Wall clock time and date at job start Wed Apr 1 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.52999 * 109.47142 * 239.99559 * 2 1 3 5 5 C 1.53000 * 109.47009 * 175.00161 * 4 2 1 6 6 H 1.08990 * 109.47233 * 55.00336 * 5 4 2 7 7 C 1.53000 * 109.46971 * 175.00512 * 5 4 2 8 8 N 1.46504 * 109.46941 * 295.00081 * 5 4 2 9 9 C 1.34774 * 119.99739 * 155.00554 * 8 5 4 10 10 O 1.21666 * 120.00219 * 359.97438 * 9 8 5 11 11 C 1.46927 * 120.00268 * 180.02562 * 9 8 5 12 12 N 1.37125 * 127.34650 * 5.76798 * 11 9 8 13 13 H 0.97001 * 125.90058 * 0.04590 * 12 11 9 14 14 N 1.28615 * 108.19282 * 180.28757 * 12 11 9 15 15 N 1.28453 * 111.22358 * 359.75723 * 14 12 11 16 16 C 1.34172 * 109.40007 * 359.97438 * 15 14 12 17 17 C 1.48201 * 127.06132 * 179.97438 * 16 15 14 18 18 C 1.39430 * 120.12625 * 224.37521 * 17 16 15 19 19 C 1.38000 * 119.86626 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.12708 * 0.02562 * 19 18 17 21 21 C 1.38342 * 120.26789 * 0.02562 * 20 19 18 22 22 C 1.37995 * 120.12544 * 359.97438 * 21 20 19 23 23 N 1.46502 * 109.47057 * 120.00005 * 2 1 3 24 24 C 1.36944 * 119.99681 * 275.00183 * 23 2 1 25 25 H 1.07999 * 120.00123 * 359.97438 * 24 23 2 26 26 C 1.38814 * 119.99598 * 180.02562 * 24 23 2 27 27 N 1.31612 * 120.00337 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 119.99631 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47150 * 59.99601 * 28 26 24 30 30 H 1.48498 * 109.46998 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47196 * 299.99498 * 28 26 24 32 32 H 1.08997 * 109.46836 * 300.00467 * 1 2 3 33 33 H 1.08997 * 109.46619 * 59.99941 * 1 2 3 34 34 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46843 * 55.00065 * 4 2 1 36 36 H 1.09003 * 109.47193 * 295.00613 * 4 2 1 37 37 H 1.08997 * 109.47419 * 180.02562 * 7 5 4 38 38 H 1.09008 * 109.46871 * 299.99662 * 7 5 4 39 39 H 1.08994 * 109.47710 * 59.99607 * 7 5 4 40 40 H 0.96990 * 119.99974 * 335.00020 * 8 5 4 41 41 H 1.07997 * 120.07023 * 0.25369 * 18 17 16 42 42 H 1.07997 * 119.93324 * 179.97438 * 19 18 17 43 43 H 1.08001 * 119.86656 * 179.97438 * 20 19 18 44 44 H 1.07993 * 119.93839 * 179.97438 * 21 20 19 45 45 H 1.08000 * 120.06144 * 179.97438 * 22 21 20 46 46 H 0.96998 * 120.00427 * 95.00058 * 23 2 1 47 47 H 0.97001 * 120.00371 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0852 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2134 -1.0867 10 8 5.9381 0.4315 -0.5716 11 6 5.5454 2.6203 -1.2655 12 7 4.7578 3.6461 -1.7213 13 1 3.8282 3.5740 -1.9887 14 7 5.4662 4.7195 -1.7376 15 7 6.6616 4.4940 -1.3248 16 6 6.7857 3.1967 -1.0059 17 6 7.9967 2.5156 -0.4902 18 6 8.3766 1.2774 -1.0066 19 6 9.5056 0.6482 -0.5229 20 6 10.2594 1.2434 0.4728 21 6 9.8868 2.4713 0.9898 22 6 8.7599 3.1100 0.5140 23 7 2.0184 -0.6906 1.1962 24 6 2.1491 -0.0074 2.3758 25 1 1.8926 1.0406 2.4242 26 6 2.6123 -0.6617 3.5091 27 7 2.9253 -1.9387 3.4500 28 14 2.7913 0.2705 5.1180 29 1 1.4691 0.8073 5.5288 30 1 3.3001 -0.6479 6.1682 31 1 3.7465 1.3929 4.9362 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.6054 -0.2618 -2.1369 36 1 1.7516 -1.7716 -1.2055 37 1 5.1715 -1.3619 -2.5381 38 1 3.8001 -2.4821 -2.3593 39 1 3.6547 -1.0595 -3.4192 40 1 3.3285 1.4127 -1.9028 41 1 7.7912 0.8138 -1.7868 42 1 9.8006 -0.3110 -0.9218 43 1 11.1419 0.7470 0.8486 44 1 10.4789 2.9309 1.7673 45 1 8.4697 4.0683 0.9186 46 1 2.2491 -1.6318 1.1527 47 1 3.2487 -2.3959 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146625161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:01 Heat of formation + Delta-G solvation = 88.056378 kcal Electronic energy + Delta-G solvation = -30314.967761 eV Core-core repulsion = 26306.855100 eV Total energy + Delta-G solvation = -4008.112661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.37414 -39.67307 -38.86203 -36.97377 -34.74080 -33.94350 -32.63625 -32.14019 -30.89443 -30.77301 -29.40879 -28.66335 -26.45596 -24.82063 -23.68412 -23.63623 -22.49899 -22.09906 -20.94336 -20.52872 -19.86305 -19.17476 -17.35056 -17.03987 -16.50610 -16.47268 -16.07473 -15.29810 -14.90051 -14.80455 -14.56372 -14.21242 -14.04223 -13.71420 -13.61992 -13.34093 -13.10075 -12.84027 -12.79126 -12.32958 -12.26833 -12.13997 -11.83404 -11.73783 -11.49583 -11.24700 -11.16355 -11.08123 -10.85626 -10.80079 -10.69585 -10.55434 -10.31597 -10.07951 -9.99454 -9.72663 -9.66623 -9.01080 -8.91728 -8.77362 -8.42992 -6.97606 -5.76985 -3.05615 0.60191 1.32429 1.55536 2.22652 2.25227 2.99109 3.13999 3.43693 3.48953 3.49255 3.86192 4.05020 4.42646 4.58900 4.71598 4.88287 4.99418 5.05357 5.12107 5.18985 5.25507 5.34984 5.42252 5.55337 5.56424 5.62286 5.69938 5.74856 5.80759 5.90352 5.99792 6.01098 6.12674 6.17165 6.21531 6.31304 6.39132 6.45383 6.49494 6.53461 6.59099 6.61584 6.64044 6.78791 6.97793 7.03728 7.40384 7.67295 8.08041 8.14350 8.41129 9.52821 10.08446 10.42519 11.45392 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.004086 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.127413 B = 6851.398383 C = 8054.320226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.042 0.958 4 C -0.132 4.132 5 C 0.145 3.855 6 H 0.112 0.888 7 C -0.162 4.162 8 N -0.710 5.710 9 C 0.591 3.409 10 O -0.491 6.491 11 C -0.049 4.049 12 N -0.371 5.371 13 H 0.452 0.548 14 N -0.051 5.051 15 N -0.256 5.256 16 C 0.096 3.904 17 C -0.020 4.020 18 C -0.054 4.054 19 C -0.124 4.124 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.084 4.084 23 N -0.720 5.720 24 C -0.239 4.239 25 H 0.065 0.935 26 C -0.008 4.008 27 N -0.929 5.929 28 Si 0.901 3.099 29 H -0.287 1.287 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.388 0.612 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.383 0.617 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 6.326 -15.104 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.060 0.940 4 C -0.171 4.171 5 C 0.042 3.958 6 H 0.129 0.871 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.373 3.627 10 O -0.362 6.362 11 C -0.184 4.184 12 N -0.097 5.097 13 H 0.299 0.701 14 N -0.032 5.032 15 N -0.122 5.122 16 C -0.044 4.044 17 C -0.023 4.023 18 C -0.073 4.073 19 C -0.142 4.142 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.103 4.103 23 N -0.361 5.361 24 C -0.370 4.370 25 H 0.083 0.917 26 C -0.204 4.204 27 N -0.577 5.577 28 Si 0.732 3.268 29 H -0.214 1.214 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.221 0.779 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.104 7.345 -14.854 18.029 hybrid contribution -1.153 -0.550 0.901 1.563 sum 5.950 6.795 -13.953 16.621 Atomic orbital electron populations 1.22469 0.99462 1.00941 0.99775 1.20207 0.91676 0.95291 0.86643 0.94037 1.22198 0.93383 1.02624 0.98873 1.21148 0.95436 0.78877 1.00346 0.87056 1.22191 1.01630 1.00390 0.97778 1.45890 1.15485 1.12418 1.62295 1.16561 0.82905 0.84021 0.79229 1.90941 1.50474 1.53432 1.41356 1.22737 0.93038 0.91874 1.10776 1.45357 1.14477 1.06111 1.43782 0.70138 1.78045 0.98944 1.09052 1.17197 1.75208 1.08761 1.14132 1.14139 1.20782 0.92914 0.89819 1.00837 1.17485 0.92025 0.94688 0.98058 1.21060 0.94982 0.92506 0.98758 1.21007 0.95411 0.99933 0.97893 1.21235 0.99551 0.95357 0.96373 1.21001 0.97246 0.95895 1.00600 1.21124 0.94278 0.99562 0.95307 1.42374 1.78012 1.10562 1.05194 1.19063 1.36995 0.93587 0.87393 0.91701 1.24676 1.01918 0.95903 0.97912 1.69621 1.50553 1.08576 1.28977 0.86366 0.77692 0.78820 0.83916 1.21383 1.21590 1.21312 0.92861 0.94765 0.93404 0.92006 0.90211 0.92329 0.91354 0.93077 0.77932 0.85882 0.85800 0.86069 0.85829 0.85771 0.78269 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.00 2.84 -67.93 -0.19 2.80 16 3 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 4 C -0.13 -1.77 4.29 -26.73 -0.11 -1.88 16 5 C 0.15 2.05 2.52 -67.93 -0.17 1.87 16 6 H 0.11 2.14 7.05 -51.93 -0.37 1.77 16 7 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 8 N -0.71 -8.83 4.44 -55.04 -0.24 -9.08 16 9 C 0.59 8.89 7.57 -12.74 -0.10 8.79 16 10 O -0.49 -9.12 13.09 5.22 0.07 -9.05 16 11 C -0.05 -0.68 7.20 -81.62 -0.59 -1.26 16 12 N -0.37 -3.99 6.96 33.67 0.23 -3.76 16 13 H 0.45 2.91 8.35 -190.36 -1.59 1.33 16 14 N -0.05 -0.67 13.31 60.35 0.80 0.13 16 15 N -0.26 -3.86 12.38 33.46 0.41 -3.45 16 16 C 0.10 1.45 6.77 -82.39 -0.56 0.90 16 17 C -0.02 -0.31 5.49 -104.91 -0.58 -0.89 16 18 C -0.05 -0.78 7.68 -39.22 -0.30 -1.08 16 19 C -0.12 -1.58 10.03 -39.63 -0.40 -1.98 16 20 C -0.11 -1.26 10.04 -39.51 -0.40 -1.66 16 21 C -0.13 -1.58 10.03 -39.63 -0.40 -1.98 16 22 C -0.08 -1.17 9.78 -39.23 -0.38 -1.56 16 23 N -0.72 -16.81 4.49 -53.42 -0.24 -17.05 16 24 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 25 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 27 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 28 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 31 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.39 3.47 7.90 -40.82 -0.32 3.15 16 41 H 0.12 1.74 6.92 -52.49 -0.36 1.37 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.38 9.64 7.80 -40.82 -0.32 9.33 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -34.09 396.35 -8.98 -43.07 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.97 Total: 11.35 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.71 Total: -8.74 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 1.69 Total: -60.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.09 -8.98 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146625161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.124 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds