 120.00242 * 24.99305 * 8 5 4 40 40 H 0.97003 * 119.99576 * 180.02562 * 12 11 9 41 41 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 42 42 H 1.08005 * 120.43113 * 359.97438 * 21 20 18 43 43 H 1.07995 * 120.78612 * 180.27808 * 22 21 20 44 44 H 1.07998 * 126.58681 * 359.93658 * 25 24 23 45 45 H 1.07999 * 125.89354 * 179.97438 * 26 25 24 46 46 H 1.08003 * 125.71864 * 180.23076 * 28 27 26 47 47 H 1.07994 * 119.60321 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0647 -1.2251 -2.6240 8 7 4.1537 -1.3343 -0.1823 9 6 5.3944 -0.9857 0.2808 10 1 5.9386 -0.1790 -0.1877 11 6 5.9521 -1.6683 1.3531 12 7 5.2885 -2.6511 1.9243 13 14 7.6447 -1.1933 1.9843 14 1 8.1760 -0.0663 1.1763 15 1 7.5441 -0.7778 3.4065 16 1 8.5596 -2.3576 1.8723 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8575 1.1609 2.4118 20 6 2.6407 -0.7156 3.5653 21 6 2.7764 -0.0116 4.7613 22 6 3.2332 -0.6755 5.8857 23 6 3.5522 -2.0268 5.7742 24 7 4.0226 -2.7367 6.8839 25 6 4.3717 -4.0627 6.9156 26 6 4.7679 -4.3316 8.1738 27 7 4.6653 -3.2053 8.8953 28 6 4.2247 -2.2419 8.1334 29 6 3.3970 -2.6629 4.5450 30 7 2.9549 -2.0041 3.4977 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.7517 -1.7715 -1.2055 35 1 1.6055 -0.2618 -2.1369 36 1 3.7724 -2.2741 -2.6698 37 1 3.6265 -0.6887 -3.4656 38 1 5.1509 -1.1485 -2.6696 39 1 3.6647 -2.0585 0.2388 40 1 5.6781 -3.1279 2.6739 41 1 2.2490 -1.6318 1.1527 42 1 2.5241 1.0374 4.8102 43 1 3.3440 -0.1573 6.8267 44 1 4.3352 -4.7579 6.0899 45 1 5.1086 -5.2889 8.5394 46 1 4.0482 -1.2227 8.4442 47 1 3.6421 -3.7106 4.4518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135916607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:00 Heat of formation + Delta-G solvation = 71.837688 kcal Electronic energy + Delta-G solvation = -30788.097880 eV Core-core repulsion = 26779.281924 eV Total energy + Delta-G solvation = -4008.815956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37167 -41.46478 -40.10720 -38.24877 -35.76351 -35.65342 -33.99442 -33.29134 -32.24818 -30.83893 -30.42772 -30.02958 -27.57944 -25.97554 -25.50166 -24.95954 -23.16268 -22.00196 -21.91916 -21.62988 -21.11737 -19.65486 -19.03884 -18.82926 -17.70998 -16.93928 -16.66122 -16.52075 -16.11222 -15.99827 -15.75914 -15.51365 -15.35506 -15.24335 -14.77325 -14.66737 -14.49090 -14.23939 -14.06075 -13.97229 -13.61567 -13.50461 -13.29663 -13.17197 -12.93262 -12.79482 -12.60472 -12.28717 -12.12707 -12.04916 -11.70643 -11.55832 -11.38411 -11.29496 -11.15379 -10.87579 -10.78830 -10.40729 -9.91658 -9.74409 -9.40351 -8.72889 -7.73564 -4.96225 -0.64662 0.20502 1.08815 1.36910 1.43810 1.46396 1.54724 1.89800 2.07858 2.35411 2.59340 2.95085 3.29496 3.49011 3.50650 3.55057 3.66783 3.81546 3.86847 3.91995 4.08766 4.19805 4.20698 4.41124 4.42816 4.51698 4.59235 4.67196 4.71481 4.75135 4.84254 4.87041 4.89770 4.95496 5.10514 5.15991 5.18245 5.20377 5.34998 5.38837 5.44532 5.64513 5.66448 5.67179 5.77805 6.12607 6.43254 6.61800 6.91172 6.93486 7.36551 7.53416 8.26341 8.54226 9.42512 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.004119 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.131849 B = 6796.118200 C = 8298.593366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.061 0.939 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.028 0.972 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.234 4.234 10 H 0.048 0.952 11 C -0.038 4.038 12 N -0.903 5.903 13 Si 0.924 3.076 14 H -0.287 1.287 15 H -0.309 1.309 16 H -0.298 1.298 17 N -0.670 5.670 18 C 0.572 3.428 19 O -0.584 6.584 20 C 0.054 3.946 21 C -0.099 4.099 22 C -0.096 4.096 23 C 0.092 3.908 24 N -0.409 5.409 25 C -0.056 4.056 26 C -0.036 4.036 27 N -0.515 5.515 28 C 0.184 3.816 29 C 0.102 3.898 30 N -0.387 5.387 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.377 0.623 40 H 0.242 0.758 41 H 0.412 0.588 42 H 0.160 0.840 43 H 0.182 0.818 44 H 0.198 0.802 45 H 0.196 0.804 46 H 0.239 0.761 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 -0.553 3.815 10.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.046 0.954 7 C -0.213 4.213 8 N -0.361 5.361 9 C -0.366 4.366 10 H 0.067 0.933 11 C -0.234 4.234 12 N -0.551 5.551 13 Si 0.758 3.242 14 H -0.212 1.212 15 H -0.237 1.237 16 H -0.226 1.226 17 N -0.320 5.320 18 C 0.358 3.642 19 O -0.466 6.466 20 C -0.084 4.084 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.005 4.005 24 N -0.088 5.088 25 C -0.186 4.186 26 C -0.180 4.180 27 N -0.232 5.232 28 C -0.097 4.097 29 C -0.061 4.061 30 N -0.097 5.097 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.212 0.788 40 H 0.052 0.948 41 H 0.251 0.749 42 H 0.177 0.823 43 H 0.199 0.801 44 H 0.215 0.785 45 H 0.213 0.787 46 H 0.255 0.745 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.920 -0.001 3.759 10.609 hybrid contribution 1.670 -0.086 0.475 1.739 sum -8.250 -0.088 4.234 9.274 Atomic orbital electron populations 1.22106 0.93611 1.02682 1.02549 1.21044 0.94515 0.96405 0.84225 0.92117 1.22132 0.94931 1.01472 0.97298 1.20483 0.92106 0.94388 0.87722 0.95412 1.22272 0.99976 1.00780 0.98285 1.42484 1.17654 1.40250 1.35710 1.19145 0.94536 1.12434 1.10519 0.93348 1.24877 0.98992 0.99769 0.99790 1.69759 1.36467 1.23909 1.24968 0.85840 0.84329 0.76839 0.77180 1.21220 1.23740 1.22622 1.45928 1.63037 1.14780 1.08292 1.17893 0.77034 0.85563 0.83719 1.90671 1.53911 1.16183 1.85849 1.21322 1.01007 0.91536 0.94584 1.22087 0.96574 1.02127 0.91232 1.21478 0.98589 0.91286 1.00963 1.19200 1.00123 0.93243 0.87908 1.43161 1.47304 1.09646 1.08725 1.23303 1.07864 0.85252 1.02149 1.22781 1.06024 0.98772 0.90462 1.70325 1.19161 1.00496 1.33249 1.25954 1.02500 1.01831 0.79389 1.22676 0.96907 1.00987 0.85513 1.67640 1.05855 1.07630 1.28539 0.89325 0.91529 0.93964 0.90743 0.87177 0.93421 0.91303 0.95396 0.78782 0.94780 0.74915 0.82276 0.80077 0.78545 0.78709 0.74535 0.81418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.48 71.98 0.68 -2.94 16 2 C 0.14 4.32 2.57 44.99 0.12 4.44 16 3 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 4 C -0.12 -3.24 4.43 30.60 0.14 -3.10 16 5 C 0.16 5.75 2.89 45.00 0.13 5.88 16 6 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 7 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 8 N -0.72 -31.75 3.84 -322.92 -1.24 -32.99 16 9 C -0.23 -12.11 9.93 84.03 0.83 -11.28 16 10 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 11 C -0.04 -2.00 5.50 84.86 0.47 -1.54 16 12 N -0.90 -46.14 11.95 21.65 0.26 -45.88 16 13 Si 0.92 45.28 29.55 68.60 2.03 47.30 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 16 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 17 N -0.67 -24.01 3.79 -445.27 -1.69 -25.70 16 18 C 0.57 22.61 7.77 86.83 0.67 23.28 16 19 O -0.58 -24.93 15.98 -3.84 -0.06 -24.99 16 20 C 0.05 1.99 6.75 41.87 0.28 2.28 16 21 C -0.10 -3.03 9.62 22.59 0.22 -2.81 16 22 C -0.10 -2.42 9.57 22.55 0.22 -2.20 16 23 C 0.09 2.55 6.66 38.36 0.26 2.81 16 24 N -0.41 -10.43 2.98 -349.85 -1.04 -11.48 16 25 C -0.06 -1.35 10.86 83.03 0.90 -0.45 16 26 C -0.04 -0.86 11.85 83.51 0.99 0.13 16 27 N -0.51 -13.87 11.24 -199.68 -2.25 -16.12 16 28 C 0.18 4.32 11.93 179.99 2.15 6.47 16 29 C 0.10 3.29 10.56 85.01 0.90 4.19 16 30 N -0.39 -14.23 8.50 -184.47 -1.57 -15.80 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.38 17.18 5.70 -92.71 -0.53 16.65 16 40 H 0.24 12.37 8.31 -92.71 -0.77 11.60 16 41 H 0.41 15.43 5.83 -92.71 -0.54 14.89 16 42 H 0.16 4.49 7.63 -2.91 -0.02 4.47 16 43 H 0.18 2.95 6.88 -2.91 -0.02 2.93 16 44 H 0.20 3.86 7.16 -2.91 -0.02 3.84 16 45 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.24 3.60 7.12 -2.91 -0.02 3.58 16 47 H 0.17 4.95 6.82 -2.91 -0.02 4.93 16 Total: -1.00 -66.35 391.16 4.01 -62.34 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.06 Total: 42.39 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 9.63 Total: 20.92 kcal Atomic # 7 Polarization: -140.43 SS G_CDS: -7.53 Total: -147.96 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -66.35 4.01 -62.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135916607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.175 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds