Wall clock time and date at job start Wed Apr 1 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.52999 * 109.47142 * 239.99559 * 2 1 3 5 5 C 1.53000 * 109.47009 * 175.00161 * 4 2 1 6 6 H 1.08990 * 109.47233 * 55.00336 * 5 4 2 7 7 C 1.53000 * 109.46971 * 175.00512 * 5 4 2 8 8 N 1.46504 * 109.46941 * 295.00081 * 5 4 2 9 9 C 1.34774 * 119.99739 * 155.00554 * 8 5 4 10 10 O 1.21666 * 120.00219 * 359.97438 * 9 8 5 11 11 C 1.46927 * 120.00268 * 180.02562 * 9 8 5 12 12 N 1.37125 * 127.34650 * 5.76798 * 11 9 8 13 13 H 0.97001 * 125.90058 * 0.04590 * 12 11 9 14 14 N 1.28615 * 108.19282 * 180.28757 * 12 11 9 15 15 N 1.28453 * 111.22358 * 359.75723 * 14 12 11 16 16 C 1.34172 * 109.40007 * 359.97438 * 15 14 12 17 17 C 1.48201 * 127.06132 * 179.97438 * 16 15 14 18 18 C 1.39430 * 120.12625 * 224.37521 * 17 16 15 19 19 C 1.38000 * 119.86626 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.12708 * 0.02562 * 19 18 17 21 21 C 1.38342 * 120.26789 * 0.02562 * 20 19 18 22 22 C 1.37995 * 120.12544 * 359.97438 * 21 20 19 23 23 N 1.46502 * 109.47057 * 120.00005 * 2 1 3 24 24 C 1.36944 * 119.99681 * 275.00183 * 23 2 1 25 25 H 1.07999 * 120.00123 * 359.97438 * 24 23 2 26 26 C 1.38814 * 119.99598 * 180.02562 * 24 23 2 27 27 N 1.31612 * 120.00337 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 119.99631 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47150 * 59.99601 * 28 26 24 30 30 H 1.48498 * 109.46998 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47196 * 299.99498 * 28 26 24 32 32 H 1.08997 * 109.46836 * 300.00467 * 1 2 3 33 33 H 1.08997 * 109.46619 * 59.99941 * 1 2 3 34 34 H 1.08999 * 109.46880 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46843 * 55.00065 * 4 2 1 36 36 H 1.09003 * 109.47193 * 295.00613 * 4 2 1 37 37 H 1.08997 * 109.47419 * 180.02562 * 7 5 4 38 38 H 1.09008 * 109.46871 * 299.99662 * 7 5 4 39 39 H 1.08994 * 109.47710 * 59.99607 * 7 5 4 40 40 H 0.96990 * 119.99974 * 335.00020 * 8 5 4 41 41 H 1.07997 * 120.07023 * 0.25369 * 18 17 16 42 42 H 1.07997 * 119.93324 * 179.97438 * 19 18 17 43 43 H 1.08001 * 119.86656 * 179.97438 * 20 19 18 44 44 H 1.07993 * 119.93839 * 179.97438 * 21 20 19 45 45 H 1.08000 * 120.06144 * 179.97438 * 22 21 20 46 46 H 0.96998 * 120.00427 * 95.00058 * 23 2 1 47 47 H 0.97001 * 120.00371 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0852 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2134 -1.0867 10 8 5.9381 0.4315 -0.5716 11 6 5.5454 2.6203 -1.2655 12 7 4.7578 3.6461 -1.7213 13 1 3.8282 3.5740 -1.9887 14 7 5.4662 4.7195 -1.7376 15 7 6.6616 4.4940 -1.3248 16 6 6.7857 3.1967 -1.0059 17 6 7.9967 2.5156 -0.4902 18 6 8.3766 1.2774 -1.0066 19 6 9.5056 0.6482 -0.5229 20 6 10.2594 1.2434 0.4728 21 6 9.8868 2.4713 0.9898 22 6 8.7599 3.1100 0.5140 23 7 2.0184 -0.6906 1.1962 24 6 2.1491 -0.0074 2.3758 25 1 1.8926 1.0406 2.4242 26 6 2.6123 -0.6617 3.5091 27 7 2.9253 -1.9387 3.4500 28 14 2.7913 0.2705 5.1180 29 1 1.4691 0.8073 5.5288 30 1 3.3001 -0.6479 6.1682 31 1 3.7465 1.3929 4.9362 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.6054 -0.2618 -2.1369 36 1 1.7516 -1.7716 -1.2055 37 1 5.1715 -1.3619 -2.5381 38 1 3.8001 -2.4821 -2.3593 39 1 3.6547 -1.0595 -3.4192 40 1 3.3285 1.4127 -1.9028 41 1 7.7912 0.8138 -1.7868 42 1 9.8006 -0.3110 -0.9218 43 1 11.1419 0.7470 0.8486 44 1 10.4789 2.9309 1.7673 45 1 8.4697 4.0683 0.9186 46 1 2.2491 -1.6318 1.1527 47 1 3.2487 -2.3959 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146625161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:00 Heat of formation + Delta-G solvation = 64.480640 kcal Electronic energy + Delta-G solvation = -30315.990081 eV Core-core repulsion = 26306.855100 eV Total energy + Delta-G solvation = -4009.134982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.43598 -40.85984 -39.85789 -38.33793 -36.19429 -35.06905 -34.05137 -33.58930 -32.06752 -31.79854 -30.56037 -30.30854 -27.60370 -25.95543 -25.61119 -24.70331 -23.56419 -23.13250 -22.11229 -21.64339 -21.23928 -20.26093 -19.24508 -18.16934 -17.57046 -17.54600 -17.24878 -16.68250 -16.31096 -15.94657 -15.68916 -15.64274 -15.56130 -15.19737 -14.62707 -14.50321 -14.37801 -14.18222 -13.86071 -13.60682 -13.41953 -13.36278 -13.18389 -12.96273 -12.79946 -12.67629 -12.57440 -12.29847 -12.24130 -12.20104 -12.09486 -11.83356 -11.81731 -11.57870 -11.43742 -11.28770 -10.91785 -10.82736 -10.14363 -9.79050 -9.46236 -8.94861 -7.93052 -5.17581 -0.47684 0.29125 0.54358 1.15512 1.26492 1.40871 1.43426 1.48133 1.90846 1.99334 2.54499 2.84752 3.01688 3.37687 3.41684 3.67277 3.82726 3.84801 4.01239 4.09667 4.11203 4.13953 4.25415 4.39443 4.40565 4.54368 4.62861 4.67988 4.70926 4.79755 4.83384 4.91712 5.02245 5.03816 5.10862 5.14478 5.21183 5.35055 5.37854 5.47958 5.54164 5.55512 5.58084 5.59314 5.61226 5.63725 6.06927 6.30502 6.35795 7.01083 7.04716 7.36980 8.17619 8.36256 9.30240 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.004086 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.127413 B = 6851.398383 C = 8054.320226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.119 4.119 5 C 0.150 3.850 6 H 0.055 0.945 7 C -0.152 4.152 8 N -0.694 5.694 9 C 0.590 3.410 10 O -0.532 6.532 11 C -0.054 4.054 12 N -0.342 5.342 13 H 0.471 0.529 14 N -0.048 5.048 15 N -0.278 5.278 16 C 0.083 3.917 17 C -0.045 4.045 18 C -0.069 4.069 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.102 4.102 23 N -0.730 5.730 24 C -0.226 4.226 25 H 0.067 0.933 26 C -0.072 4.072 27 N -0.965 5.965 28 Si 0.953 3.047 29 H -0.277 1.277 30 H -0.296 1.296 31 H -0.289 1.289 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.408 0.592 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 7.299 -16.851 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.046 3.954 6 H 0.074 0.926 7 C -0.211 4.211 8 N -0.346 5.346 9 C 0.373 3.627 10 O -0.406 6.406 11 C -0.190 4.190 12 N -0.072 5.072 13 H 0.323 0.677 14 N -0.030 5.030 15 N -0.143 5.143 16 C -0.056 4.056 17 C -0.047 4.047 18 C -0.088 4.088 19 C -0.152 4.152 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.121 4.121 23 N -0.371 5.371 24 C -0.358 4.358 25 H 0.085 0.915 26 C -0.265 4.265 27 N -0.616 5.616 28 Si 0.784 3.216 29 H -0.203 1.203 30 H -0.223 1.223 31 H -0.216 1.216 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.245 0.755 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.170 0.830 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.118 8.382 -16.666 19.633 hybrid contribution -0.922 -0.800 1.348 1.819 sum 5.196 7.582 -15.318 17.864 Atomic orbital electron populations 1.22326 0.97870 1.00896 1.00678 1.20542 0.92573 0.95264 0.86140 0.93903 1.22112 0.92521 1.02621 0.98497 1.20945 0.95811 0.79647 0.99034 0.92636 1.22096 1.00762 1.00323 0.97872 1.45710 1.15002 1.12411 1.61478 1.16702 0.83148 0.84135 0.78743 1.90924 1.51842 1.54564 1.43306 1.22468 0.93185 0.91738 1.11583 1.45281 1.15036 1.04713 1.42154 0.67747 1.77964 0.98763 1.09428 1.16821 1.75200 1.09579 1.14314 1.15231 1.20994 0.93593 0.90058 1.00989 1.17729 0.92665 0.95317 0.98969 1.21131 0.95785 0.92673 0.99206 1.21338 0.95015 1.00669 0.98130 1.21627 1.00160 0.95165 0.95571 1.21366 0.96735 0.96018 1.00796 1.21319 0.95152 1.00000 0.95623 1.42580 1.78194 1.10145 1.06159 1.19401 1.34173 0.93654 0.88591 0.91508 1.25336 1.03561 0.96743 1.00850 1.69759 1.52869 1.09887 1.29072 0.85506 0.77777 0.77442 0.80875 1.20304 1.22252 1.21572 0.95433 0.90347 0.93941 0.87162 0.90213 0.93817 0.90976 0.89896 0.75522 0.86554 0.83972 0.83020 0.83201 0.85675 0.79686 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.49 71.98 0.68 -4.01 16 2 C 0.16 5.34 2.84 44.99 0.13 5.47 16 3 H 0.04 1.40 7.56 -2.39 -0.02 1.39 16 4 C -0.12 -2.83 4.29 30.59 0.13 -2.70 16 5 C 0.15 4.03 2.52 44.99 0.11 4.14 16 6 H 0.06 2.19 7.05 -2.39 -0.02 2.17 16 7 C -0.15 -3.28 9.48 71.98 0.68 -2.60 16 8 N -0.69 -16.15 4.44 -446.27 -1.98 -18.13 16 9 C 0.59 17.72 7.57 86.52 0.66 18.38 16 10 O -0.53 -20.54 13.09 -4.24 -0.06 -20.59 16 11 C -0.05 -1.47 7.20 40.83 0.29 -1.18 16 12 N -0.34 -6.80 6.96 -47.39 -0.33 -7.13 16 13 H 0.47 4.76 8.35 -219.92 -1.84 2.93 16 14 N -0.05 -1.21 13.31 37.02 0.49 -0.72 16 15 N -0.28 -8.35 12.38 -48.05 -0.60 -8.95 16 16 C 0.08 2.57 6.77 41.67 0.28 2.85 16 17 C -0.04 -1.40 5.49 -20.05 -0.11 -1.51 16 18 C -0.07 -2.05 7.68 22.50 0.17 -1.87 16 19 C -0.13 -3.40 10.03 22.24 0.22 -3.17 16 20 C -0.11 -2.42 10.04 22.32 0.22 -2.19 16 21 C -0.13 -3.12 10.03 22.24 0.22 -2.89 16 22 C -0.10 -2.90 9.78 22.50 0.22 -2.68 16 23 N -0.73 -34.21 4.49 -322.93 -1.45 -35.66 16 24 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 25 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 26 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 27 N -0.96 -59.48 13.06 21.65 0.28 -59.20 16 28 Si 0.95 47.52 29.55 68.60 2.03 49.55 16 29 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 30 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 31 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.63 8.14 -2.38 -0.02 1.62 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.41 5.96 7.90 -92.72 -0.73 5.23 16 41 H 0.12 3.48 6.92 -2.91 -0.02 3.46 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 46 H 0.37 19.08 7.80 -92.71 -0.72 18.36 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -77.77 396.35 1.34 -76.42 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -2.27 Total: 33.54 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.22 Total: -9.14 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -3.58 Total: -129.78 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.59 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -77.77 1.34 -76.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146625161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.904 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds