Wall clock time and date at job start Wed Apr 1 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21507 * 120.00080 * 0.02562 * 9 8 5 11 11 C 1.48162 * 119.99792 * 180.02562 * 9 8 5 12 12 C 1.39938 * 120.89368 * 359.97438 * 11 9 8 13 13 C 1.38044 * 119.13732 * 179.97438 * 12 11 9 14 14 N 1.31854 * 120.98127 * 359.97438 * 13 12 11 15 15 C 1.32228 * 121.97133 * 0.02562 * 14 13 12 16 16 N 1.39849 * 119.62084 * 179.97438 * 15 14 13 17 17 C 1.37171 * 126.49087 * 4.71170 * 16 15 14 18 18 C 1.34620 * 106.82763 * 179.84293 * 17 16 15 19 19 N 1.34153 * 108.21596 * 0.42113 * 18 17 16 20 20 C 1.30483 * 109.37213 * 359.73231 * 19 18 17 21 21 C 1.38907 * 120.74696 * 359.73692 * 15 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47364 * 179.72253 * 27 25 23 29 29 H 1.48508 * 109.46883 * 299.72375 * 27 25 23 30 30 H 1.48497 * 109.46870 * 59.72186 * 27 25 23 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 38 38 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 39 39 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 40 40 H 1.07997 * 120.43582 * 359.96011 * 12 11 9 41 41 H 1.08001 * 119.51191 * 179.97438 * 13 12 11 42 42 H 1.07995 * 126.58581 * 359.97438 * 17 16 15 43 43 H 1.07998 * 125.88593 * 180.15839 * 18 17 16 44 44 H 1.08000 * 125.71864 * 179.97438 * 20 19 18 45 45 H 1.08004 * 120.52551 * 180.26395 * 21 15 14 46 46 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9870 -0.0833 -0.2537 11 6 5.9705 -1.7204 1.4172 12 6 5.2816 -2.7681 2.0384 13 6 5.8711 -3.4234 3.1009 14 7 7.0673 -3.0760 3.5334 15 6 7.7545 -2.0927 2.9772 16 7 9.0193 -1.7650 3.4761 17 6 9.7029 -2.4266 4.4643 18 6 10.8731 -1.7814 4.6276 19 7 10.9052 -0.7481 3.7727 20 6 9.8012 -0.7272 3.0774 21 6 7.2366 -1.3849 1.9001 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 3.2931 -0.6500 6.1700 29 1 3.7495 1.3891 4.9391 30 1 1.4684 0.8113 5.5254 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 5.1509 -1.1482 -2.6697 37 1 3.7724 -2.2740 -2.6699 38 1 3.6264 -0.6885 -3.4657 39 1 3.6648 -2.0583 0.2386 40 1 4.3015 -3.0602 1.6914 41 1 5.3447 -4.2326 3.5851 42 1 9.3678 -3.2989 5.0057 43 1 11.6499 -2.0472 5.3292 44 1 9.5507 -0.0059 2.3136 45 1 7.8028 -0.5852 1.4459 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146450950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:54 Heat of formation + Delta-G solvation = 90.859367 kcal Electronic energy + Delta-G solvation = -30843.322710 eV Core-core repulsion = 26835.331596 eV Total energy + Delta-G solvation = -4007.991114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21009 -40.29036 -39.02118 -37.08138 -34.57322 -34.17724 -32.91419 -32.33295 -30.73104 -29.85775 -29.11135 -28.43090 -26.55903 -24.77227 -24.04209 -23.61628 -22.03812 -21.06280 -20.66164 -20.53940 -19.98204 -18.66116 -17.66172 -16.86469 -16.36378 -15.77735 -15.61693 -15.44096 -15.17697 -14.71131 -14.54653 -14.14963 -13.84805 -13.81891 -13.63849 -13.56500 -13.46363 -13.26756 -13.24083 -13.04775 -12.32206 -12.18348 -11.90016 -11.80406 -11.73760 -11.27985 -10.90354 -10.67290 -10.61115 -10.56759 -10.30297 -10.11808 -10.10742 -9.97156 -9.68269 -9.42265 -9.34660 -9.15999 -8.68091 -8.65514 -8.29210 -7.19096 -6.30376 -3.26486 0.82684 1.03648 2.31386 2.55413 3.15076 3.21962 3.41929 3.44106 3.45084 3.60326 4.10163 4.45624 4.50449 4.64425 4.72084 4.84597 4.93658 5.08838 5.16321 5.19052 5.23625 5.38650 5.45524 5.46803 5.50314 5.64571 5.67407 5.72836 5.78404 5.78983 5.89160 5.93403 6.02383 6.14971 6.18824 6.24097 6.29013 6.31652 6.36098 6.58972 6.64400 6.75646 6.80530 6.87254 7.23049 7.62910 7.78815 7.90101 8.07985 8.49225 8.51155 8.97358 9.81857 9.97644 11.14096 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004142 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.051307 B = 6758.708452 C = 8275.612718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.051 0.949 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.087 0.913 7 C -0.163 4.163 8 N -0.690 5.690 9 C 0.571 3.429 10 O -0.547 6.547 11 C -0.066 4.066 12 C -0.092 4.092 13 C 0.149 3.851 14 N -0.486 5.486 15 C 0.315 3.685 16 N -0.401 5.401 17 C -0.024 4.024 18 C -0.039 4.039 19 N -0.484 5.484 20 C 0.192 3.808 21 C -0.124 4.124 22 N -0.727 5.727 23 C -0.307 4.307 24 H 0.063 0.937 25 C -0.041 4.041 26 N -0.931 5.931 27 Si 1.067 2.933 28 H -0.284 1.284 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.144 0.856 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.173 0.827 44 H 0.210 0.790 45 H 0.146 0.854 46 H 0.359 0.641 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -4.207 -7.160 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.069 0.931 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.105 0.895 7 C -0.221 4.221 8 N -0.342 5.342 9 C 0.357 3.643 10 O -0.426 6.426 11 C -0.077 4.077 12 C -0.114 4.114 13 C -0.009 4.009 14 N -0.199 5.199 15 C 0.088 3.912 16 N -0.082 5.082 17 C -0.155 4.155 18 C -0.184 4.184 19 N -0.202 5.202 20 C -0.090 4.090 21 C -0.147 4.147 22 N -0.371 5.371 23 C -0.437 4.437 24 H 0.081 0.919 25 C -0.238 4.238 26 N -0.578 5.578 27 Si 0.899 3.101 28 H -0.210 1.210 29 H -0.225 1.225 30 H -0.223 1.223 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.237 0.763 40 H 0.162 0.838 41 H 0.187 0.813 42 H 0.197 0.803 43 H 0.190 0.810 44 H 0.226 0.774 45 H 0.164 0.836 46 H 0.193 0.807 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.257 -3.345 -5.318 8.192 hybrid contribution -2.039 -0.418 -1.698 2.686 sum 3.218 -3.763 -7.016 8.587 Atomic orbital electron populations 1.22389 0.98963 1.00739 1.00210 1.20257 0.91820 0.95795 0.85761 0.93099 1.22246 0.93832 1.01640 0.99687 1.20884 0.92557 0.97415 0.84620 0.89513 1.22210 1.01944 1.00905 0.97069 1.45852 1.17346 1.37274 1.33715 1.17872 0.81499 0.82806 0.82092 1.90707 1.62066 1.30446 1.59347 1.20061 0.94042 0.96644 0.97002 1.22264 0.99144 0.94241 0.95739 1.22372 0.88133 0.98168 0.92245 1.66785 1.09313 1.14397 1.29359 1.17865 0.85647 0.94760 0.92908 1.43050 1.12569 1.23626 1.28985 1.22898 0.94408 1.02297 0.95897 1.22323 0.98082 0.95448 1.02586 1.70307 1.20371 1.21015 1.08482 1.25315 0.87643 0.93116 1.02937 1.21417 0.96290 1.00904 0.96086 1.42507 1.78880 1.09177 1.06504 1.20079 1.39737 0.95088 0.88840 0.91850 1.25475 0.99811 0.97539 1.01007 1.71095 1.51613 1.07901 1.27213 0.83365 0.75943 0.74654 0.76133 1.20970 1.22528 1.22320 0.94308 0.93675 0.92740 0.91755 0.90346 0.92225 0.92695 0.91790 0.76330 0.83841 0.81259 0.80280 0.80969 0.77363 0.83633 0.80700 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.49 37.16 0.35 -2.23 16 2 C 0.17 2.94 2.89 -67.93 -0.20 2.75 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.14 -1.79 4.43 -26.73 -0.12 -1.91 16 5 C 0.15 2.14 2.57 -67.93 -0.17 1.97 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 7 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 8 N -0.69 -10.97 3.76 -54.65 -0.21 -11.18 16 9 C 0.57 10.41 7.76 -12.18 -0.09 10.31 16 10 O -0.55 -11.14 16.10 5.36 0.09 -11.05 16 11 C -0.07 -1.16 5.91 -104.68 -0.62 -1.77 16 12 C -0.09 -1.52 7.95 -39.02 -0.31 -1.83 16 13 C 0.15 2.43 11.17 -17.61 -0.20 2.24 16 14 N -0.49 -8.32 9.87 -12.34 -0.12 -8.44 16 15 C 0.31 5.34 7.50 -154.42 -1.16 4.19 16 16 N -0.40 -6.37 2.98 -63.85 -0.19 -6.56 16 17 C -0.02 -0.35 11.17 -16.44 -0.18 -0.53 16 18 C -0.04 -0.54 11.85 -17.82 -0.21 -0.75 16 19 N -0.48 -7.63 11.24 -14.46 -0.16 -7.79 16 20 C 0.19 2.87 11.89 -89.58 -1.07 1.80 16 21 C -0.12 -2.10 9.07 -38.83 -0.35 -2.46 16 22 N -0.73 -14.82 3.84 -53.43 -0.21 -15.03 16 23 C -0.31 -7.50 9.93 -15.06 -0.15 -7.65 16 24 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 25 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 26 N -0.93 -22.83 12.26 55.49 0.68 -22.15 16 27 Si 1.07 24.62 29.92 -169.99 -5.09 19.54 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16 30 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 6.15 4.65 -40.82 -0.19 5.96 16 40 H 0.14 2.29 4.84 -52.49 -0.25 2.03 16 41 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16 43 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.21 2.54 7.07 -52.49 -0.37 2.17 16 45 H 0.15 2.28 6.46 -52.48 -0.34 1.94 16 46 H 0.36 7.16 4.54 -40.82 -0.19 6.97 16 47 H 0.25 5.64 4.80 -40.82 -0.20 5.44 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -29.70 385.01 -9.83 -39.53 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -6.21 Total: 15.92 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.22 Total: 1.42 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -0.21 Total: -71.15 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.70 -9.83 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146450950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.390 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds