Wall clock time and date at job start Wed Apr 1 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21507 * 120.00080 * 0.02562 * 9 8 5 11 11 C 1.48162 * 119.99792 * 180.02562 * 9 8 5 12 12 C 1.39938 * 120.89368 * 359.97438 * 11 9 8 13 13 C 1.38044 * 119.13732 * 179.97438 * 12 11 9 14 14 N 1.31854 * 120.98127 * 359.97438 * 13 12 11 15 15 C 1.32228 * 121.97133 * 0.02562 * 14 13 12 16 16 N 1.39849 * 119.62084 * 179.97438 * 15 14 13 17 17 C 1.37171 * 126.49087 * 4.71170 * 16 15 14 18 18 C 1.34620 * 106.82763 * 179.84293 * 17 16 15 19 19 N 1.34153 * 108.21596 * 0.42113 * 18 17 16 20 20 C 1.30483 * 109.37213 * 359.73231 * 19 18 17 21 21 C 1.38907 * 120.74696 * 359.73692 * 15 14 13 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47364 * 179.72253 * 27 25 23 29 29 H 1.48508 * 109.46883 * 299.72375 * 27 25 23 30 30 H 1.48497 * 109.46870 * 59.72186 * 27 25 23 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 38 38 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 39 39 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 40 40 H 1.07997 * 120.43582 * 359.96011 * 12 11 9 41 41 H 1.08001 * 119.51191 * 179.97438 * 13 12 11 42 42 H 1.07995 * 126.58581 * 359.97438 * 17 16 15 43 43 H 1.07998 * 125.88593 * 180.15839 * 18 17 16 44 44 H 1.08000 * 125.71864 * 179.97438 * 20 19 18 45 45 H 1.08004 * 120.52551 * 180.26395 * 21 15 14 46 46 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9870 -0.0833 -0.2537 11 6 5.9705 -1.7204 1.4172 12 6 5.2816 -2.7681 2.0384 13 6 5.8711 -3.4234 3.1009 14 7 7.0673 -3.0760 3.5334 15 6 7.7545 -2.0927 2.9772 16 7 9.0193 -1.7650 3.4761 17 6 9.7029 -2.4266 4.4643 18 6 10.8731 -1.7814 4.6276 19 7 10.9052 -0.7481 3.7727 20 6 9.8012 -0.7272 3.0774 21 6 7.2366 -1.3849 1.9001 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 3.2931 -0.6500 6.1700 29 1 3.7495 1.3891 4.9391 30 1 1.4684 0.8113 5.5254 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 5.1509 -1.1482 -2.6697 37 1 3.7724 -2.2740 -2.6699 38 1 3.6264 -0.6885 -3.4657 39 1 3.6648 -2.0583 0.2386 40 1 4.3015 -3.0602 1.6914 41 1 5.3447 -4.2326 3.5851 42 1 9.3678 -3.2989 5.0057 43 1 11.6499 -2.0472 5.3292 44 1 9.5507 -0.0059 2.3136 45 1 7.8028 -0.5852 1.4459 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146450950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:53 Heat of formation + Delta-G solvation = 76.456762 kcal Electronic energy + Delta-G solvation = -30843.947253 eV Core-core repulsion = 26835.331596 eV Total energy + Delta-G solvation = -4008.615658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38825 -41.62294 -40.34256 -38.48700 -36.05616 -35.44440 -34.36435 -33.77094 -32.02380 -31.11161 -30.29831 -29.95021 -27.68626 -26.08896 -25.56726 -25.13113 -23.27574 -22.26376 -21.93711 -21.76838 -21.29575 -19.92458 -19.42531 -18.19741 -17.65691 -17.10604 -16.87106 -16.74110 -16.65945 -16.03294 -15.97351 -15.64782 -15.46661 -14.98330 -14.96813 -14.83761 -14.72100 -14.50214 -14.39662 -14.33764 -13.55176 -13.42175 -13.16106 -13.07514 -12.89507 -12.77325 -12.57750 -12.23054 -11.94064 -11.83157 -11.80379 -11.65225 -11.38306 -11.27546 -11.12651 -11.06107 -10.88104 -10.77599 -10.02356 -9.85907 -9.50770 -8.88901 -8.19531 -5.11784 -0.48671 -0.27902 1.11326 1.34180 1.55158 1.58452 1.74057 1.83437 2.03243 2.14754 2.66987 2.77054 3.21834 3.40011 3.50542 3.58644 3.63827 3.71818 3.83233 3.85613 3.89506 4.07308 4.22197 4.29995 4.40345 4.48371 4.49720 4.54763 4.60043 4.69539 4.76853 4.79951 4.83764 4.89807 5.00587 5.04509 5.07369 5.10977 5.31279 5.33009 5.34386 5.52945 5.59020 5.65649 5.73301 6.02663 6.44835 6.62651 6.68919 6.89716 7.11769 7.23915 8.08177 8.22739 9.28397 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004142 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.051307 B = 6758.708452 C = 8275.612718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.027 0.973 4 C -0.121 4.121 5 C 0.145 3.855 6 H 0.060 0.940 7 C -0.153 4.153 8 N -0.681 5.681 9 C 0.564 3.436 10 O -0.576 6.576 11 C -0.077 4.077 12 C -0.090 4.090 13 C 0.145 3.855 14 N -0.493 5.493 15 C 0.314 3.686 16 N -0.411 5.411 17 C -0.036 4.036 18 C -0.038 4.038 19 N -0.505 5.505 20 C 0.185 3.815 21 C -0.133 4.133 22 N -0.729 5.729 23 C -0.315 4.315 24 H 0.042 0.958 25 C -0.073 4.073 26 N -0.941 5.941 27 Si 1.094 2.906 28 H -0.294 1.294 29 H -0.306 1.306 30 H -0.288 1.288 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.025 0.975 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.402 0.598 40 H 0.150 0.850 41 H 0.191 0.809 42 H 0.194 0.806 43 H 0.203 0.797 44 H 0.228 0.772 45 H 0.153 0.847 46 H 0.361 0.639 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -5.293 -8.254 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.045 0.955 4 C -0.159 4.159 5 C 0.041 3.959 6 H 0.078 0.922 7 C -0.211 4.211 8 N -0.332 5.332 9 C 0.351 3.649 10 O -0.457 6.457 11 C -0.089 4.089 12 C -0.111 4.111 13 C -0.013 4.013 14 N -0.205 5.205 15 C 0.087 3.913 16 N -0.092 5.092 17 C -0.166 4.166 18 C -0.183 4.183 19 N -0.222 5.222 20 C -0.096 4.096 21 C -0.156 4.156 22 N -0.374 5.374 23 C -0.447 4.447 24 H 0.060 0.940 25 C -0.269 4.269 26 N -0.589 5.589 27 Si 0.926 3.074 28 H -0.220 1.220 29 H -0.234 1.234 30 H -0.215 1.215 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.240 0.760 40 H 0.167 0.833 41 H 0.208 0.792 42 H 0.211 0.789 43 H 0.220 0.780 44 H 0.244 0.756 45 H 0.171 0.829 46 H 0.196 0.804 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.821 -4.449 -6.433 9.188 hybrid contribution -1.839 -0.066 -1.371 2.295 sum 2.982 -4.515 -7.804 9.496 Atomic orbital electron populations 1.22257 0.97658 1.01067 1.00362 1.20432 0.92666 0.94833 0.86259 0.95526 1.22164 0.92648 1.02349 0.98776 1.21039 0.93427 0.96068 0.85317 0.92215 1.22119 1.00811 1.02071 0.96089 1.45898 1.16520 1.36945 1.33810 1.18069 0.82083 0.82585 0.82181 1.90682 1.62945 1.31737 1.60346 1.20197 0.94500 0.97003 0.97154 1.22331 0.99298 0.93852 0.95660 1.22754 0.87987 0.98484 0.92035 1.66847 1.09630 1.14542 1.29510 1.17996 0.86055 0.94500 0.92715 1.43170 1.12339 1.24171 1.29553 1.23269 0.94583 1.02872 0.95845 1.22855 0.98561 0.94516 1.02327 1.70341 1.20740 1.21913 1.09248 1.25779 0.87452 0.93232 1.03182 1.21543 0.96365 1.01295 0.96353 1.42467 1.79301 1.09168 1.06433 1.20023 1.39818 0.94383 0.90461 0.93982 1.25927 1.00569 0.98178 1.02229 1.71075 1.52307 1.07667 1.27830 0.82972 0.75879 0.73731 0.74858 1.21962 1.23398 1.21519 0.91212 0.93157 0.95542 0.90100 0.87042 0.94021 0.90986 0.89357 0.75964 0.83267 0.79240 0.78925 0.78036 0.75599 0.82950 0.80421 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.49 71.98 0.68 -3.91 16 2 C 0.17 5.47 2.89 44.99 0.13 5.60 16 3 H 0.03 1.00 8.08 -2.38 -0.02 0.98 16 4 C -0.12 -2.86 4.43 30.60 0.14 -2.72 16 5 C 0.15 3.95 2.57 44.99 0.12 4.07 16 6 H 0.06 1.97 7.58 -2.39 -0.02 1.96 16 7 C -0.15 -3.23 9.48 71.98 0.68 -2.54 16 8 N -0.68 -21.21 3.76 -445.12 -1.67 -22.88 16 9 C 0.56 20.69 7.76 86.88 0.67 21.36 16 10 O -0.58 -23.88 16.10 -3.74 -0.06 -23.94 16 11 C -0.08 -2.71 5.91 -19.90 -0.12 -2.83 16 12 C -0.09 -2.93 7.95 22.64 0.18 -2.75 16 13 C 0.15 4.61 11.17 84.64 0.95 5.55 16 14 N -0.49 -16.48 9.87 -192.94 -1.90 -18.38 16 15 C 0.31 10.54 7.50 132.77 1.00 11.54 16 16 N -0.41 -12.77 2.98 -355.91 -1.06 -13.83 16 17 C -0.04 -1.00 11.17 83.03 0.93 -0.07 16 18 C -0.04 -1.01 11.85 83.51 0.99 -0.02 16 19 N -0.50 -15.41 11.24 -199.68 -2.24 -17.65 16 20 C 0.18 5.43 11.89 179.99 2.14 7.57 16 21 C -0.13 -4.51 9.07 22.76 0.21 -4.30 16 22 N -0.73 -29.46 3.84 -322.94 -1.24 -30.70 16 23 C -0.31 -15.55 9.93 84.03 0.83 -14.71 16 24 H 0.04 2.22 7.83 -2.91 -0.02 2.19 16 25 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 26 N -0.94 -45.64 12.26 21.65 0.27 -45.37 16 27 Si 1.09 50.33 29.92 68.60 2.05 52.38 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 30 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.40 11.97 4.65 -92.71 -0.43 11.54 16 40 H 0.15 4.63 4.84 -2.91 -0.01 4.62 16 41 H 0.19 5.11 8.06 -2.91 -0.02 5.08 16 42 H 0.19 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.20 3.86 8.06 -2.91 -0.02 3.83 16 44 H 0.23 5.44 7.07 -2.91 -0.02 5.42 16 45 H 0.15 4.84 6.46 -2.91 -0.02 4.82 16 46 H 0.36 14.08 4.54 -92.71 -0.42 13.66 16 47 H 0.25 11.36 4.80 -92.71 -0.45 10.91 16 Total: -1.00 -64.22 385.01 4.61 -59.61 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.48 Total: 42.15 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 9.99 Total: 18.62 kcal Atomic # 7 Polarization: -140.96 SS G_CDS: -7.86 Total: -148.82 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Total: -64.22 4.61 -59.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146450950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.065 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds